RNA–Protein interactions for RNA: ENST00000360264.7

CUX1-203, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CUX1, Length 13,762 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-203ENST00000360264 AAMPQ13685 434 aa11.78□□□□□ -0.52
CUX1-203ENST00000360264 STAC3Q96MF2 364 aa11.78□□□□□ -0.52
CUX1-203ENST00000360264 RBM33Q96EV2 1170 aaKnown RBP11.78□□□□□ -0.52
CUX1-203ENST00000360264 ERC2O15083 957 aa11.77□□□□□ -0.52
CUX1-203ENST00000360264 RILPL2Q969X0 211 aa11.77□□□□□ -0.53
CUX1-203ENST00000360264 CCAR2Q8N163 923 aaKnown RBP11.77□□□□□ -0.53
CUX1-203ENST00000360264 DHX16O60231 1041 aaKnown RBP11.77□□□□□ -0.53
CUX1-203ENST00000360264 IFIT2P09913 472 aaKnown RBP11.77□□□□□ -0.53
CUX1-203ENST00000360264 NFXL1Q6ZNB6 911 aa11.76□□□□□ -0.53
CUX1-203ENST00000360264 API5Q9BZZ5 524 aaKnown RBP11.76□□□□□ -0.53
CUX1-203ENST00000360264 MYBBP1AQ9BQG0 1328 aaKnown RBP11.76□□□□□ -0.53
CUX1-203ENST00000360264 ABCC8Q09428 1581 aa11.76□□□□□ -0.53
CUX1-203ENST00000360264 G3BP1Q13283 466 aaKnown RBP eCLIP11.76□□□□□ -0.53
CUX1-203ENST00000360264 CCDC146Q8IYE0 955 aa11.76□□□□□ -0.53
CUX1-203ENST00000360264 DDX19BQ9UMR2 479 aa11.75□□□□□ -0.53
CUX1-203ENST00000360264 FOXD1Q16676 465 aa11.75□□□□□ -0.53
CUX1-203ENST00000360264 ODF2Q5BJF6 829 aa11.75□□□□□ -0.53
CUX1-203ENST00000360264 NINLQ9Y2I6 1382 aa11.75□□□□□ -0.53
CUX1-203ENST00000360264 HMGB2P26583 209 aaKnown RBP11.75□□□□□ -0.53
CUX1-203ENST00000360264 DCTN1Q14203 1278 aa11.75□□□□□ -0.53
CUX1-203ENST00000360264 ANO2Q9NQ90 1003 aa11.74□□□□□ -0.53
CUX1-203ENST00000360264 WWC2Q6AWC2 1192 aa11.74□□□□□ -0.53
CUX1-203ENST00000360264 SART3Q15020 963 aaKnown RBP11.74□□□□□ -0.53
CUX1-203ENST00000360264 CT47A1Q5JQC4 288 aaPredicted RBP11.74□□□□□ -0.53
CUX1-203ENST00000360264 RAPGEF2Q9Y4G8 1499 aa11.74□□□□□ -0.53
CUX1-203ENST00000360264 PCMTD1Q96MG8 357 aaPredicted RBP11.74□□□□□ -0.53
CUX1-203ENST00000360264 HSP90AA2PQ14568 343 aaPredicted RBP11.74□□□□□ -0.53
CUX1-203ENST00000360264 RSPH6AQ9H0K4 717 aa11.74□□□□□ -0.53
CUX1-203ENST00000360264 GON4LQ3T8J9 2241 aa11.73□□□□□ -0.53
CUX1-203ENST00000360264 APPP05067 770 aa11.73□□□□□ -0.53
CUX1-203ENST00000360264 ANKRD45Q5TZF3 282 aa11.73□□□□□ -0.53
CUX1-203ENST00000360264 PANK3Q9H999 370 aa11.73□□□□□ -0.53
CUX1-203ENST00000360264 RUFY1Q96T51 708 aa11.73□□□□□ -0.53
CUX1-203ENST00000360264 XBP1P17861 261 aa11.73□□□□□ -0.53
CUX1-203ENST00000360264 FAM161AQ3B820 660 aa11.73□□□□□ -0.53
CUX1-203ENST00000360264 ARGLU1Q9NWB6 273 aaPredicted RBP11.72□□□□□ -0.53
CUX1-203ENST00000360264 CCDC73Q6ZRK6 1079 aa11.72□□□□□ -0.53
CUX1-203ENST00000360264 NUCB2P80303 420 aa11.72□□□□□ -0.53
CUX1-203ENST00000360264 NOL8Q76FK4 1167 aaKnown RBP11.72□□□□□ -0.53
CUX1-203ENST00000360264 CLUAP1Q96AJ1 413 aa11.72□□□□□ -0.53
CUX1-203ENST00000360264 NAT10Q9H0A0 1025 aaKnown RBP11.72□□□□□ -0.53
CUX1-203ENST00000360264 INTS3Q68E01 1043 aaKnown RBP11.72□□□□□ -0.53
CUX1-203ENST00000360264 ZSCAN21Q9Y5A6 473 aaPredicted RBP11.72□□□□□ -0.53
CUX1-203ENST00000360264 PSME1Q06323 249 aa11.72□□□□□ -0.53
CUX1-203ENST00000360264 NAP1L1P55209 391 aaKnown RBP11.71□□□□□ -0.53
CUX1-203ENST00000360264 CCP110O43303 1012 aa11.71□□□□□ -0.53
CUX1-203ENST00000360264 RALYLQ86SE5 291 aaKnown RBP11.71□□□□□ -0.53
CUX1-203ENST00000360264 UTP3Q9NQZ2 479 aaKnown RBP eCLIP11.71□□□□□ -0.538e-7■■■■■ 154.8
CUX1-203ENST00000360264 MSH5O43196 834 aa11.71□□□□□ -0.53
CUX1-203ENST00000360264 RAD21O60216 631 aa11.71□□□□□ -0.53
CUX1-203ENST00000360264 SLC3A2P08195 630 aaKnown RBP11.71□□□□□ -0.54
CUX1-203ENST00000360264 AMER1Q5JTC6 1135 aaPredicted RBP11.71□□□□□ -0.54
CUX1-203ENST00000360264 MIA2Q96PC5 1412 aa11.71□□□□□ -0.54
CUX1-203ENST00000360264 TRAK1Q9UPV9 953 aa11.71□□□□□ -0.54
CUX1-203ENST00000360264 KIF7Q2M1P5 1343 aa11.71□□□□□ -0.54
CUX1-203ENST00000360264 CCDC173Q0VFZ6 552 aa11.71□□□□□ -0.54
CUX1-203ENST00000360264 ZRSR2Q15696 482 aaKnown RBP11.7□□□□□ -0.54
CUX1-203ENST00000360264 NUTM2DQ5VT03 806 aaPredicted RBP11.7□□□□□ -0.54
CUX1-203ENST00000360264 DDX49Q9Y6V7 483 aaKnown RBP11.7□□□□□ -0.54
CUX1-203ENST00000360264 DHX8Q14562 1220 aaKnown RBP11.7□□□□□ -0.54
CUX1-203ENST00000360264 ZBED9Q6R2W3 1325 aa11.7□□□□□ -0.54
CUX1-203ENST00000360264 NOM1Q5C9Z4 860 aaKnown RBP11.69□□□□□ -0.54
CUX1-203ENST00000360264 HOMER1Q86YM7 354 aa11.69□□□□□ -0.54
CUX1-203ENST00000360264 MYO15BQ96JP2 1530 aa11.69□□□□□ -0.54
CUX1-203ENST00000360264 PRDM2Q13029 1718 aa11.69□□□□□ -0.54
CUX1-203ENST00000360264 JPH4Q96JJ6 628 aa11.69□□□□□ -0.54
CUX1-203ENST00000360264 ERCC4Q92889 916 aaPredicted RBP11.69□□□□□ -0.54
CUX1-203ENST00000360264 ARID3AQ99856 593 aa11.68□□□□□ -0.54
CUX1-203ENST00000360264 GNL3LQ9NVN8 582 aaKnown RBP11.68□□□□□ -0.54
CUX1-203ENST00000360264 HIP1O00291 1037 aa11.68□□□□□ -0.54
CUX1-203ENST00000360264 OFD1O75665 1012 aa11.68□□□□□ -0.54
CUX1-203ENST00000360264 PDZRN4Q6ZMN7 1036 aaPredicted RBP11.68□□□□□ -0.54
CUX1-203ENST00000360264 BICD2Q8TD16 824 aa11.68□□□□□ -0.54
CUX1-203ENST00000360264 CALRP27797 417 aaKnown RBP11.68□□□□□ -0.54
CUX1-203ENST00000360264 ATF3P18847 181 aa11.68□□□□□ -0.54
CUX1-203ENST00000360264 SYTL4Q96C24 671 aaPredicted RBP11.68□□□□□ -0.54
CUX1-203ENST00000360264 HNRNPMP52272 730 aaKnown RBP eCLIP11.67□□□□□ -0.549e-7■■■□□ 19.2
CUX1-203ENST00000360264 GNAI1P63096 354 aa11.67□□□□□ -0.54
CUX1-203ENST00000360264 CCAR1Q8IX12 1150 aaKnown RBP11.67□□□□□ -0.54
CUX1-203ENST00000360264 TBC1D2BQ9UPU7 963 aa11.66□□□□□ -0.54
CUX1-203ENST00000360264 FBXW7Q969H0 707 aa11.66□□□□□ -0.54
CUX1-203ENST00000360264 HSP90B2PQ58FF3 399 aa11.66□□□□□ -0.54
CUX1-203ENST00000360264 FOXD4L5Q5VV16 416 aaPredicted RBP11.66□□□□□ -0.54
CUX1-203ENST00000360264 FOXD4L4Q8WXT5 416 aaPredicted RBP11.66□□□□□ -0.54
CUX1-203ENST00000360264 OLFM4Q6UX06 510 aa11.66□□□□□ -0.54
CUX1-203ENST00000360264 CNTROBQ8N137 903 aa11.66□□□□□ -0.54
CUX1-203ENST00000360264 ANKRD18AQ8IVF6 992 aa11.65□□□□□ -0.54
CUX1-203ENST00000360264 RAPGEF4Q8WZA2 1011 aa11.65□□□□□ -0.54
CUX1-203ENST00000360264 FOXD4L1Q9NU39 408 aa11.65□□□□□ -0.54
CUX1-203ENST00000360264 CCDC88BA6NC98 1476 aa11.65□□□□□ -0.54
CUX1-203ENST00000360264 SASS6Q6UVJ0 657 aa11.65□□□□□ -0.54
CUX1-203ENST00000360264 MTERF4Q7Z6M4 381 aaKnown RBP11.65□□□□□ -0.54
CUX1-203ENST00000360264 ST20-MTHFSA0A0A6YYL1 179 aa11.65□□□□□ -0.54
CUX1-203ENST00000360264 PIP4K2AP48426 406 aaPredicted RBP11.65□□□□□ -0.54
CUX1-203ENST00000360264 TOP2AP11388 1531 aaKnown RBP11.65□□□□□ -0.55
CUX1-203ENST00000360264 MNS1Q8NEH6 495 aa11.64□□□□□ -0.55
CUX1-203ENST00000360264 EIF2S2P20042 333 aaKnown RBP11.64□□□□□ -0.55
CUX1-203ENST00000360264 DZIP1LQ8IYY4 767 aaKnown RBP11.64□□□□□ -0.55
CUX1-203ENST00000360264 FKBP5Q13451 457 aaPredicted RBP11.64□□□□□ -0.55
CUX1-203ENST00000360264 ZNF592Q92610 1267 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms