RNA–Protein interactions for RNA: ENST00000342245.8

SMPD1-201, Transcript of sphingomyelin phosphodiesterase 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SMPD1, Length 2,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD1-201ENST00000342245 NCLP19338 710 aaKnown RBP23.44■■□□□ 1.34
SMPD1-201ENST00000342245 ANP32BQ92688 251 aaKnown RBP23.43■■□□□ 1.34
SMPD1-201ENST00000342245 KIAA0586Q9BVV6 1533 aa23.43■■□□□ 1.34
SMPD1-201ENST00000342245 IGHDP01880 384 aa23.43■■□□□ 1.34
SMPD1-201ENST00000342245 PDE4CQ08493 712 aa23.43■■□□□ 1.34
SMPD1-201ENST00000342245 SLFN5Q08AF3 891 aa23.43■■□□□ 1.34
SMPD1-201ENST00000342245 NKTRP30414 1462 aaKnown RBP23.42■■□□□ 1.34
SMPD1-201ENST00000342245 KIAA0556O60303 1618 aa23.42■■□□□ 1.34
SMPD1-201ENST00000342245 MSNP26038 577 aaKnown RBP23.42■■□□□ 1.34
SMPD1-201ENST00000342245 UTP14CQ5TAP6 766 aaKnown RBP23.42■■□□□ 1.34
SMPD1-201ENST00000342245 TRMT2AQ8IZ69 625 aaKnown RBP23.42■■□□□ 1.34
SMPD1-201ENST00000342245 PLEKHH1Q9ULM0 1364 aa23.42■■□□□ 1.34
SMPD1-201ENST00000342245 ZNF644Q9H582 1327 aaPredicted RBP23.41■■□□□ 1.34
SMPD1-201ENST00000342245 HS1BP3Q53T59 392 aa23.41■■□□□ 1.34
SMPD1-201ENST00000342245 PMFBP1Q8TBY8 1022 aa23.4■■□□□ 1.34
SMPD1-201ENST00000342245 CLUAP1Q96AJ1 413 aa23.39■■□□□ 1.34
SMPD1-201ENST00000342245 ADAMTS8Q9UP79 889 aa23.39■■□□□ 1.33
SMPD1-201ENST00000342245 NUP153P49790 1475 aaKnown RBP23.39■■□□□ 1.33
SMPD1-201ENST00000342245 WDR43Q15061 677 aaKnown RBP eCLIP23.38■■□□□ 1.33
SMPD1-201ENST00000342245 GRIN2AQ12879 1464 aa23.37■■□□□ 1.33
SMPD1-201ENST00000342245 PKD2Q13563 968 aa23.37■■□□□ 1.33
SMPD1-201ENST00000342245 GBP4Q96PP9 640 aa23.37■■□□□ 1.33
SMPD1-201ENST00000342245 COL17A1Q9UMD9 1497 aaPredicted RBP23.37■■□□□ 1.33
SMPD1-201ENST00000342245 CIZ1Q9ULV3 898 aaPredicted RBP23.37■■□□□ 1.33
SMPD1-201ENST00000342245 EIF4G3O43432 1585 aaKnown RBP23.36■■□□□ 1.33
SMPD1-201ENST00000342245 CEP170Q5SW79 1584 aa23.35■■□□□ 1.33
SMPD1-201ENST00000342245 ADGRL2O95490 1459 aa23.35■■□□□ 1.33
SMPD1-201ENST00000342245 LAMC1P11047 1609 aa23.34■■□□□ 1.33
SMPD1-201ENST00000342245 NGEFQ8N5V2 710 aa23.34■■□□□ 1.33
SMPD1-201ENST00000342245 NCOA3Q9Y6Q9 1424 aa23.34■■□□□ 1.33
SMPD1-201ENST00000342245 IBTKQ9P2D0 1353 aaPredicted RBP23.34■■□□□ 1.33
SMPD1-201ENST00000342245 CAMSAP2Q08AD1 1489 aa23.34■■□□□ 1.33
SMPD1-201ENST00000342245 DYNC1I1O14576 645 aa23.34■■□□□ 1.33
SMPD1-201ENST00000342245 CC2D1BQ5T0F9 858 aaKnown RBP23.34■■□□□ 1.33
SMPD1-201ENST00000342245 HSCBQ8IWL3 235 aa23.34■■□□□ 1.33
SMPD1-201ENST00000342245 RAPGEF6Q8TEU7 1601 aa23.33■■□□□ 1.32
SMPD1-201ENST00000342245 PLXNC1O60486 1568 aa23.32■■□□□ 1.32
SMPD1-201ENST00000342245 FAM13BQ9NYF5 915 aa23.32■■□□□ 1.32
SMPD1-201ENST00000342245 TRPM1Q7Z4N2 1603 aa23.31■■□□□ 1.32
SMPD1-201ENST00000342245 CSPP1Q1MSJ5 1256 aa23.31■■□□□ 1.32
SMPD1-201ENST00000342245 ZNF692Q9BU19 519 aaPredicted RBP23.31■■□□□ 1.32
SMPD1-201ENST00000342245 E9PSI1 815 aa23.3■■□□□ 1.32
SMPD1-201ENST00000342245 DMTNQ08495 405 aa23.3■■□□□ 1.32
SMPD1-201ENST00000342245 ZNF500O60304 480 aaPredicted RBP23.3■■□□□ 1.32
SMPD1-201ENST00000342245 NASPP49321 788 aaPredicted RBP23.3■■□□□ 1.32
SMPD1-201ENST00000342245 GAS2L3Q86XJ1 694 aa23.3■■□□□ 1.32
SMPD1-201ENST00000342245 C22orf23Q9BZE7 217 aa23.3■■□□□ 1.32
SMPD1-201ENST00000342245 PRG4Q92954 1404 aaPredicted RBP23.29■■□□□ 1.32
SMPD1-201ENST00000342245 DDIT3P35638 169 aa23.28■■□□□ 1.32
SMPD1-201ENST00000342245 FBLN2P98095 1184 aa23.28■■□□□ 1.32
SMPD1-201ENST00000342245 CHMP7Q8WUX9 453 aaPredicted RBP23.28■■□□□ 1.32
SMPD1-201ENST00000342245 SPRYD3Q8NCJ5 442 aa23.28■■□□□ 1.32
SMPD1-201ENST00000342245 ERCC6Q03468 1493 aa23.27■■□□□ 1.32
SMPD1-201ENST00000342245 RTEL1-TNFRSF6BF6WH68 1400 aa23.27■■□□□ 1.32
SMPD1-201ENST00000342245 ABCC2Q92887 1545 aa23.26■■□□□ 1.31
SMPD1-201ENST00000342245 TNNT2P45379 298 aaPredicted RBP23.25■■□□□ 1.31
SMPD1-201ENST00000342245 PANK3Q9H999 370 aa23.25■■□□□ 1.31
SMPD1-201ENST00000342245 GPRASP1Q5JY77 1395 aa23.25■■□□□ 1.31
SMPD1-201ENST00000342245 PLB1Q6P1J6 1458 aa23.25■■□□□ 1.31
SMPD1-201ENST00000342245 KDM5DQ9BY66 1539 aa23.25■■□□□ 1.31
SMPD1-201ENST00000342245 MCM5P33992 734 aa23.25■■□□□ 1.31
SMPD1-201ENST00000342245 R3HCC1Q9Y3T6 440 aaKnown RBP23.25■■□□□ 1.31
SMPD1-201ENST00000342245 BCAR3O75815 825 aa23.24■■□□□ 1.31
SMPD1-201ENST00000342245 SNX21Q969T3 373 aa23.24■■□□□ 1.31
SMPD1-201ENST00000342245 UQCRHLA0A096LP55 91 aa23.24■■□□□ 1.31
SMPD1-201ENST00000342245 UQCRHP07919 91 aa23.24■■□□□ 1.31
SMPD1-201ENST00000342245 NOL7Q9UMY1 257 aaKnown RBP23.24■■□□□ 1.31
SMPD1-201ENST00000342245 CROCC2H7BZ55 1655 aa23.23■■□□□ 1.31
SMPD1-201ENST00000342245 SMC5Q8IY18 1101 aa23.23■■□□□ 1.31
SMPD1-201ENST00000342245 TNPO1Q92973 898 aaKnown RBP23.22■■□□□ 1.31
SMPD1-201ENST00000342245 RWDD1Q9H446 243 aaPredicted RBP23.22■■□□□ 1.31
SMPD1-201ENST00000342245 CANXP27824 592 aaKnown RBP23.21■■□□□ 1.31
SMPD1-201ENST00000342245 RAB3GAP1Q15042 981 aa23.21■■□□□ 1.31
SMPD1-201ENST00000342245 PIK3C2GO75747 1445 aa23.21■■□□□ 1.31
SMPD1-201ENST00000342245 TROQ12816 1431 aaPredicted RBP23.21■■□□□ 1.31
SMPD1-201ENST00000342245 GOLGA6L22H0YM25 854 aa23.21■■□□□ 1.31
SMPD1-201ENST00000342245 PRAG1Q86YV5 1406 aa23.21■■□□□ 1.31
SMPD1-201ENST00000342245 CCDC94Q9BW85 323 aaPredicted RBP23.21■■□□□ 1.31
SMPD1-201ENST00000342245 CFDP1Q9UEE9 299 aaPredicted RBP23.21■■□□□ 1.31
SMPD1-201ENST00000342245 ZNF777Q9ULD5 760 aaPredicted RBP23.21■■□□□ 1.31
SMPD1-201ENST00000342245 PDZRN3Q9UPQ7 1066 aa23.21■■□□□ 1.31
SMPD1-201ENST00000342245 PRDM15P57071 1507 aaPredicted RBP23.21■■□□□ 1.31
SMPD1-201ENST00000342245 KDM2AQ9Y2K7 1162 aa23.2■■□□□ 1.3
SMPD1-201ENST00000342245 MAGI1Q96QZ7 1491 aaPredicted RBP23.2■■□□□ 1.3
SMPD1-201ENST00000342245 PPP2R1AP30153 589 aa23.2■■□□□ 1.3
SMPD1-201ENST00000342245 ERBINQ96RT1 1412 aa23.19■■□□□ 1.3
SMPD1-201ENST00000342245 SYNJ2O15056 1496 aa23.19■■□□□ 1.3
SMPD1-201ENST00000342245 ITSN2Q9NZM3 1697 aa23.19■■□□□ 1.3
SMPD1-201ENST00000342245 GTPBP4Q9BZE4 634 aaKnown RBP23.18■■□□□ 1.3
SMPD1-201ENST00000342245 ZHX1Q9UKY1 873 aaPredicted RBP23.18■■□□□ 1.3
SMPD1-201ENST00000342245 TMF1P82094 1093 aa23.18■■□□□ 1.3
SMPD1-201ENST00000342245 SASS6Q6UVJ0 657 aa23.17■■□□□ 1.3
SMPD1-201ENST00000342245 KIF20AO95235 890 aa23.17■■□□□ 1.3
SMPD1-201ENST00000342245 COG6Q9Y2V7 657 aa23.17■■□□□ 1.3
SMPD1-201ENST00000342245 ANKRD50Q9ULJ7 1429 aa23.17■■□□□ 1.3
SMPD1-201ENST00000342245 JPH4Q96JJ6 628 aa23.16■■□□□ 1.3
SMPD1-201ENST00000342245 BBXQ8WY36 941 aaPredicted RBP23.16■■□□□ 1.3
SMPD1-201ENST00000342245 GPATCH8Q9UKJ3 1502 aaKnown RBP23.15■■□□□ 1.3
SMPD1-201ENST00000342245 DISP3Q9P2K9 1392 aa23.15■■□□□ 1.3
SMPD1-201ENST00000342245 KLHL40Q2TBA0 621 aa23.15■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms