RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 RIMS2Q9UQ26 1411 aa32.3■■■□□ 2.76
SHMT1-203ENST00000354098 EID1Q9Y6B2 187 aa32.27■■■□□ 2.76
SHMT1-203ENST00000354098 NEUROD1Q13562 356 aa32.26■■■□□ 2.75
SHMT1-203ENST00000354098 SCAF11Q99590 1463 aaKnown RBP32.25■■■□□ 2.75
SHMT1-203ENST00000354098 NEURL4Q96JN8 1562 aa32.24■■■□□ 2.75
SHMT1-203ENST00000354098 CCER1Q8TC90 406 aaPredicted RBP32.24■■■□□ 2.75
SHMT1-203ENST00000354098 NEXMIFQ5QGS0 1516 aa32.23■■■□□ 2.75
SHMT1-203ENST00000354098 POLR1AO95602 1720 aaPredicted RBP32.23■■■□□ 2.75
SHMT1-203ENST00000354098 SENP3Q9H4L4 574 aaPredicted RBP32.22■■■□□ 2.75
SHMT1-203ENST00000354098 HDGFP51858 240 aaKnown RBP32.21■■■□□ 2.75
SHMT1-203ENST00000354098 RPGRIP1LQ68CZ1 1315 aa32.21■■■□□ 2.75
SHMT1-203ENST00000354098 PPP1R15AO75807 674 aaPredicted RBP32.21■■■□□ 2.75
SHMT1-203ENST00000354098 ABCF1Q8NE71 845 aaKnown RBP eCLIP32.21■■■□□ 2.75
SHMT1-203ENST00000354098 MED14O60244 1454 aa32.18■■■□□ 2.74
SHMT1-203ENST00000354098 NPHP4O75161 1426 aaPredicted RBP32.17■■■□□ 2.74
SHMT1-203ENST00000354098 PPLO60437 1756 aa32.15■■■□□ 2.74
SHMT1-203ENST00000354098 PLEKHG1Q9ULL1 1385 aa32.12■■■□□ 2.73
SHMT1-203ENST00000354098 VGFO15240 615 aaPredicted RBP32.12■■■□□ 2.73
SHMT1-203ENST00000354098 DMRT2Q9Y5R5 561 aa32.12■■■□□ 2.73
SHMT1-203ENST00000354098 IFT172Q9UG01 1749 aa32.12■■■□□ 2.73
SHMT1-203ENST00000354098 CLSPNQ9HAW4 1339 aa32.12■■■□□ 2.73
SHMT1-203ENST00000354098 DCAF11Q8TEB1 546 aa32.11■■■□□ 2.73
SHMT1-203ENST00000354098 BCANQ96GW7 911 aa32.11■■■□□ 2.73
SHMT1-203ENST00000354098 IQGAP1P46940 1657 aa32.11■■■□□ 2.73
SHMT1-203ENST00000354098 ADGRF5Q8IZF2 1346 aa32.1■■■□□ 2.73
SHMT1-203ENST00000354098 KDM2AQ9Y2K7 1162 aa32.09■■■□□ 2.73
SHMT1-203ENST00000354098 L3MBTL2Q969R5 705 aa32.08■■■□□ 2.73
SHMT1-203ENST00000354098 SLC26A8Q96RN1 970 aa32.08■■■□□ 2.73
SHMT1-203ENST00000354098 MYOM2P54296 1465 aa32.02■■■□□ 2.72
SHMT1-203ENST00000354098 ADAMTS13Q76LX8 1427 aa32.02■■■□□ 2.72
SHMT1-203ENST00000354098 NRXN3Q9Y4C0 1643 aa32.01■■■□□ 2.72
SHMT1-203ENST00000354098 SETBP1Q9Y6X0 1596 aa32■■■□□ 2.71
SHMT1-203ENST00000354098 TONSLQ96HA7 1378 aa32■■■□□ 2.71
SHMT1-203ENST00000354098 NRXN1Q9ULB1 1477 aa31.98■■■□□ 2.71
SHMT1-203ENST00000354098 PIK3C2GO75747 1445 aa31.97■■■□□ 2.71
SHMT1-203ENST00000354098 TBX22Q9Y458 520 aa31.96■■■□□ 2.71
SHMT1-203ENST00000354098 STAC3Q96MF2 364 aa31.95■■■□□ 2.71
SHMT1-203ENST00000354098 ZNF335Q9H4Z2 1342 aaPredicted RBP31.93■■■□□ 2.7
SHMT1-203ENST00000354098 ALKQ9UM73 1620 aa31.92■■■□□ 2.7
SHMT1-203ENST00000354098 CFAP70Q5T0N1 1121 aa31.9■■■□□ 2.7
SHMT1-203ENST00000354098 DIP2AQ14689 1571 aa31.9■■■□□ 2.7
SHMT1-203ENST00000354098 METP08581 1390 aa31.9■■■□□ 2.7
SHMT1-203ENST00000354098 C14orf93Q9H972 538 aaKnown RBP31.89■■■□□ 2.7
SHMT1-203ENST00000354098 PRAG1Q86YV5 1406 aa31.87■■■□□ 2.69
SHMT1-203ENST00000354098 SETD1AO15047 1707 aaKnown RBP31.87■■■□□ 2.69
SHMT1-203ENST00000354098 TMEM132EQ6IEE7 984 aa31.83■■■□□ 2.69
SHMT1-203ENST00000354098 PTPRUQ92729 1446 aa31.83■■■□□ 2.69
SHMT1-203ENST00000354098 NBPF8Q3BBV2 869 aa31.82■■■□□ 2.68
SHMT1-203ENST00000354098 TIMELESSQ9UNS1 1208 aa31.82■■■□□ 2.68
SHMT1-203ENST00000354098 STRCP1A6NGW2 1772 aa31.81■■■□□ 2.68
SHMT1-203ENST00000354098 KCNA6P17658 529 aa31.81■■■□□ 2.68
SHMT1-203ENST00000354098 PIK3R4Q99570 1358 aa31.8■■■□□ 2.68
SHMT1-203ENST00000354098 ASXL1Q8IXJ9 1541 aa31.8■■■□□ 2.68
SHMT1-203ENST00000354098 AMOTL2Q9Y2J4 779 aa31.79■■■□□ 2.68
SHMT1-203ENST00000354098 CHD2O14647 1828 aaKnown RBP31.79■■■□□ 2.68
SHMT1-203ENST00000354098 LAMC1P11047 1609 aa31.77■■■□□ 2.68
SHMT1-203ENST00000354098 LTBP4Q8N2S1 1624 aa31.77■■■□□ 2.68
SHMT1-203ENST00000354098 NBPF1Q3BBV0 1214 aa31.75■■■□□ 2.67
SHMT1-203ENST00000354098 NWD1Q149M9 1564 aa31.75■■■□□ 2.67
SHMT1-203ENST00000354098 STK26Q9P289 416 aa31.73■■■□□ 2.67
SHMT1-203ENST00000354098 ADGRB1O14514 1584 aa31.72■■■□□ 2.67
SHMT1-203ENST00000354098 XRN1Q8IZH2 1706 aaKnown RBP31.7■■■□□ 2.66
SHMT1-203ENST00000354098 KIAA1210Q9ULL0 1709 aa31.7■■■□□ 2.66
SHMT1-203ENST00000354098 YTHDC2Q9H6S0 1430 aaKnown RBP31.7■■■□□ 2.66
SHMT1-203ENST00000354098 TRPM1Q7Z4N2 1603 aa31.69■■■□□ 2.66
SHMT1-203ENST00000354098 RBM33Q96EV2 1170 aaKnown RBP31.69■■■□□ 2.66
SHMT1-203ENST00000354098 LRPPRCP42704 1394 aaKnown RBP31.68■■■□□ 2.66
SHMT1-203ENST00000354098 CPS1P31327 1500 aa31.68■■■□□ 2.66
SHMT1-203ENST00000354098 PROSER2Q86WR7 435 aaPredicted RBP31.67■■■□□ 2.66
SHMT1-203ENST00000354098 NKTRP30414 1462 aaKnown RBP31.66■■■□□ 2.66
SHMT1-203ENST00000354098 LRRC7Q96NW7 1537 aa31.65■■■□□ 2.66
SHMT1-203ENST00000354098 ABCC11Q96J66 1382 aa31.64■■■□□ 2.66
SHMT1-203ENST00000354098 ROBO2Q9HCK4 1378 aa31.64■■■□□ 2.65
SHMT1-203ENST00000354098 ROCK2O75116 1388 aaKnown RBP31.62■■■□□ 2.65
SHMT1-203ENST00000354098 TRAK1Q9UPV9 953 aa31.62■■■□□ 2.65
SHMT1-203ENST00000354098 TMEM94Q12767 1356 aa31.61■■■□□ 2.65
SHMT1-203ENST00000354098 TECPR2O15040 1411 aa31.6■■■□□ 2.65
SHMT1-203ENST00000354098 RALGAPBQ86X10 1494 aa31.6■■■□□ 2.65
SHMT1-203ENST00000354098 PTCH1Q13635 1447 aa31.59■■■□□ 2.65
SHMT1-203ENST00000354098 WAPLQ7Z5K2 1190 aa31.58■■■□□ 2.65
SHMT1-203ENST00000354098 CERKQ8TCT0 537 aa31.58■■■□□ 2.65
SHMT1-203ENST00000354098 KNDC1Q76NI1 1749 aa31.56■■■□□ 2.64
SHMT1-203ENST00000354098 GPRASP1Q5JY77 1395 aa31.55■■■□□ 2.64
SHMT1-203ENST00000354098 PLEKHH1Q9ULM0 1364 aa31.55■■■□□ 2.64
SHMT1-203ENST00000354098 XIRP1Q702N8 1843 aaKnown RBP31.55■■■□□ 2.64
SHMT1-203ENST00000354098 CARD11Q9BXL7 1154 aa31.54■■■□□ 2.64
SHMT1-203ENST00000354098 SIRT1Q96EB6 747 aa31.52■■■□□ 2.64
SHMT1-203ENST00000354098 PRAM1Q96QH2 718 aa31.52■■■□□ 2.64
SHMT1-203ENST00000354098 DLC1Q96QB1 1528 aa31.51■■■□□ 2.64
SHMT1-203ENST00000354098 FAM135BQ49AJ0 1406 aa31.5■■■□□ 2.63
SHMT1-203ENST00000354098 SAFB2Q14151 953 aaKnown RBP eCLIP31.5■■■□□ 2.63
SHMT1-203ENST00000354098 C14orf37Q86TY3 774 aa31.49■■■□□ 2.63
SHMT1-203ENST00000354098 POGKQ9P215 609 aa31.48■■■□□ 2.63
SHMT1-203ENST00000354098 ARHGEF28Q8N1W1 1705 aaKnown RBP31.47■■■□□ 2.63
SHMT1-203ENST00000354098 NCOA3Q9Y6Q9 1424 aa31.47■■■□□ 2.63
SHMT1-203ENST00000354098 SIPA1L2Q9P2F8 1722 aaPredicted RBP31.43■■■□□ 2.62
SHMT1-203ENST00000354098 IQSEC2Q5JU85 1478 aa31.43■■■□□ 2.62
SHMT1-203ENST00000354098 C19orf44Q9H6X5 657 aa31.42■■■□□ 2.62
SHMT1-203ENST00000354098 ADGRL3Q9HAR2 1447 aa31.42■■■□□ 2.62
SHMT1-203ENST00000354098 NALCNQ8IZF0 1738 aa31.42■■■□□ 2.62
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms