RNA–Protein interactions for RNA: ENST00000343599.5

ZNF540-202, Transcript of zinc finger protein 540, humanhuman

APPRIS P3 TSL 5 BASIC

Gene ZNF540, Length 3,073 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-202ENST00000343599 ANKLE2Q86XL3 938 aa11.6□□□□□ -0.55
ZNF540-202ENST00000343599 DAPK1P53355 1430 aa11.59□□□□□ -0.55
ZNF540-202ENST00000343599 KANK1Q14678 1352 aa11.59□□□□□ -0.55
ZNF540-202ENST00000343599 PPLO60437 1756 aa11.59□□□□□ -0.55
ZNF540-202ENST00000343599 ESF1Q9H501 851 aaKnown RBP11.59□□□□□ -0.55
ZNF540-202ENST00000343599 SLC52A1Q9NWF4 448 aa11.58□□□□□ -0.56
ZNF540-202ENST00000343599 MYO5BQ9ULV0 1848 aa11.56□□□□□ -0.56
ZNF540-202ENST00000343599 AMER1Q5JTC6 1135 aaPredicted RBP11.56□□□□□ -0.56
ZNF540-202ENST00000343599 USP54Q70EL1 1684 aa11.56□□□□□ -0.56
ZNF540-202ENST00000343599 FOXD1Q16676 465 aa11.56□□□□□ -0.56
ZNF540-202ENST00000343599 HDGFP51858 240 aaKnown RBP11.55□□□□□ -0.56
ZNF540-202ENST00000343599 TECPR2O15040 1411 aa11.55□□□□□ -0.56
ZNF540-202ENST00000343599 DAXXQ9UER7 740 aaPredicted RBP11.55□□□□□ -0.56
ZNF540-202ENST00000343599 ABCC5O15440 1437 aa11.55□□□□□ -0.56
ZNF540-202ENST00000343599 KIAA1210Q9ULL0 1709 aa11.54□□□□□ -0.56
ZNF540-202ENST00000343599 ABCC6O95255 1503 aa11.54□□□□□ -0.56
ZNF540-202ENST00000343599 DLC1Q96QB1 1528 aa11.54□□□□□ -0.56
ZNF540-202ENST00000343599 COL24A1Q17RW2 1714 aa11.54□□□□□ -0.56
ZNF540-202ENST00000343599 CRYBG1Q9Y4K1 1723 aa11.53□□□□□ -0.56
ZNF540-202ENST00000343599 ABCF1Q8NE71 845 aaKnown RBP eCLIP11.53□□□□□ -0.56
ZNF540-202ENST00000343599 ABCA3Q99758 1704 aa11.53□□□□□ -0.56
ZNF540-202ENST00000343599 JCADQ9P266 1359 aa11.52□□□□□ -0.56
ZNF540-202ENST00000343599 KCNA6P17658 529 aa11.52□□□□□ -0.56
ZNF540-202ENST00000343599 CFDP1Q9UEE9 299 aaPredicted RBP11.52□□□□□ -0.56
ZNF540-202ENST00000343599 RGPD1P0DJD0 1748 aa11.52□□□□□ -0.57
ZNF540-202ENST00000343599 ANKRD30AQ9BXX3 1397 aa11.52□□□□□ -0.57
ZNF540-202ENST00000343599 DISP3Q9P2K9 1392 aa11.52□□□□□ -0.57
ZNF540-202ENST00000343599 AFAP1Q8N556 730 aa11.51□□□□□ -0.57
ZNF540-202ENST00000343599 FMN2Q9NZ56 1722 aa11.51□□□□□ -0.57
ZNF540-202ENST00000343599 QSER1Q2KHR3 1735 aa11.5□□□□□ -0.57
ZNF540-202ENST00000343599 TBX22Q9Y458 520 aa11.49□□□□□ -0.57
ZNF540-202ENST00000343599 SCAF1Q9H7N4 1312 aaKnown RBP11.48□□□□□ -0.57
ZNF540-202ENST00000343599 ASXL1Q8IXJ9 1541 aa11.48□□□□□ -0.57
ZNF540-202ENST00000343599 SIRT1Q96EB6 747 aa11.48□□□□□ -0.57
ZNF540-202ENST00000343599 ITSN1Q15811 1721 aa11.47□□□□□ -0.57
ZNF540-202ENST00000343599 NRXN1Q9ULB1 1477 aa11.46□□□□□ -0.58
ZNF540-202ENST00000343599 NRAPQ86VF7 1730 aa11.45□□□□□ -0.58
ZNF540-202ENST00000343599 ADAMTS13Q76LX8 1427 aa11.45□□□□□ -0.58
ZNF540-202ENST00000343599 HFM1A2PYH4 1435 aa11.44□□□□□ -0.58
ZNF540-202ENST00000343599 CCDC125Q86Z20 511 aa11.44□□□□□ -0.58
ZNF540-202ENST00000343599 RPGRIP1LQ68CZ1 1315 aa11.44□□□□□ -0.58
ZNF540-202ENST00000343599 RREB1Q92766 1687 aa11.43□□□□□ -0.58
ZNF540-202ENST00000343599 DISP2A7MBM2 1401 aa11.43□□□□□ -0.58
ZNF540-202ENST00000343599 BRD4O60885 1362 aaPredicted RBP11.43□□□□□ -0.58
ZNF540-202ENST00000343599 ADGRL3Q9HAR2 1447 aa11.42□□□□□ -0.58
ZNF540-202ENST00000343599 MYOM2P54296 1465 aa11.42□□□□□ -0.58
ZNF540-202ENST00000343599 PLCH1Q4KWH8 1693 aa11.42□□□□□ -0.58
ZNF540-202ENST00000343599 TRPM1Q7Z4N2 1603 aa11.42□□□□□ -0.58
ZNF540-202ENST00000343599 KIF15Q9NS87 1388 aa11.42□□□□□ -0.58
ZNF540-202ENST00000343599 WNK3Q9BYP7 1800 aa11.41□□□□□ -0.58
ZNF540-202ENST00000343599 STAC3Q96MF2 364 aa11.4□□□□□ -0.58
ZNF540-202ENST00000343599 TSPY4P0CV99 314 aa11.39□□□□□ -0.59
ZNF540-202ENST00000343599 TSPY10P0CW01 314 aa11.39□□□□□ -0.59
ZNF540-202ENST00000343599 MSH6P52701 1360 aa11.39□□□□□ -0.59
ZNF540-202ENST00000343599 TRPM3Q9HCF6 1732 aaPredicted RBP11.39□□□□□ -0.59
ZNF540-202ENST00000343599 ZNF335Q9H4Z2 1342 aaPredicted RBP11.38□□□□□ -0.59
ZNF540-202ENST00000343599 HSPA2P54652 639 aa11.38□□□□□ -0.59
ZNF540-202ENST00000343599 THSD7AQ9UPZ6 1657 aa11.38□□□□□ -0.59
ZNF540-202ENST00000343599 COL14A1Q05707 1796 aaKnown RBP11.38□□□□□ -0.59
ZNF540-202ENST00000343599 NCKAP5LQ9HCH0 1330 aa11.38□□□□□ -0.59
ZNF540-202ENST00000343599 EID1Q9Y6B2 187 aa11.38□□□□□ -0.59
ZNF540-202ENST00000343599 TOPAZ1Q8N9V7 1692 aa11.37□□□□□ -0.59
ZNF540-202ENST00000343599 RIMS2Q9UQ26 1411 aa11.37□□□□□ -0.59
ZNF540-202ENST00000343599 PPARGC1BQ86YN6 1023 aaKnown RBP11.37□□□□□ -0.59
ZNF540-202ENST00000343599 ATRNO75882 1429 aa11.37□□□□□ -0.59
ZNF540-202ENST00000343599 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.37□□□□□ -0.59
ZNF540-202ENST00000343599 HNRNPUL2Q1KMD3 747 aaKnown RBP11.37□□□□□ -0.59
ZNF540-202ENST00000343599 ZNF772Q68DY9 489 aaPredicted RBP11.37□□□□□ -0.59
ZNF540-202ENST00000343599 ALS2Q96Q42 1657 aa11.37□□□□□ -0.59
ZNF540-202ENST00000343599 CLTCL1P53675 1640 aa11.37□□□□□ -0.59
ZNF540-202ENST00000343599 TIMELESSQ9UNS1 1208 aa11.36□□□□□ -0.59
ZNF540-202ENST00000343599 RRBP1Q9P2E9 1410 aaKnown RBP11.36□□□□□ -0.59
ZNF540-202ENST00000343599 WASHC2CQ9Y4E1 1318 aa11.36□□□□□ -0.59
ZNF540-202ENST00000343599 ILDR2Q71H61 639 aa11.35□□□□□ -0.59
ZNF540-202ENST00000343599 ANKARQ7Z5J8 1434 aa11.35□□□□□ -0.59
ZNF540-202ENST00000343599 UBAP1LF5GYI3 381 aa11.34□□□□□ -0.59
ZNF540-202ENST00000343599 LRP6O75581 1613 aa11.34□□□□□ -0.59
ZNF540-202ENST00000343599 C11orf95C9JLR9 678 aaPredicted RBP11.34□□□□□ -0.59
ZNF540-202ENST00000343599 EIF3AQ14152 1382 aaKnown RBP11.33□□□□□ -0.6
ZNF540-202ENST00000343599 TNS1Q9HBL0 1735 aaKnown RBP11.32□□□□□ -0.6
ZNF540-202ENST00000343599 ANKRD50Q9ULJ7 1429 aa11.32□□□□□ -0.6
ZNF540-202ENST00000343599 RALGAPBQ86X10 1494 aa11.32□□□□□ -0.6
ZNF540-202ENST00000343599 ADRA2BP18089 450 aa11.32□□□□□ -0.6
ZNF540-202ENST00000343599 PARD3Q8TEW0 1356 aa11.32□□□□□ -0.6
ZNF540-202ENST00000343599 USP32Q8NFA0 1604 aa11.31□□□□□ -0.6
ZNF540-202ENST00000343599 CCDC144AA2RUR9 1427 aa11.31□□□□□ -0.6
ZNF540-202ENST00000343599 BCL9O00512 1426 aa11.3□□□□□ -0.6
ZNF540-202ENST00000343599 HNRNPMP52272 730 aaKnown RBP eCLIP11.3□□□□□ -0.6
ZNF540-202ENST00000343599 P3H3Q8IVL6 736 aa11.3□□□□□ -0.6
ZNF540-202ENST00000343599 PXDNQ92626 1479 aa11.3□□□□□ -0.6
ZNF540-202ENST00000343599 PARP4Q9UKK3 1724 aaKnown RBP11.3□□□□□ -0.6
ZNF540-202ENST00000343599 QRICH2Q9H0J4 1663 aa11.3□□□□□ -0.6
ZNF540-202ENST00000343599 PHRF1Q9P1Y6 1649 aaKnown RBP11.29□□□□□ -0.6
ZNF540-202ENST00000343599 LRPPRCP42704 1394 aaKnown RBP11.29□□□□□ -0.6
ZNF540-202ENST00000343599 HSPA1LP34931 641 aa11.28□□□□□ -0.6
ZNF540-202ENST00000343599 CEBPAP49715 358 aaPredicted RBP11.28□□□□□ -0.6
ZNF540-202ENST00000343599 CADPS2Q86UW7 1296 aa11.28□□□□□ -0.6
ZNF540-202ENST00000343599 SLC4A1APQ9BWU0 796 aaKnown RBP11.28□□□□□ -0.6
ZNF540-202ENST00000343599 ATP7BP35670 1465 aa11.27□□□□□ -0.61
ZNF540-202ENST00000343599 FAM208AQ9UK61 1670 aaKnown RBP11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms