RNA–Protein interactions for RNA: ENST00000358528.8

CSDE1-203, Transcript of cold shock domain containing E1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSDE1, Length 4,076 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-203ENST00000358528 L1TD1Q5T7N2 865 aaKnown RBP8.35□□□□□ -1.07
CSDE1-203ENST00000358528 GGT6Q6P531 493 aa8.35□□□□□ -1.07
CSDE1-203ENST00000358528 MRC2Q9UBG0 1479 aa8.35□□□□□ -1.07
CSDE1-203ENST00000358528 KIF14Q15058 1648 aa8.35□□□□□ -1.07
CSDE1-203ENST00000358528 NCLP19338 710 aaKnown RBP8.35□□□□□ -1.07
CSDE1-203ENST00000358528 HSCBQ8IWL3 235 aa8.35□□□□□ -1.07
CSDE1-203ENST00000358528 TRIM44Q96DX7 344 aaPredicted RBP8.35□□□□□ -1.07
CSDE1-203ENST00000358528 PDZRN3Q9UPQ7 1066 aa8.35□□□□□ -1.07
CSDE1-203ENST00000358528 TNNQ9UQP3 1299 aa8.35□□□□□ -1.07
CSDE1-203ENST00000358528 GRIN2AQ12879 1464 aa8.35□□□□□ -1.07
CSDE1-203ENST00000358528 GOLGA6L3A6NEY3 463 aa8.35□□□□□ -1.07
CSDE1-203ENST00000358528 HSP90AB1P08238 724 aaKnown RBP8.35□□□□□ -1.07
CSDE1-203ENST00000358528 TCP11L2Q8N4U5 519 aa8.35□□□□□ -1.07
CSDE1-203ENST00000358528 DMRT2Q9Y5R5 561 aa8.35□□□□□ -1.07
CSDE1-203ENST00000358528 DISP1Q96F81 1524 aa8.35□□□□□ -1.07
CSDE1-203ENST00000358528 MAGI1Q96QZ7 1491 aaPredicted RBP8.35□□□□□ -1.07
CSDE1-203ENST00000358528 PRAG1Q86YV5 1406 aa8.35□□□□□ -1.07
CSDE1-203ENST00000358528 TMEM132EQ6IEE7 984 aa8.34□□□□□ -1.07
CSDE1-203ENST00000358528 ARHGAP5Q13017 1502 aa8.34□□□□□ -1.07
CSDE1-203ENST00000358528 SLC12A5Q9H2X9 1139 aa8.34□□□□□ -1.07
CSDE1-203ENST00000358528 KIAA0556O60303 1618 aa8.33□□□□□ -1.08
CSDE1-203ENST00000358528 UHRF1BP1Q6BDS2 1440 aa8.33□□□□□ -1.08
CSDE1-203ENST00000358528 AMER1Q5JTC6 1135 aaPredicted RBP8.33□□□□□ -1.08
CSDE1-203ENST00000358528 PLEKHH2Q8IVE3 1493 aa8.33□□□□□ -1.08
CSDE1-203ENST00000358528 SRPK2P78362 688 aaKnown RBP8.33□□□□□ -1.08
CSDE1-203ENST00000358528 TSR2Q969E8 191 aaKnown RBP8.33□□□□□ -1.08
CSDE1-203ENST00000358528 ADAMTS12P58397 1594 aa8.33□□□□□ -1.08
CSDE1-203ENST00000358528 KDM2BQ8NHM5 1336 aa8.33□□□□□ -1.08
CSDE1-203ENST00000358528 EIF3AQ14152 1382 aaKnown RBP8.33□□□□□ -1.08
CSDE1-203ENST00000358528 MTHFSP49914 203 aa8.33□□□□□ -1.08
CSDE1-203ENST00000358528 TPRNQ4KMQ1 711 aa8.33□□□□□ -1.08
CSDE1-203ENST00000358528 PNNQ9H307 717 aaKnown RBP8.33□□□□□ -1.08
CSDE1-203ENST00000358528 SLC24A1O60721 1099 aa8.32□□□□□ -1.08
CSDE1-203ENST00000358528 WWC1Q8IX03 1113 aa8.32□□□□□ -1.08
CSDE1-203ENST00000358528 IFT140Q96RY7 1462 aa8.32□□□□□ -1.08
CSDE1-203ENST00000358528 APBB1O00213 710 aa8.32□□□□□ -1.08
CSDE1-203ENST00000358528 ELL2O00472 640 aaPredicted RBP8.32□□□□□ -1.08
CSDE1-203ENST00000358528 KANK1Q14678 1352 aa8.32□□□□□ -1.08
CSDE1-203ENST00000358528 MBD5Q9P267 1494 aa8.32□□□□□ -1.08
CSDE1-203ENST00000358528 ANP32BQ92688 251 aaKnown RBP8.32□□□□□ -1.08
CSDE1-203ENST00000358528 MYH16Q9H6N6 1097 aa8.32□□□□□ -1.08
CSDE1-203ENST00000358528 CCDC141Q6ZP82 1450 aa8.31□□□□□ -1.08
CSDE1-203ENST00000358528 RUNDC1Q96C34 613 aa8.31□□□□□ -1.08
CSDE1-203ENST00000358528 ATP10BO94823 1461 aa8.31□□□□□ -1.08
CSDE1-203ENST00000358528 PDE3AQ14432 1141 aa8.31□□□□□ -1.08
CSDE1-203ENST00000358528 SYNJ2O15056 1496 aa8.31□□□□□ -1.08
CSDE1-203ENST00000358528 ZKSCAN2Q63HK3 967 aa8.3□□□□□ -1.08
CSDE1-203ENST00000358528 C22orf23Q9BZE7 217 aa8.3□□□□□ -1.08
CSDE1-203ENST00000358528 LNPKQ9C0E8 428 aa8.3□□□□□ -1.08
CSDE1-203ENST00000358528 FAM135AQ9P2D6 1515 aa8.3□□□□□ -1.08
CSDE1-203ENST00000358528 PBRM1Q86U86 1689 aa8.3□□□□□ -1.08
CSDE1-203ENST00000358528 DZIP1LQ8IYY4 767 aaKnown RBP8.3□□□□□ -1.08
CSDE1-203ENST00000358528 STAG3Q9UJ98 1225 aa8.3□□□□□ -1.08
CSDE1-203ENST00000358528 PCDHB15Q9Y5E8 787 aa8.3□□□□□ -1.08
CSDE1-203ENST00000358528 NKTRP30414 1462 aaKnown RBP8.29□□□□□ -1.08
CSDE1-203ENST00000358528 RSPH6AQ9H0K4 717 aa8.29□□□□□ -1.08
CSDE1-203ENST00000358528 ITSN2Q9NZM3 1697 aa8.29□□□□□ -1.08
CSDE1-203ENST00000358528 A2MP01023 1474 aa8.29□□□□□ -1.08
CSDE1-203ENST00000358528 ZBTB7CA1YPR0 619 aa8.29□□□□□ -1.08
CSDE1-203ENST00000358528 TBC1D2Q9BYX2 928 aa8.29□□□□□ -1.08
CSDE1-203ENST00000358528 RLBP1P12271 317 aa8.29□□□□□ -1.08
CSDE1-203ENST00000358528 TARBP1Q13395 1621 aaKnown RBP8.29□□□□□ -1.08
CSDE1-203ENST00000358528 ARHGEF12Q9NZN5 1544 aa8.29□□□□□ -1.08
CSDE1-203ENST00000358528 COL17A1Q9UMD9 1497 aaPredicted RBP8.29□□□□□ -1.08
CSDE1-203ENST00000358528 RARSP54136 660 aaKnown RBP8.29□□□□□ -1.08
CSDE1-203ENST00000358528 EXOSC9Q06265 439 aaKnown RBP8.28□□□□□ -1.08
CSDE1-203ENST00000358528 GLIPR1L2Q4G1C9 344 aa8.28□□□□□ -1.08
CSDE1-203ENST00000358528 ADGRL2O95490 1459 aa8.28□□□□□ -1.08
CSDE1-203ENST00000358528 GGNBP2Q9H3C7 697 aa8.28□□□□□ -1.08
CSDE1-203ENST00000358528 ANKRD45Q5TZF3 282 aa8.28□□□□□ -1.08
CSDE1-203ENST00000358528 FAM43AQ8N2R8 423 aa8.28□□□□□ -1.08
CSDE1-203ENST00000358528 CABP2Q9NPB3 220 aa8.28□□□□□ -1.08
CSDE1-203ENST00000358528 BLMP54132 1417 aaPredicted RBP8.28□□□□□ -1.08
CSDE1-203ENST00000358528 TRAK2O60296 914 aa8.27□□□□□ -1.09
CSDE1-203ENST00000358528 ZMYM4Q5VZL5 1548 aa8.27□□□□□ -1.09
CSDE1-203ENST00000358528 ADGRF5Q8IZF2 1346 aa8.27□□□□□ -1.09
CSDE1-203ENST00000358528 ARID3AQ99856 593 aa8.27□□□□□ -1.09
CSDE1-203ENST00000358528 CHMP5Q9NZZ3 219 aa8.27□□□□□ -1.09
CSDE1-203ENST00000358528 GOLGA6L22H0YM25 854 aa8.27□□□□□ -1.09
CSDE1-203ENST00000358528 CARD14Q9BXL6 1004 aa8.27□□□□□ -1.09
CSDE1-203ENST00000358528 PANK2Q9BZ23 570 aa8.27□□□□□ -1.09
CSDE1-203ENST00000358528 C1orf115Q9H7X2 142 aa8.26□□□□□ -1.09
CSDE1-203ENST00000358528 SUGP2Q8IX01 1082 aaKnown RBP eCLIP8.26□□□□□ -1.09
CSDE1-203ENST00000358528 MCM4P33991 863 aa8.26□□□□□ -1.09
CSDE1-203ENST00000358528 SYCP2Q9BX26 1530 aa8.26□□□□□ -1.09
CSDE1-203ENST00000358528 RIPK4P57078 832 aa8.25□□□□□ -1.09
CSDE1-203ENST00000358528 FOXD4L5Q5VV16 416 aaPredicted RBP8.25□□□□□ -1.09
CSDE1-203ENST00000358528 FOXD4L4Q8WXT5 416 aaPredicted RBP8.25□□□□□ -1.09
CSDE1-203ENST00000358528 ADGBQ8N7X0 1667 aa8.25□□□□□ -1.09
CSDE1-203ENST00000358528 MAGI2Q86UL8 1455 aa8.25□□□□□ -1.09
CSDE1-203ENST00000358528 SOX12O15370 315 aa8.25□□□□□ -1.09
CSDE1-203ENST00000358528 NSD3Q9BZ95 1437 aa8.25□□□□□ -1.09
CSDE1-203ENST00000358528 MINK1Q8N4C8 1332 aaPredicted RBP8.25□□□□□ -1.09
CSDE1-203ENST00000358528 IPO8O15397 1037 aaKnown RBP8.24□□□□□ -1.09
CSDE1-203ENST00000358528 NPM1P06748 294 aaKnown RBP eCLIP8.24□□□□□ -1.09
CSDE1-203ENST00000358528 MVPQ14764 893 aaKnown RBP8.24□□□□□ -1.09
CSDE1-203ENST00000358528 NOB1Q9ULX3 412 aaKnown RBP8.24□□□□□ -1.09
CSDE1-203ENST00000358528 GBP4Q96PP9 640 aa8.24□□□□□ -1.09
CSDE1-203ENST00000358528 DDX19BQ9UMR2 479 aa8.24□□□□□ -1.09
CSDE1-203ENST00000358528 POLR1AO95602 1720 aaPredicted RBP8.24□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms