RNA–Protein interactions for RNA: ENST00000354433.7

CDRT1-202, CMT1A duplicated region transcript 1, humanhuman

TSL 2 BASIC

Gene CDRT1, Length 1,557 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDRT1-202ENST00000354433 DISP3Q9P2K9 1392 aa17.34■□□□□ 0.37
CDRT1-202ENST00000354433 RIMS2Q9UQ26 1411 aa17.33■□□□□ 0.36
CDRT1-202ENST00000354433 HDGFP51858 240 aaKnown RBP17.32■□□□□ 0.36
CDRT1-202ENST00000354433 NAIPQ13075 1403 aa17.31■□□□□ 0.36
CDRT1-202ENST00000354433 TMEM131LA2VDJ0 1609 aa17.31■□□□□ 0.36
CDRT1-202ENST00000354433 ZFYVE9O95405 1425 aa17.3■□□□□ 0.36
CDRT1-202ENST00000354433 MYO5BQ9ULV0 1848 aa17.28■□□□□ 0.36
CDRT1-202ENST00000354433 NUTM2DQ5VT03 806 aaPredicted RBP17.28■□□□□ 0.36
CDRT1-202ENST00000354433 PLEKHG1Q9ULL1 1385 aa17.28■□□□□ 0.36
CDRT1-202ENST00000354433 HSPA1LP34931 641 aa17.28■□□□□ 0.36
CDRT1-202ENST00000354433 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.28■□□□□ 0.36
CDRT1-202ENST00000354433 TRIM52Q96A61 297 aa17.28■□□□□ 0.36
CDRT1-202ENST00000354433 HFM1A2PYH4 1435 aa17.27■□□□□ 0.35
CDRT1-202ENST00000354433 KCNA6P17658 529 aa17.27■□□□□ 0.35
CDRT1-202ENST00000354433 TMEM94Q12767 1356 aa17.26■□□□□ 0.35
CDRT1-202ENST00000354433 ALKQ9UM73 1620 aa17.25■□□□□ 0.35
CDRT1-202ENST00000354433 SPHKAPQ2M3C7 1700 aa17.25■□□□□ 0.35
CDRT1-202ENST00000354433 PROSER2Q86WR7 435 aaPredicted RBP17.24■□□□□ 0.35
CDRT1-202ENST00000354433 NKTRP30414 1462 aaKnown RBP17.24■□□□□ 0.35
CDRT1-202ENST00000354433 ZNF326Q5BKZ1 582 aaKnown RBP17.23■□□□□ 0.35
CDRT1-202ENST00000354433 RBM33Q96EV2 1170 aaKnown RBP17.23■□□□□ 0.35
CDRT1-202ENST00000354433 NWD1Q149M9 1564 aa17.22■□□□□ 0.35
CDRT1-202ENST00000354433 SLC4A1APQ9BWU0 796 aaKnown RBP17.2■□□□□ 0.34
CDRT1-202ENST00000354433 TRPM2O94759 1503 aa17.2■□□□□ 0.34
CDRT1-202ENST00000354433 XIRP1Q702N8 1843 aaKnown RBP17.19■□□□□ 0.34
CDRT1-202ENST00000354433 DIP2AQ14689 1571 aa17.18■□□□□ 0.34
CDRT1-202ENST00000354433 MSH6P52701 1360 aa17.18■□□□□ 0.34
CDRT1-202ENST00000354433 CLTCL1P53675 1640 aa17.18■□□□□ 0.34
CDRT1-202ENST00000354433 ADAMTS13Q76LX8 1427 aa17.18■□□□□ 0.34
CDRT1-202ENST00000354433 TBX22Q9Y458 520 aa17.18■□□□□ 0.34
CDRT1-202ENST00000354433 C14orf37Q86TY3 774 aa17.17■□□□□ 0.34
CDRT1-202ENST00000354433 PIK3R4Q99570 1358 aa17.14■□□□□ 0.33
CDRT1-202ENST00000354433 CHD2O14647 1828 aaKnown RBP17.13■□□□□ 0.33
CDRT1-202ENST00000354433 MED1Q15648 1581 aaPredicted RBP17.13■□□□□ 0.33
CDRT1-202ENST00000354433 ILDR2Q71H61 639 aa17.13■□□□□ 0.33
CDRT1-202ENST00000354433 NEXMIFQ5QGS0 1516 aa17.11■□□□□ 0.33
CDRT1-202ENST00000354433 FOXD1Q16676 465 aa17.11■□□□□ 0.33
CDRT1-202ENST00000354433 PHF23Q9BUL5 403 aaPredicted RBP17.11■□□□□ 0.33
CDRT1-202ENST00000354433 AMOTL2Q9Y2J4 779 aa17.11■□□□□ 0.33
CDRT1-202ENST00000354433 SETBP1Q9Y6X0 1596 aa17.1■□□□□ 0.33
CDRT1-202ENST00000354433 KIF1BO60333 1816 aa17.1■□□□□ 0.33
CDRT1-202ENST00000354433 FAM135BQ49AJ0 1406 aa17.1■□□□□ 0.33
CDRT1-202ENST00000354433 ROBO1Q9Y6N7 1651 aa17.09■□□□□ 0.33
CDRT1-202ENST00000354433 NRXN3Q9Y4C0 1643 aa17.09■□□□□ 0.33
CDRT1-202ENST00000354433 PTPRUQ92729 1446 aa17.08■□□□□ 0.32
CDRT1-202ENST00000354433 CCDC144AA2RUR9 1427 aa17.07■□□□□ 0.32
CDRT1-202ENST00000354433 SLAIN2Q9P270 581 aa17.06■□□□□ 0.32
CDRT1-202ENST00000354433 NCOA3Q9Y6Q9 1424 aa17.06■□□□□ 0.32
CDRT1-202ENST00000354433 ATF3P18847 181 aa17.06■□□□□ 0.32
CDRT1-202ENST00000354433 VGFO15240 615 aaPredicted RBP17.05■□□□□ 0.32
CDRT1-202ENST00000354433 CADPS2Q86UW7 1296 aa17.05■□□□□ 0.32
CDRT1-202ENST00000354433 MPHOSPH9Q99550 1183 aa17.05■□□□□ 0.32
CDRT1-202ENST00000354433 METP08581 1390 aa17.05■□□□□ 0.32
CDRT1-202ENST00000354433 C19orf44Q9H6X5 657 aa17.04■□□□□ 0.32
CDRT1-202ENST00000354433 SETD5Q9C0A6 1442 aa17.04■□□□□ 0.32
CDRT1-202ENST00000354433 XRN1Q8IZH2 1706 aaKnown RBP17.03■□□□□ 0.32
CDRT1-202ENST00000354433 RPGRIP1LQ68CZ1 1315 aa17.02■□□□□ 0.32
CDRT1-202ENST00000354433 HRCP23327 699 aa17.02■□□□□ 0.31
CDRT1-202ENST00000354433 RGL3Q3MIN7 710 aa17.01■□□□□ 0.31
CDRT1-202ENST00000354433 SIPA1L2Q9P2F8 1722 aaPredicted RBP17■□□□□ 0.31
CDRT1-202ENST00000354433 SOCS7O14512 581 aa17■□□□□ 0.31
CDRT1-202ENST00000354433 ACIN1Q9UKV3 1341 aaKnown RBP17■□□□□ 0.31
CDRT1-202ENST00000354433 RAB3GAP2Q9H2M9 1393 aa16.99■□□□□ 0.31
CDRT1-202ENST00000354433 PHLPP1O60346 1717 aa16.98■□□□□ 0.31
CDRT1-202ENST00000354433 DCCP43146 1447 aa16.98■□□□□ 0.31
CDRT1-202ENST00000354433 PPLO60437 1756 aa16.97■□□□□ 0.31
CDRT1-202ENST00000354433 ADGRL3Q9HAR2 1447 aa16.96■□□□□ 0.3
CDRT1-202ENST00000354433 PTCH1Q13635 1447 aa16.95■□□□□ 0.3
CDRT1-202ENST00000354433 JCADQ9P266 1359 aa16.94■□□□□ 0.3
CDRT1-202ENST00000354433 SPATA31E1Q6ZUB1 1445 aa16.94■□□□□ 0.3
CDRT1-202ENST00000354433 ANKRD30BQ9BXX2 1392 aa16.93■□□□□ 0.3
CDRT1-202ENST00000354433 SETD1AO15047 1707 aaKnown RBP16.93■□□□□ 0.3
CDRT1-202ENST00000354433 BRINP3Q76B58 766 aa16.93■□□□□ 0.3
CDRT1-202ENST00000354433 ADGRF5Q8IZF2 1346 aa16.93■□□□□ 0.3
CDRT1-202ENST00000354433 NALCNQ8IZF0 1738 aa16.92■□□□□ 0.3
CDRT1-202ENST00000354433 COL16A1Q07092 1604 aaPredicted RBP16.92■□□□□ 0.3
CDRT1-202ENST00000354433 MST1RQ04912 1400 aa16.92■□□□□ 0.3
CDRT1-202ENST00000354433 ROBO2Q9HCK4 1378 aa16.92■□□□□ 0.3
CDRT1-202ENST00000354433 AHDC1Q5TGY3 1603 aaPredicted RBP16.91■□□□□ 0.3
CDRT1-202ENST00000354433 ASXL1Q8IXJ9 1541 aa16.91■□□□□ 0.3
CDRT1-202ENST00000354433 ZEB1P37275 1124 aaPredicted RBP16.88■□□□□ 0.29
CDRT1-202ENST00000354433 STK26Q9P289 416 aa16.88■□□□□ 0.29
CDRT1-202ENST00000354433 PIK3C2GO75747 1445 aa16.88■□□□□ 0.29
CDRT1-202ENST00000354433 IFT172Q9UG01 1749 aa16.87■□□□□ 0.29
CDRT1-202ENST00000354433 PRAG1Q86YV5 1406 aa16.87■□□□□ 0.29
CDRT1-202ENST00000354433 MEX3CQ5U5Q3 659 aaKnown RBP16.86■□□□□ 0.29
CDRT1-202ENST00000354433 SPATA31A6Q5VVP1 1343 aa16.85■□□□□ 0.29
CDRT1-202ENST00000354433 TMEM132EQ6IEE7 984 aa16.85■□□□□ 0.29
CDRT1-202ENST00000354433 RGS17Q9UGC6 210 aaPredicted RBP16.85■□□□□ 0.29
CDRT1-202ENST00000354433 C1orf167Q5SNV9 1468 aa16.84■□□□□ 0.29
CDRT1-202ENST00000354433 DDX17Q92841 729 aaKnown RBP16.83■□□□□ 0.28
CDRT1-202ENST00000354433 LRPPRCP42704 1394 aaKnown RBP16.83■□□□□ 0.28
CDRT1-202ENST00000354433 MYOM2P54296 1465 aa16.83■□□□□ 0.28
CDRT1-202ENST00000354433 LRP6O75581 1613 aa16.82■□□□□ 0.28
CDRT1-202ENST00000354433 NHSL1Q5SYE7 1610 aa16.82■□□□□ 0.28
CDRT1-202ENST00000354433 SHPRHQ149N8 1683 aa16.82■□□□□ 0.28
CDRT1-202ENST00000354433 NUTM2BA6NNL0 878 aaPredicted RBP16.81■□□□□ 0.28
CDRT1-202ENST00000354433 NUTM2EB1AL46 878 aaPredicted RBP16.81■□□□□ 0.28
CDRT1-202ENST00000354433 NUTM2AQ8IVF1 878 aaPredicted RBP16.81■□□□□ 0.28
CDRT1-202ENST00000354433 TECPR2O15040 1411 aa16.81■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms