RNA–Protein interactions for RNA: ENST00000350028.4

SAMM50-201, Transcript of SAMM50 sorting and assembly machinery component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SAMM50, Length 1,717 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SAMM50-201ENST00000350028 ADGRB3O60242 1522 aa22.73■■□□□ 1.23
SAMM50-201ENST00000350028 MROH2AA6NES4 1674 aa22.72■■□□□ 1.23
SAMM50-201ENST00000350028 ZBED9Q6R2W3 1325 aa22.72■■□□□ 1.23
SAMM50-201ENST00000350028 MYBBP1AQ9BQG0 1328 aaKnown RBP22.72■■□□□ 1.23
SAMM50-201ENST00000350028 CAMSAP1Q5T5Y3 1602 aa22.72■■□□□ 1.23
SAMM50-201ENST00000350028 BRD4O60885 1362 aaPredicted RBP22.71■■□□□ 1.23
SAMM50-201ENST00000350028 EIF3AQ14152 1382 aaKnown RBP22.71■■□□□ 1.23
SAMM50-201ENST00000350028 PER1O15534 1290 aaPredicted RBP22.71■■□□□ 1.23
SAMM50-201ENST00000350028 CNGB1Q14028 1251 aaPredicted RBP22.71■■□□□ 1.23
SAMM50-201ENST00000350028 NRXN1Q9ULB1 1477 aa22.7■■□□□ 1.22
SAMM50-201ENST00000350028 FKBP8Q14318 412 aa22.7■■□□□ 1.22
SAMM50-201ENST00000350028 CDCA8Q53HL2 280 aa22.7■■□□□ 1.22
SAMM50-201ENST00000350028 TMC1Q8TDI8 760 aa22.69■■□□□ 1.22
SAMM50-201ENST00000350028 ZC3H13Q5T200 1668 aaKnown RBP22.69■■□□□ 1.22
SAMM50-201ENST00000350028 SLC24A1O60721 1099 aa22.68■■□□□ 1.22
SAMM50-201ENST00000350028 PELP1Q8IZL8 1130 aaKnown RBP22.68■■□□□ 1.22
SAMM50-201ENST00000350028 ADGRF5Q8IZF2 1346 aa22.67■■□□□ 1.22
SAMM50-201ENST00000350028 PARD3Q8TEW0 1356 aa22.67■■□□□ 1.22
SAMM50-201ENST00000350028 NOS1P29475 1434 aa22.67■■□□□ 1.22
SAMM50-201ENST00000350028 ARHGAP31Q2M1Z3 1444 aa22.67■■□□□ 1.22
SAMM50-201ENST00000350028 RPGRIP1LQ68CZ1 1315 aa22.67■■□□□ 1.22
SAMM50-201ENST00000350028 PNISRQ8TF01 805 aaKnown RBP22.66■■□□□ 1.22
SAMM50-201ENST00000350028 SIGLEC1Q9BZZ2 1709 aa22.66■■□□□ 1.22
SAMM50-201ENST00000350028 CFAP65Q6ZU64 1925 aaKnown RBP22.66■■□□□ 1.22
SAMM50-201ENST00000350028 CFAP70Q5T0N1 1121 aa22.65■■□□□ 1.22
SAMM50-201ENST00000350028 PANK3Q9H999 370 aa22.65■■□□□ 1.22
SAMM50-201ENST00000350028 PPLO60437 1756 aa22.64■■□□□ 1.21
SAMM50-201ENST00000350028 ARHGEF40Q8TER5 1519 aa22.64■■□□□ 1.21
SAMM50-201ENST00000350028 CHGAP10645 457 aaKnown RBP22.63■■□□□ 1.21
SAMM50-201ENST00000350028 NLRP13Q86W25 1043 aa22.62■■□□□ 1.21
SAMM50-201ENST00000350028 SETBP1Q9Y6X0 1596 aa22.62■■□□□ 1.21
SAMM50-201ENST00000350028 PIK3C2BO00750 1634 aa22.61■■□□□ 1.21
SAMM50-201ENST00000350028 LRPPRCP42704 1394 aaKnown RBP22.6■■□□□ 1.21
SAMM50-201ENST00000350028 SYNMO15061 1565 aa22.59■■□□□ 1.21
SAMM50-201ENST00000350028 REREQ9P2R6 1566 aa22.58■■□□□ 1.2
SAMM50-201ENST00000350028 MYO3AQ8NEV4 1616 aa22.57■■□□□ 1.2
SAMM50-201ENST00000350028 PIK3C2GO75747 1445 aa22.56■■□□□ 1.2
SAMM50-201ENST00000350028 C14orf93Q9H972 538 aaKnown RBP22.56■■□□□ 1.2
SAMM50-201ENST00000350028 KDM5AP29375 1690 aaKnown RBP22.56■■□□□ 1.2
SAMM50-201ENST00000350028 SLC52A1Q9NWF4 448 aa22.54■■□□□ 1.2
SAMM50-201ENST00000350028 SBNO2Q9Y2G9 1366 aa22.54■■□□□ 1.2
SAMM50-201ENST00000350028 CC2D1BQ5T0F9 858 aaKnown RBP22.52■■□□□ 1.2
SAMM50-201ENST00000350028 KNSTRNQ9Y448 316 aa22.52■■□□□ 1.2
SAMM50-201ENST00000350028 AGLP35573 1532 aa22.51■■□□□ 1.19
SAMM50-201ENST00000350028 VGFO15240 615 aaPredicted RBP22.51■■□□□ 1.19
SAMM50-201ENST00000350028 BCANQ96GW7 911 aa22.51■■□□□ 1.19
SAMM50-201ENST00000350028 PPP6R1Q9UPN7 881 aa22.51■■□□□ 1.19
SAMM50-201ENST00000350028 SMG6Q86US8 1419 aaKnown RBP22.51■■□□□ 1.19
SAMM50-201ENST00000350028 MYOM1P52179 1685 aa22.5■■□□□ 1.19
SAMM50-201ENST00000350028 ERVK-7P63135 1459 aa22.5■■□□□ 1.19
SAMM50-201ENST00000350028 PREX1Q8TCU6 1659 aa22.5■■□□□ 1.19
SAMM50-201ENST00000350028 ERICH6BQ5W0A0 696 aa22.5■■□□□ 1.19
SAMM50-201ENST00000350028 NEXMIFQ5QGS0 1516 aa22.49■■□□□ 1.19
SAMM50-201ENST00000350028 INSRP06213 1382 aa22.49■■□□□ 1.19
SAMM50-201ENST00000350028 ADGRB1O14514 1584 aa22.49■■□□□ 1.19
SAMM50-201ENST00000350028 NPC1L1Q9UHC9 1359 aa22.48■■□□□ 1.19
SAMM50-201ENST00000350028 IDI1Q13907 227 aa22.48■■□□□ 1.19
SAMM50-201ENST00000350028 CENPJQ9HC77 1338 aaPredicted RBP22.48■■□□□ 1.19
SAMM50-201ENST00000350028 ZFYVE9O95405 1425 aa22.47■■□□□ 1.19
SAMM50-201ENST00000350028 ASXL1Q8IXJ9 1541 aa22.46■■□□□ 1.19
SAMM50-201ENST00000350028 AMER1Q5JTC6 1135 aaPredicted RBP22.45■■□□□ 1.19
SAMM50-201ENST00000350028 NUDCQ9Y266 331 aa22.45■■□□□ 1.18
SAMM50-201ENST00000350028 TRAK1Q9UPV9 953 aa22.42■■□□□ 1.18
SAMM50-201ENST00000350028 TMEM131LA2VDJ0 1609 aa22.41■■□□□ 1.18
SAMM50-201ENST00000350028 QRICH2Q9H0J4 1663 aa22.41■■□□□ 1.18
SAMM50-201ENST00000350028 TMEM132EQ6IEE7 984 aa22.39■■□□□ 1.17
SAMM50-201ENST00000350028 PPP2R1AP30153 589 aa22.38■■□□□ 1.17
SAMM50-201ENST00000350028 MYO5BQ9ULV0 1848 aa22.38■■□□□ 1.17
SAMM50-201ENST00000350028 MLECQ14165 292 aa22.37■■□□□ 1.17
SAMM50-201ENST00000350028 PUS7Q96PZ0 661 aaKnown RBP22.37■■□□□ 1.17
SAMM50-201ENST00000350028 BLMP54132 1417 aaPredicted RBP22.36■■□□□ 1.17
SAMM50-201ENST00000350028 PDE3BQ13370 1112 aa22.35■■□□□ 1.17
SAMM50-201ENST00000350028 CLTCQ00610 1675 aaKnown RBP22.35■■□□□ 1.17
SAMM50-201ENST00000350028 NUTM2DQ5VT03 806 aaPredicted RBP22.34■■□□□ 1.17
SAMM50-201ENST00000350028 FBXO31Q5XUX0 539 aaPredicted RBP22.34■■□□□ 1.17
SAMM50-201ENST00000350028 ARHGEF28Q8N1W1 1705 aaKnown RBP22.34■■□□□ 1.17
SAMM50-201ENST00000350028 IRX6P78412 446 aaPredicted RBP22.34■■□□□ 1.17
SAMM50-201ENST00000350028 PPP4R2Q9NY27 417 aa22.31■■□□□ 1.16
SAMM50-201ENST00000350028 SPATA31D1Q6ZQQ2 1576 aa22.31■■□□□ 1.16
SAMM50-201ENST00000350028 RNF123Q5XPI4 1314 aa22.31■■□□□ 1.16
SAMM50-201ENST00000350028 CARD14Q9BXL6 1004 aa22.31■■□□□ 1.16
SAMM50-201ENST00000350028 EVC2Q86UK5 1308 aa22.29■■□□□ 1.16
SAMM50-201ENST00000350028 WDR43Q15061 677 aaKnown RBP eCLIP22.27■■□□□ 1.16
SAMM50-201ENST00000350028 STAG3Q9UJ98 1225 aa22.27■■□□□ 1.16
SAMM50-201ENST00000350028 SENP3-EIF4A1A0A087X0R7 540 aa22.26■■□□□ 1.15
SAMM50-201ENST00000350028 TSHZ2Q9NRE2 1034 aa22.25■■□□□ 1.15
SAMM50-201ENST00000350028 ADAMTS8Q9UP79 889 aa22.25■■□□□ 1.15
SAMM50-201ENST00000350028 TULP4Q9NRJ4 1543 aa22.23■■□□□ 1.15
SAMM50-201ENST00000350028 A2ML1A8K2U0 1454 aa22.23■■□□□ 1.15
SAMM50-201ENST00000350028 SLC12A5Q9H2X9 1139 aa22.23■■□□□ 1.15
SAMM50-201ENST00000350028 USP32Q8NFA0 1604 aa22.22■■□□□ 1.15
SAMM50-201ENST00000350028 NSD3Q9BZ95 1437 aa22.22■■□□□ 1.15
SAMM50-201ENST00000350028 ALKQ9UM73 1620 aa22.22■■□□□ 1.15
SAMM50-201ENST00000350028 ESF1Q9H501 851 aaKnown RBP22.21■■□□□ 1.15
SAMM50-201ENST00000350028 SALL2Q9Y467 1007 aaPredicted RBP22.21■■□□□ 1.15
SAMM50-201ENST00000350028 YTHDC2Q9H6S0 1430 aaKnown RBP22.21■■□□□ 1.15
SAMM50-201ENST00000350028 FER1L4A9Z1Z3 1794 aa22.2■■□□□ 1.14
SAMM50-201ENST00000350028 PTPRMP28827 1452 aa22.2■■□□□ 1.14
SAMM50-201ENST00000350028 STK26Q9P289 416 aa22.19■■□□□ 1.14
SAMM50-201ENST00000350028 NINLQ9Y2I6 1382 aa22.19■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms