RNA–Protein interactions for RNA: ENST00000349703.6

RFC1-201, Transcript of replication factor C subunit 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene RFC1, Length 4,859 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC1-201ENST00000349703 RNF187Q5TA31 235 aaPredicted RBP7.66□□□□□ -1.18
RFC1-201ENST00000349703 ZSCAN29Q8IWY8 852 aaPredicted RBP7.66□□□□□ -1.18
RFC1-201ENST00000349703 BEGAINQ9BUH8 593 aa7.66□□□□□ -1.18
RFC1-201ENST00000349703 TMA7Q9Y2S6 64 aaKnown RBP7.66□□□□□ -1.18
RFC1-201ENST00000349703 C6orf229H3BNL8 230 aa7.65□□□□□ -1.18
RFC1-201ENST00000349703 DDX11L8A8MPP1 907 aa7.65□□□□□ -1.18
RFC1-201ENST00000349703 GRM1Q13255 1194 aa7.65□□□□□ -1.18
RFC1-201ENST00000349703 PPP1R14AQ96A00 147 aa7.65□□□□□ -1.19
RFC1-201ENST00000349703 PPP4R2Q9NY27 417 aa7.65□□□□□ -1.19
RFC1-201ENST00000349703 FAM13BQ9NYF5 915 aa7.65□□□□□ -1.19
RFC1-201ENST00000349703 RRP12Q5JTH9 1297 aaKnown RBP7.64□□□□□ -1.19
RFC1-201ENST00000349703 WDR75Q8IWA0 830 aaKnown RBP7.64□□□□□ -1.19
RFC1-201ENST00000349703 BRD2P25440 801 aaKnown RBP7.64□□□□□ -1.19
RFC1-201ENST00000349703 DNAJA1P31689 397 aaKnown RBP7.64□□□□□ -1.19
RFC1-201ENST00000349703 IGBP1P78318 339 aa7.64□□□□□ -1.19
RFC1-201ENST00000349703 VPS8Q8N3P4 1428 aa7.64□□□□□ -1.19
RFC1-201ENST00000349703 MAPK8P45983 427 aa7.64□□□□□ -1.19
RFC1-201ENST00000349703 TRIM52Q96A61 297 aa7.64□□□□□ -1.19
RFC1-201ENST00000349703 FAM117AQ9C073 453 aa7.64□□□□□ -1.19
RFC1-201ENST00000349703 HNRNPUQ00839 825 aaKnown RBP eCLIP7.63□□□□□ -1.19
RFC1-201ENST00000349703 SF3A1Q15459 793 aaKnown RBP7.63□□□□□ -1.19
RFC1-201ENST00000349703 WWC3Q9ULE0 1092 aa7.63□□□□□ -1.19
RFC1-201ENST00000349703 HSP90AA1P07900 732 aaKnown RBP7.62□□□□□ -1.19
RFC1-201ENST00000349703 C3orf67Q6ZVT6 689 aa7.62□□□□□ -1.19
RFC1-201ENST00000349703 TRAK2O60296 914 aa7.62□□□□□ -1.19
RFC1-201ENST00000349703 MAPK1P28482 360 aa7.62□□□□□ -1.19
RFC1-201ENST00000349703 ERCC5P28715 1186 aaPredicted RBP7.62□□□□□ -1.19
RFC1-201ENST00000349703 PPM1FP49593 454 aaPredicted RBP7.62□□□□□ -1.19
RFC1-201ENST00000349703 CAPN10Q9HC96 672 aa7.62□□□□□ -1.19
RFC1-201ENST00000349703 PICK1Q9NRD5 415 aa7.62□□□□□ -1.19
RFC1-201ENST00000349703 TRIM55Q9BYV6 548 aa7.61□□□□□ -1.19
RFC1-201ENST00000349703 MYH16Q9H6N6 1097 aa7.61□□□□□ -1.19
RFC1-201ENST00000349703 GRIPAP1Q4V328 841 aa7.61□□□□□ -1.19
RFC1-201ENST00000349703 EIF4G2P78344 907 aaKnown RBP eCLIP7.6□□□□□ -1.19
RFC1-201ENST00000349703 ANO8Q9HCE9 1232 aaPredicted RBP7.6□□□□□ -1.19
RFC1-201ENST00000349703 CHMP4AQ9BY43 222 aa7.6□□□□□ -1.19
RFC1-201ENST00000349703 PHF8Q9UPP1 1060 aa7.6□□□□□ -1.19
RFC1-201ENST00000349703 PPP1R15AO75807 674 aaPredicted RBP7.59□□□□□ -1.19
RFC1-201ENST00000349703 SLFNL1Q499Z3 407 aa7.59□□□□□ -1.19
RFC1-201ENST00000349703 HDGFL1Q5TGJ6 251 aa7.59□□□□□ -1.19
RFC1-201ENST00000349703 TONSLQ96HA7 1378 aa7.59□□□□□ -1.19
RFC1-201ENST00000349703 SMARCA5O60264 1052 aaPredicted RBP7.59□□□□□ -1.19
RFC1-201ENST00000349703 MARSP56192 900 aaKnown RBP7.59□□□□□ -1.19
RFC1-201ENST00000349703 HSP90AB2PQ58FF8 381 aa7.59□□□□□ -1.19
RFC1-201ENST00000349703 CCDC102AQ96A19 550 aa7.59□□□□□ -1.19
RFC1-201ENST00000349703 TRIM66O15016 1216 aa7.59□□□□□ -1.19
RFC1-201ENST00000349703 SSBP05455 408 aaKnown RBP eCLIP7.59□□□□□ -1.19
RFC1-201ENST00000349703 DHX57Q6P158 1386 aaKnown RBP7.59□□□□□ -1.2
RFC1-201ENST00000349703 ATP2B1P20020 1258 aa7.58□□□□□ -1.2
RFC1-201ENST00000349703 IQSEC3Q9UPP2 1182 aaPredicted RBP7.58□□□□□ -1.2
RFC1-201ENST00000349703 VRTNQ9H8Y1 702 aa7.58□□□□□ -1.2
RFC1-201ENST00000349703 BAZ1AQ9NRL2 1556 aaPredicted RBP7.58□□□□□ -1.2
RFC1-201ENST00000349703 ZPR1O75312 459 aa7.58□□□□□ -1.2
RFC1-201ENST00000349703 EFCAB3Q8N7B9 438 aa7.58□□□□□ -1.2
RFC1-201ENST00000349703 PPP1R15BQ5SWA1 713 aa7.58□□□□□ -1.2
RFC1-201ENST00000349703 PCDHB9Q9Y5E1 797 aa7.57□□□□□ -1.2
RFC1-201ENST00000349703 KDM4AO75164 1064 aa7.57□□□□□ -1.2
RFC1-201ENST00000349703 TNNT2P45379 298 aaPredicted RBP7.57□□□□□ -1.2
RFC1-201ENST00000349703 BARGINQ6ZT62 677 aa7.57□□□□□ -1.2
RFC1-201ENST00000349703 BAZ1BQ9UIG0 1483 aaKnown RBP7.57□□□□□ -1.2
RFC1-201ENST00000349703 FAM50AQ14320 339 aaKnown RBP7.57□□□□□ -1.2
RFC1-201ENST00000349703 GJA3Q9Y6H8 435 aa7.57□□□□□ -1.2
RFC1-201ENST00000349703 GNPATO15228 680 aa7.56□□□□□ -1.2
RFC1-201ENST00000349703 SKIP12755 728 aa7.56□□□□□ -1.2
RFC1-201ENST00000349703 CLK2P49760 499 aaKnown RBP7.56□□□□□ -1.2
RFC1-201ENST00000349703 RBM46Q8TBY0 533 aaKnown RBP7.56□□□□□ -1.2
RFC1-201ENST00000349703 MINK1Q8N4C8 1332 aaPredicted RBP7.56□□□□□ -1.2
RFC1-201ENST00000349703 STK10O94804 968 aaKnown RBP7.56□□□□□ -1.2
RFC1-201ENST00000349703 NAP1L5Q96NT1 182 aaPredicted RBP7.56□□□□□ -1.2
RFC1-201ENST00000349703 MKNK1Q9BUB5 465 aa7.56□□□□□ -1.2
RFC1-201ENST00000349703 SOGA1O94964 1423 aa7.56□□□□□ -1.2
RFC1-201ENST00000349703 ANO2Q9NQ90 1003 aa7.56□□□□□ -1.2
RFC1-201ENST00000349703 CANXP27824 592 aaKnown RBP7.55□□□□□ -1.2
RFC1-201ENST00000349703 CCDC24Q8N4L8 307 aa7.55□□□□□ -1.2
RFC1-201ENST00000349703 DRC1Q96MC2 740 aa7.55□□□□□ -1.2
RFC1-201ENST00000349703 CCDC88BA6NC98 1476 aa7.55□□□□□ -1.2
RFC1-201ENST00000349703 CCDC157Q569K6 752 aa7.55□□□□□ -1.2
RFC1-201ENST00000349703 ZNF710Q8N1W2 664 aa7.55□□□□□ -1.2
RFC1-201ENST00000349703 DNAJC2Q99543 621 aaKnown RBP7.55□□□□□ -1.2
RFC1-201ENST00000349703 TMEM106CQ9BVX2 250 aa7.55□□□□□ -1.2
RFC1-201ENST00000349703 NACADO15069 1562 aa7.55□□□□□ -1.2
RFC1-201ENST00000349703 CCND1P24385 295 aa7.55□□□□□ -1.2
RFC1-201ENST00000349703 MRFAP1L1Q96HT8 127 aa7.55□□□□□ -1.2
RFC1-201ENST00000349703 EP400NLQ6ZTU2 488 aa7.54□□□□□ -1.2
RFC1-201ENST00000349703 ZNF428Q96B54 188 aa7.54□□□□□ -1.2
RFC1-201ENST00000349703 GIGYF2Q6Y7W6 1299 aaKnown RBP7.54□□□□□ -1.2
RFC1-201ENST00000349703 ZRANB1Q9UGI0 708 aa7.54□□□□□ -1.2
RFC1-201ENST00000349703 MROH2BQ7Z745 1585 aa7.54□□□□□ -1.2
RFC1-201ENST00000349703 SH3BP5O60239 455 aa7.54□□□□□ -1.2
RFC1-201ENST00000349703 SSTR3P32745 418 aaPredicted RBP7.54□□□□□ -1.2
RFC1-201ENST00000349703 CCNB3Q8WWL7 1395 aa7.54□□□□□ -1.2
RFC1-201ENST00000349703 PLCG2P16885 1265 aa7.53□□□□□ -1.2
RFC1-201ENST00000349703 TMEM259Q4ZIN3 620 aa7.53□□□□□ -1.2
RFC1-201ENST00000349703 OXLD1Q5BKU9 147 aa7.53□□□□□ -1.2
RFC1-201ENST00000349703 TMEM87AQ8NBN3 555 aa7.53□□□□□ -1.2
RFC1-201ENST00000349703 ZNF594Q96JF6 807 aaPredicted RBP7.53□□□□□ -1.2
RFC1-201ENST00000349703 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP7.53□□□□□ -1.2
RFC1-201ENST00000349703 PSMD2Q13200 908 aa7.53□□□□□ -1.2
RFC1-201ENST00000349703 CHADLQ6NUI6 762 aa7.53□□□□□ -1.2
RFC1-201ENST00000349703 UTP3Q9NQZ2 479 aaKnown RBP eCLIP7.53□□□□□ -1.26e-8■■■■■ 98.3
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms