RNA–Protein interactions for RNA: ENST00000353317.9

TRIM55-204, Transcript of tripartite motif containing 55, humanhuman

TSL 1 (best) BASIC

Gene TRIM55, Length 2,624 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM55-204ENST00000353317 CHGAP10645 457 aaKnown RBP11.88□□□□□ -0.51
TRIM55-204ENST00000353317 ADGRB3O60242 1522 aa11.87□□□□□ -0.51
TRIM55-204ENST00000353317 RBM19Q9Y4C8 960 aaKnown RBP11.87□□□□□ -0.51
TRIM55-204ENST00000353317 ROCK2O75116 1388 aaKnown RBP11.86□□□□□ -0.51
TRIM55-204ENST00000353317 NUTM2DQ5VT03 806 aaPredicted RBP11.86□□□□□ -0.51
TRIM55-204ENST00000353317 NEURL4Q96JN8 1562 aa11.86□□□□□ -0.51
TRIM55-204ENST00000353317 ARID4BQ4LE39 1312 aaPredicted RBP11.86□□□□□ -0.51
TRIM55-204ENST00000353317 PPLO60437 1756 aa11.85□□□□□ -0.51
TRIM55-204ENST00000353317 ST20-MTHFSA0A0A6YYL1 179 aa11.85□□□□□ -0.51
TRIM55-204ENST00000353317 ERVK-7P63135 1459 aa11.84□□□□□ -0.51
TRIM55-204ENST00000353317 GPRASP1Q5JY77 1395 aa11.84□□□□□ -0.51
TRIM55-204ENST00000353317 KIF7Q2M1P5 1343 aa11.84□□□□□ -0.51
TRIM55-204ENST00000353317 CFAP70Q5T0N1 1121 aa11.83□□□□□ -0.52
TRIM55-204ENST00000353317 SENP3Q9H4L4 574 aaPredicted RBP11.83□□□□□ -0.52
TRIM55-204ENST00000353317 ZMYM3Q14202 1370 aa11.83□□□□□ -0.52
TRIM55-204ENST00000353317 CCDC7Q96M83 1385 aa11.83□□□□□ -0.52
TRIM55-204ENST00000353317 HNRNPUQ00839 825 aaKnown RBP eCLIP11.83□□□□□ -0.52
TRIM55-204ENST00000353317 PPP6R1Q9UPN7 881 aa11.83□□□□□ -0.52
TRIM55-204ENST00000353317 POLR1AO95602 1720 aaPredicted RBP11.83□□□□□ -0.52
TRIM55-204ENST00000353317 TMEM131LA2VDJ0 1609 aa11.83□□□□□ -0.52
TRIM55-204ENST00000353317 CEBPAP49715 358 aaPredicted RBP11.81□□□□□ -0.52
TRIM55-204ENST00000353317 NRXN1Q9ULB1 1477 aa11.81□□□□□ -0.52
TRIM55-204ENST00000353317 NEXMIFQ5QGS0 1516 aa11.81□□□□□ -0.52
TRIM55-204ENST00000353317 MYOM2P54296 1465 aa11.81□□□□□ -0.52
TRIM55-204ENST00000353317 SPATA31D1Q6ZQQ2 1576 aa11.8□□□□□ -0.52
TRIM55-204ENST00000353317 LAMC1P11047 1609 aa11.8□□□□□ -0.52
TRIM55-204ENST00000353317 SLC52A1Q9NWF4 448 aa11.8□□□□□ -0.52
TRIM55-204ENST00000353317 TESK2Q96S53 571 aa11.79□□□□□ -0.52
TRIM55-204ENST00000353317 IQGAP1P46940 1657 aa11.79□□□□□ -0.52
TRIM55-204ENST00000353317 KIAA1210Q9ULL0 1709 aa11.78□□□□□ -0.52
TRIM55-204ENST00000353317 IRX6P78412 446 aaPredicted RBP11.77□□□□□ -0.52
TRIM55-204ENST00000353317 PIK3C2GO75747 1445 aa11.77□□□□□ -0.52
TRIM55-204ENST00000353317 TMEM132EQ6IEE7 984 aa11.77□□□□□ -0.53
TRIM55-204ENST00000353317 STAC3Q96MF2 364 aa11.76□□□□□ -0.53
TRIM55-204ENST00000353317 CCDC184Q52MB2 194 aa11.76□□□□□ -0.53
TRIM55-204ENST00000353317 PLPPR3Q6T4P5 718 aa11.76□□□□□ -0.53
TRIM55-204ENST00000353317 POLR3GLQ9BT43 218 aa11.76□□□□□ -0.53
TRIM55-204ENST00000353317 DISP3Q9P2K9 1392 aa11.76□□□□□ -0.53
TRIM55-204ENST00000353317 ESF1Q9H501 851 aaKnown RBP11.75□□□□□ -0.53
TRIM55-204ENST00000353317 C3P01024 1663 aa11.75□□□□□ -0.53
TRIM55-204ENST00000353317 A2ML1A8K2U0 1454 aa11.75□□□□□ -0.53
TRIM55-204ENST00000353317 FER1L4A9Z1Z3 1794 aa11.75□□□□□ -0.53
TRIM55-204ENST00000353317 RPGRIP1LQ68CZ1 1315 aa11.75□□□□□ -0.53
TRIM55-204ENST00000353317 C14orf93Q9H972 538 aaKnown RBP11.75□□□□□ -0.53
TRIM55-204ENST00000353317 ADGRB1O14514 1584 aa11.74□□□□□ -0.53
TRIM55-204ENST00000353317 SCAF11Q99590 1463 aaKnown RBP11.73□□□□□ -0.53
TRIM55-204ENST00000353317 MSH5O43196 834 aa11.73□□□□□ -0.53
TRIM55-204ENST00000353317 ASXL1Q8IXJ9 1541 aa11.72□□□□□ -0.53
TRIM55-204ENST00000353317 VGFO15240 615 aaPredicted RBP11.72□□□□□ -0.53
TRIM55-204ENST00000353317 PRKRIP1Q9H875 184 aaPredicted RBP11.72□□□□□ -0.53
TRIM55-204ENST00000353317 TNRQ92752 1358 aa11.71□□□□□ -0.53
TRIM55-204ENST00000353317 STAG3Q9UJ98 1225 aa11.71□□□□□ -0.53
TRIM55-204ENST00000353317 TRAK1Q9UPV9 953 aa11.71□□□□□ -0.54
TRIM55-204ENST00000353317 UBR1Q8IWV7 1749 aa11.7□□□□□ -0.54
TRIM55-204ENST00000353317 ZFYVE9O95405 1425 aa11.7□□□□□ -0.54
TRIM55-204ENST00000353317 SETBP1Q9Y6X0 1596 aa11.7□□□□□ -0.54
TRIM55-204ENST00000353317 FAM9BQ8IZU0 186 aa11.69□□□□□ -0.54
TRIM55-204ENST00000353317 RIMS2Q9UQ26 1411 aa11.69□□□□□ -0.54
TRIM55-204ENST00000353317 CNGB1Q14028 1251 aaPredicted RBP11.68□□□□□ -0.54
TRIM55-204ENST00000353317 PTPRMP28827 1452 aa11.68□□□□□ -0.54
TRIM55-204ENST00000353317 RIMS1Q86UR5 1692 aaKnown RBP11.68□□□□□ -0.54
TRIM55-204ENST00000353317 NRXN3Q9Y4C0 1643 aa11.67□□□□□ -0.54
TRIM55-204ENST00000353317 ERICH6BQ5W0A0 696 aa11.67□□□□□ -0.54
TRIM55-204ENST00000353317 MRS2Q9HD23 443 aa11.67□□□□□ -0.54
TRIM55-204ENST00000353317 SETD1AO15047 1707 aaKnown RBP11.67□□□□□ -0.54
TRIM55-204ENST00000353317 FANCIQ9NVI1 1328 aa11.67□□□□□ -0.54
TRIM55-204ENST00000353317 ALKQ9UM73 1620 aa11.67□□□□□ -0.54
TRIM55-204ENST00000353317 ADAMTSL3P82987 1691 aa11.66□□□□□ -0.54
TRIM55-204ENST00000353317 ARHGEF28Q8N1W1 1705 aaKnown RBP11.66□□□□□ -0.54
TRIM55-204ENST00000353317 MYO3AQ8NEV4 1616 aa11.66□□□□□ -0.54
TRIM55-204ENST00000353317 LTKP29376 864 aa11.66□□□□□ -0.54
TRIM55-204ENST00000353317 PPP4R2Q9NY27 417 aa11.66□□□□□ -0.54
TRIM55-204ENST00000353317 STK26Q9P289 416 aa11.66□□□□□ -0.54
TRIM55-204ENST00000353317 TMF1P82094 1093 aa11.65□□□□□ -0.54
TRIM55-204ENST00000353317 ZBED9Q6R2W3 1325 aa11.65□□□□□ -0.54
TRIM55-204ENST00000353317 PER1O15534 1290 aaPredicted RBP11.64□□□□□ -0.55
TRIM55-204ENST00000353317 QRICH2Q9H0J4 1663 aa11.64□□□□□ -0.55
TRIM55-204ENST00000353317 TMEM2Q9UHN6 1383 aa11.64□□□□□ -0.55
TRIM55-204ENST00000353317 KDM5AP29375 1690 aaKnown RBP11.64□□□□□ -0.55
TRIM55-204ENST00000353317 MYOM1P52179 1685 aa11.64□□□□□ -0.55
TRIM55-204ENST00000353317 SAFB2Q14151 953 aaKnown RBP eCLIP11.63□□□□□ -0.55
TRIM55-204ENST00000353317 CENPJQ9HC77 1338 aaPredicted RBP11.63□□□□□ -0.55
TRIM55-204ENST00000353317 METP08581 1390 aa11.62□□□□□ -0.55
TRIM55-204ENST00000353317 B4GALNT3Q6L9W6 998 aa11.62□□□□□ -0.55
TRIM55-204ENST00000353317 BCL11AQ9H165 835 aa11.62□□□□□ -0.55
TRIM55-204ENST00000353317 PANK3Q9H999 370 aa11.62□□□□□ -0.55
TRIM55-204ENST00000353317 NLRP1Q9C000 1473 aa11.62□□□□□ -0.55
TRIM55-204ENST00000353317 EIF3AQ14152 1382 aaKnown RBP11.62□□□□□ -0.55
TRIM55-204ENST00000353317 YTHDC2Q9H6S0 1430 aaKnown RBP11.61□□□□□ -0.55
TRIM55-204ENST00000353317 ADAMTS13Q76LX8 1427 aa11.59□□□□□ -0.55
TRIM55-204ENST00000353317 TULP4Q9NRJ4 1543 aa11.59□□□□□ -0.55
TRIM55-204ENST00000353317 WAPLQ7Z5K2 1190 aa11.59□□□□□ -0.55
TRIM55-204ENST00000353317 PLEKHH1Q9ULM0 1364 aa11.59□□□□□ -0.55
TRIM55-204ENST00000353317 SBNO2Q9Y2G9 1366 aa11.59□□□□□ -0.55
TRIM55-204ENST00000353317 TXNDC2Q86VQ3 553 aa11.58□□□□□ -0.55
TRIM55-204ENST00000353317 PRAM1Q96QH2 718 aa11.58□□□□□ -0.55
TRIM55-204ENST00000353317 ARHGAP23Q9P227 1491 aa11.58□□□□□ -0.56
TRIM55-204ENST00000353317 ABCF1Q8NE71 845 aaKnown RBP eCLIP11.57□□□□□ -0.56
TRIM55-204ENST00000353317 SETD1BQ9UPS6 1966 aaKnown RBP11.57□□□□□ -0.56
TRIM55-204ENST00000353317 SLC26A8Q96RN1 970 aa11.57□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms