RNA–Protein interactions for RNA: ENST00000359947.8

PTPRF-201, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best) BASIC

Gene PTPRF, Length 7,727 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-201ENST00000359947 FANCD2Q9BXW9 1451 aa19.23■□□□□ 0.67
PTPRF-201ENST00000359947 DCAF8L1A6NGE4 600 aa19.23■□□□□ 0.67
PTPRF-201ENST00000359947 RAPGEF4Q8WZA2 1011 aa19.23■□□□□ 0.67
PTPRF-201ENST00000359947 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP19.23■□□□□ 0.67
PTPRF-201ENST00000359947 ST18O60284 1047 aa19.22■□□□□ 0.67
PTPRF-201ENST00000359947 NUTM2BA6NNL0 878 aaPredicted RBP19.22■□□□□ 0.67
PTPRF-201ENST00000359947 NUTM2EB1AL46 878 aaPredicted RBP19.22■□□□□ 0.67
PTPRF-201ENST00000359947 NUTM2AQ8IVF1 878 aaPredicted RBP19.22■□□□□ 0.67
PTPRF-201ENST00000359947 FBXO3Q9UK99 471 aa19.22■□□□□ 0.67
PTPRF-201ENST00000359947 DIAPH3Q9NSV4 1193 aa19.21■□□□□ 0.67
PTPRF-201ENST00000359947 DIAPH1O60610 1272 aaKnown RBP19.21■□□□□ 0.67
PTPRF-201ENST00000359947 KIF15Q9NS87 1388 aa19.21■□□□□ 0.67
PTPRF-201ENST00000359947 RBM19Q9Y4C8 960 aaKnown RBP19.21■□□□□ 0.66
PTPRF-201ENST00000359947 STRN4Q9NRL3 753 aa19.2■□□□□ 0.66
PTPRF-201ENST00000359947 RIPK4P57078 832 aa19.2■□□□□ 0.66
PTPRF-201ENST00000359947 CSPP1Q1MSJ5 1256 aa19.2■□□□□ 0.66
PTPRF-201ENST00000359947 FKBP5Q13451 457 aaPredicted RBP19.2■□□□□ 0.66
PTPRF-201ENST00000359947 MTMR7Q9Y216 660 aa19.19■□□□□ 0.66
PTPRF-201ENST00000359947 IFIT2P09913 472 aaKnown RBP19.19■□□□□ 0.66
PTPRF-201ENST00000359947 KIF3AQ9Y496 699 aa19.18■□□□□ 0.66
PTPRF-201ENST00000359947 MYBBP1AQ9BQG0 1328 aaKnown RBP19.18■□□□□ 0.66
PTPRF-201ENST00000359947 ESCO1Q5FWF5 840 aa19.18■□□□□ 0.66
PTPRF-201ENST00000359947 DDX58O95786 925 aaKnown RBP19.17■□□□□ 0.66
PTPRF-201ENST00000359947 CCDC27Q2M243 656 aa19.17■□□□□ 0.66
PTPRF-201ENST00000359947 PIP4K2BP78356 416 aa19.17■□□□□ 0.66
PTPRF-201ENST00000359947 TMEM132EQ6IEE7 984 aa19.17■□□□□ 0.66
PTPRF-201ENST00000359947 APAF1O14727 1248 aa19.17■□□□□ 0.66
PTPRF-201ENST00000359947 ABCF1Q8NE71 845 aaKnown RBP eCLIP19.17■□□□□ 0.66
PTPRF-201ENST00000359947 PTMSP20962 102 aa19.16■□□□□ 0.66
PTPRF-201ENST00000359947 TSPYL4Q9UJ04 414 aa19.16■□□□□ 0.66
PTPRF-201ENST00000359947 CABP2Q9NPB3 220 aa19.16■□□□□ 0.66
PTPRF-201ENST00000359947 COG6Q9Y2V7 657 aa19.16■□□□□ 0.66
PTPRF-201ENST00000359947 TOP2AP11388 1531 aaKnown RBP19.16■□□□□ 0.66
PTPRF-201ENST00000359947 FOSBP53539 338 aa19.16■□□□□ 0.66
PTPRF-201ENST00000359947 RIC3Q7Z5B4 369 aa19.16■□□□□ 0.66
PTPRF-201ENST00000359947 ZNF428Q96B54 188 aa19.16■□□□□ 0.66
PTPRF-201ENST00000359947 ZKSCAN2Q63HK3 967 aa19.15■□□□□ 0.66
PTPRF-201ENST00000359947 NFXL1Q6ZNB6 911 aa19.15■□□□□ 0.66
PTPRF-201ENST00000359947 NEUROD6Q96NK8 337 aa19.15■□□□□ 0.66
PTPRF-201ENST00000359947 DEKP35659 375 aaKnown RBP19.14■□□□□ 0.65
PTPRF-201ENST00000359947 NLRP6P59044 892 aa19.14■□□□□ 0.65
PTPRF-201ENST00000359947 G3BP1Q13283 466 aaKnown RBP eCLIP19.14■□□□□ 0.654e-7■□□□□ 8.1
PTPRF-201ENST00000359947 TPM3P06753 285 aa19.13■□□□□ 0.65
PTPRF-201ENST00000359947 LRRFIP1Q32MZ4 808 aaKnown RBP19.13■□□□□ 0.65
PTPRF-201ENST00000359947 ANO2Q9NQ90 1003 aa19.13■□□□□ 0.65
PTPRF-201ENST00000359947 ABTB2Q8N961 1025 aa19.12■□□□□ 0.65
PTPRF-201ENST00000359947 RBM42Q9BTD8 480 aaKnown RBP19.12■□□□□ 0.65
PTPRF-201ENST00000359947 TRIM29Q14134 588 aa19.12■□□□□ 0.65
PTPRF-201ENST00000359947 GGNBP2Q9H3C7 697 aa19.12■□□□□ 0.65
PTPRF-201ENST00000359947 KDM4AO75164 1064 aa19.12■□□□□ 0.65
PTPRF-201ENST00000359947 ZNF644Q9H582 1327 aaPredicted RBP19.11■□□□□ 0.65
PTPRF-201ENST00000359947 SLC4A3P48751 1232 aa19.11■□□□□ 0.65
PTPRF-201ENST00000359947 PROSER2Q86WR7 435 aaPredicted RBP19.11■□□□□ 0.65
PTPRF-201ENST00000359947 SF3B2Q13435 895 aaKnown RBP19.1■□□□□ 0.65
PTPRF-201ENST00000359947 CCDC43Q96MW1 224 aaKnown RBP19.1■□□□□ 0.65
PTPRF-201ENST00000359947 USP47Q96K76 1375 aa19.1■□□□□ 0.65
PTPRF-201ENST00000359947 PCMTD1Q96MG8 357 aaPredicted RBP19.1■□□□□ 0.65
PTPRF-201ENST00000359947 PHLDB1Q86UU1 1377 aa19.1■□□□□ 0.65
PTPRF-201ENST00000359947 CPLX1O14810 134 aa19.1■□□□□ 0.65
PTPRF-201ENST00000359947 TRDNQ13061 729 aa19.1■□□□□ 0.65
PTPRF-201ENST00000359947 E9PSI1 815 aa19.09■□□□□ 0.65
PTPRF-201ENST00000359947 TSR1Q2NL82 804 aaKnown RBP19.09■□□□□ 0.65
PTPRF-201ENST00000359947 ERICH2A1L162 156 aa19.08■□□□□ 0.64
PTPRF-201ENST00000359947 TXNDC2Q86VQ3 553 aa19.08■□□□□ 0.64
PTPRF-201ENST00000359947 CRBNQ96SW2 442 aa19.07■□□□□ 0.64
PTPRF-201ENST00000359947 IKQ13123 557 aaPredicted RBP19.07■□□□□ 0.64
PTPRF-201ENST00000359947 PDE3BQ13370 1112 aa19.07■□□□□ 0.64
PTPRF-201ENST00000359947 CPLX2Q6PUV4 134 aaKnown RBP19.07■□□□□ 0.64
PTPRF-201ENST00000359947 GOLGA6L3A6NEY3 463 aa19.07■□□□□ 0.64
PTPRF-201ENST00000359947 WASHC4Q2M389 1173 aa19.06■□□□□ 0.64
PTPRF-201ENST00000359947 TPM2P07951 284 aa19.06■□□□□ 0.64
PTPRF-201ENST00000359947 CCAR2Q8N163 923 aaKnown RBP19.06■□□□□ 0.64
PTPRF-201ENST00000359947 RUFY2Q8WXA3 655 aa19.06■□□□□ 0.64
PTPRF-201ENST00000359947 RAD54L2Q9Y4B4 1467 aa19.06■□□□□ 0.64
PTPRF-201ENST00000359947 ATAD2BQ9ULI0 1458 aa19.05■□□□□ 0.64
PTPRF-201ENST00000359947 DHX57Q6P158 1386 aaKnown RBP19.05■□□□□ 0.64
PTPRF-201ENST00000359947 GAPVD1Q14C86 1478 aa19.05■□□□□ 0.64
PTPRF-201ENST00000359947 ZKSCAN1P17029 563 aaPredicted RBP19.05■□□□□ 0.64
PTPRF-201ENST00000359947 PHF14O94880 888 aa19.04■□□□□ 0.64
PTPRF-201ENST00000359947 RUSC2Q8N2Y8 1516 aa19.04■□□□□ 0.64
PTPRF-201ENST00000359947 GOLGA6L19H0YKK7 550 aa19.03■□□□□ 0.64
PTPRF-201ENST00000359947 GOLGA6L1Q8N7Z2 621 aa19.03■□□□□ 0.64
PTPRF-201ENST00000359947 DDX54Q8TDD1 881 aaKnown RBP19.03■□□□□ 0.64
PTPRF-201ENST00000359947 AQRO60306 1485 aaKnown RBP eCLIP19.03■□□□□ 0.641e-6■■■■■ 36.8
PTPRF-201ENST00000359947 AFAP1Q8N556 730 aa19.03■□□□□ 0.64
PTPRF-201ENST00000359947 EXOC6Q8TAG9 804 aa19.03■□□□□ 0.64
PTPRF-201ENST00000359947 BECN2A8MW95 431 aa19.02■□□□□ 0.64
PTPRF-201ENST00000359947 GPRASP1Q5JY77 1395 aa19.02■□□□□ 0.63
PTPRF-201ENST00000359947 CCAR1Q8IX12 1150 aaKnown RBP19.01■□□□□ 0.63
PTPRF-201ENST00000359947 KIF6Q6ZMV9 814 aa18.99■□□□□ 0.63
PTPRF-201ENST00000359947 DZIP1LQ8IYY4 767 aaKnown RBP18.99■□□□□ 0.63
PTPRF-201ENST00000359947 ARHGAP5Q13017 1502 aa18.98■□□□□ 0.63
PTPRF-201ENST00000359947 FAM161AQ3B820 660 aa18.98■□□□□ 0.63
PTPRF-201ENST00000359947 DDX19BQ9UMR2 479 aa18.98■□□□□ 0.63
PTPRF-201ENST00000359947 CENPQQ7L2Z9 268 aaPredicted RBP18.98■□□□□ 0.63
PTPRF-201ENST00000359947 TOM1L2Q6ZVM7 507 aa18.97■□□□□ 0.63
PTPRF-201ENST00000359947 API5Q9BZZ5 524 aaKnown RBP18.97■□□□□ 0.63
PTPRF-201ENST00000359947 TPM1P09493 284 aa18.97■□□□□ 0.63
PTPRF-201ENST00000359947 STK11IPQ8N1F8 1099 aa18.97■□□□□ 0.63
PTPRF-201ENST00000359947 DDX49Q9Y6V7 483 aaKnown RBP18.97■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms