RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 NAIPQ13075 1403 aa13.06□□□□□ -0.32
USP54-201ENST00000339859 CNTLNQ9NXG0 1405 aa13.06□□□□□ -0.32
USP54-201ENST00000339859 SAMD9Q5K651 1589 aa13.06□□□□□ -0.32
USP54-201ENST00000339859 RTEL1-TNFRSF6BF6WH68 1400 aa13.06□□□□□ -0.32
USP54-201ENST00000339859 HSP90AA1P07900 732 aaKnown RBP13.05□□□□□ -0.32
USP54-201ENST00000339859 STK31Q9BXU1 1019 aa13.05□□□□□ -0.32
USP54-201ENST00000339859 NCOA1Q15788 1441 aa13.05□□□□□ -0.32
USP54-201ENST00000339859 ANP32AP39687 249 aaKnown RBP13.05□□□□□ -0.32
USP54-201ENST00000339859 MYBBP1AQ9BQG0 1328 aaKnown RBP13.05□□□□□ -0.32
USP54-201ENST00000339859 IPO8O15397 1037 aaKnown RBP13.05□□□□□ -0.32
USP54-201ENST00000339859 SENP3-EIF4A1A0A087X0R7 540 aa13.04□□□□□ -0.32
USP54-201ENST00000339859 NEO1Q92859 1461 aa13.04□□□□□ -0.32
USP54-201ENST00000339859 SMG6Q86US8 1419 aaKnown RBP13.04□□□□□ -0.32
USP54-201ENST00000339859 ABTB2Q8N961 1025 aa13.04□□□□□ -0.32
USP54-201ENST00000339859 ZNF692Q9BU19 519 aaPredicted RBP13.04□□□□□ -0.32
USP54-201ENST00000339859 FBXO31Q5XUX0 539 aaPredicted RBP13.03□□□□□ -0.32
USP54-201ENST00000339859 NLRP6P59044 892 aa13.03□□□□□ -0.32
USP54-201ENST00000339859 CDK19Q9BWU1 502 aa13.03□□□□□ -0.32
USP54-201ENST00000339859 ATP10AO60312 1499 aa13.03□□□□□ -0.32
USP54-201ENST00000339859 DIAPH1O60610 1272 aaKnown RBP13.02□□□□□ -0.33
USP54-201ENST00000339859 HDAC5Q9UQL6 1122 aa13.02□□□□□ -0.33
USP54-201ENST00000339859 RAPGEF4Q8WZA2 1011 aa13.01□□□□□ -0.33
USP54-201ENST00000339859 TRAPPC8Q9Y2L5 1435 aa13.01□□□□□ -0.33
USP54-201ENST00000339859 TTC5Q8N0Z6 440 aa13.01□□□□□ -0.33
USP54-201ENST00000339859 SHANK2Q9UPX8 1470 aa13□□□□□ -0.33
USP54-201ENST00000339859 ZFYVE16Q7Z3T8 1539 aa12.99□□□□□ -0.33
USP54-201ENST00000339859 PMFBP1Q8TBY8 1022 aa12.99□□□□□ -0.33
USP54-201ENST00000339859 NUTM2BA6NNL0 878 aaPredicted RBP12.99□□□□□ -0.33
USP54-201ENST00000339859 NUTM2EB1AL46 878 aaPredicted RBP12.99□□□□□ -0.33
USP54-201ENST00000339859 TEFQ10587 303 aa12.99□□□□□ -0.33
USP54-201ENST00000339859 NUTM2AQ8IVF1 878 aaPredicted RBP12.99□□□□□ -0.33
USP54-201ENST00000339859 ATAD2Q6PL18 1390 aa12.99□□□□□ -0.33
USP54-201ENST00000339859 NUTM2GQ5VZR2 741 aa12.99□□□□□ -0.33
USP54-201ENST00000339859 LRPPRCP42704 1394 aaKnown RBP12.99□□□□□ -0.33
USP54-201ENST00000339859 NLRP2Q9NX02 1062 aa12.98□□□□□ -0.33
USP54-201ENST00000339859 TCOF1Q13428 1488 aaKnown RBP12.98□□□□□ -0.33
USP54-201ENST00000339859 MYO5CQ9NQX4 1742 aa12.97□□□□□ -0.33
USP54-201ENST00000339859 ABCA8O94911 1581 aa12.97□□□□□ -0.33
USP54-201ENST00000339859 IDI1Q13907 227 aa12.97□□□□□ -0.33
USP54-201ENST00000339859 MSH5O43196 834 aa12.96□□□□□ -0.33
USP54-201ENST00000339859 CCDC146Q8IYE0 955 aa12.96□□□□□ -0.33
USP54-201ENST00000339859 ATP7AQ04656 1500 aa12.96□□□□□ -0.33
USP54-201ENST00000339859 SYTL4Q96C24 671 aaPredicted RBP12.96□□□□□ -0.33
USP54-201ENST00000339859 SF3B2Q13435 895 aaKnown RBP12.96□□□□□ -0.34
USP54-201ENST00000339859 ZCCHC11Q5TAX3 1644 aaKnown RBP12.95□□□□□ -0.34
USP54-201ENST00000339859 UHRF1BP1Q6BDS2 1440 aa12.95□□□□□ -0.34
USP54-201ENST00000339859 AMOTL2Q9Y2J4 779 aa12.95□□□□□ -0.34
USP54-201ENST00000339859 IRX6P78412 446 aaPredicted RBP12.95□□□□□ -0.34
USP54-201ENST00000339859 GTF2E1P29083 439 aaPredicted RBP12.94□□□□□ -0.34
USP54-201ENST00000339859 DNAJC5Q9H3Z4 198 aa12.94□□□□□ -0.34
USP54-201ENST00000339859 MSH6P52701 1360 aa12.94□□□□□ -0.34
USP54-201ENST00000339859 GGNBP2Q9H3C7 697 aa12.93□□□□□ -0.34
USP54-201ENST00000339859 TAF7LQ5H9L4 462 aa12.93□□□□□ -0.34
USP54-201ENST00000339859 CCDC7Q96M83 1385 aa12.93□□□□□ -0.34
USP54-201ENST00000339859 STRN4Q9NRL3 753 aa12.92□□□□□ -0.34
USP54-201ENST00000339859 NOS1P29475 1434 aa12.92□□□□□ -0.34
USP54-201ENST00000339859 ZMYM3Q14202 1370 aa12.92□□□□□ -0.34
USP54-201ENST00000339859 G3V3G9 751 aa12.92□□□□□ -0.34
USP54-201ENST00000339859 NBPF1Q3BBV0 1214 aa12.92□□□□□ -0.34
USP54-201ENST00000339859 DCAF8Q5TAQ9 597 aa12.92□□□□□ -0.34
USP54-201ENST00000339859 CABP1Q9NZU7 370 aa12.92□□□□□ -0.34
USP54-201ENST00000339859 RIMS2Q9UQ26 1411 aa12.91□□□□□ -0.34
USP54-201ENST00000339859 TOM1O60784 492 aa12.91□□□□□ -0.34
USP54-201ENST00000339859 NUDT16Q96DE0 195 aaKnown RBP12.91□□□□□ -0.34
USP54-201ENST00000339859 HMGB2P26583 209 aaKnown RBP12.9□□□□□ -0.34
USP54-201ENST00000339859 MAPKBP1O60336 1514 aa12.9□□□□□ -0.34
USP54-201ENST00000339859 DNMT1P26358 1616 aaKnown RBP12.9□□□□□ -0.34
USP54-201ENST00000339859 TATP17735 454 aaPredicted RBP12.9□□□□□ -0.34
USP54-201ENST00000339859 PLEKHO1Q53GL0 409 aaPredicted RBP12.9□□□□□ -0.34
USP54-201ENST00000339859 KIF7Q2M1P5 1343 aa12.9□□□□□ -0.34
USP54-201ENST00000339859 SMC4Q9NTJ3 1288 aa12.9□□□□□ -0.34
USP54-201ENST00000339859 KCNH5Q8NCM2 988 aa12.9□□□□□ -0.35
USP54-201ENST00000339859 TSPOAP1O95153 1857 aa12.89□□□□□ -0.35
USP54-201ENST00000339859 PDE3BQ13370 1112 aa12.89□□□□□ -0.35
USP54-201ENST00000339859 CHMP3Q9Y3E7 222 aa12.89□□□□□ -0.35
USP54-201ENST00000339859 TOM1L2Q6ZVM7 507 aa12.89□□□□□ -0.35
USP54-201ENST00000339859 CADPS2Q86UW7 1296 aa12.89□□□□□ -0.35
USP54-201ENST00000339859 NGEFQ8N5V2 710 aa12.89□□□□□ -0.35
USP54-201ENST00000339859 PRDM11Q9NQV5 511 aa12.89□□□□□ -0.35
USP54-201ENST00000339859 SUPT16HQ9Y5B9 1047 aaKnown RBP12.89□□□□□ -0.35
USP54-201ENST00000339859 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.88□□□□□ -0.35
USP54-201ENST00000339859 ITPRIPQ8IWB1 547 aa12.88□□□□□ -0.35
USP54-201ENST00000339859 CCDC61Q9Y6R9 512 aa12.87□□□□□ -0.35
USP54-201ENST00000339859 DCAF8L1A6NGE4 600 aa12.87□□□□□ -0.35
USP54-201ENST00000339859 GAS2L2Q8NHY3 880 aa12.87□□□□□ -0.35
USP54-201ENST00000339859 CFAP44Q96MT7 982 aa12.87□□□□□ -0.35
USP54-201ENST00000339859 PHF8Q9UPP1 1060 aa12.86□□□□□ -0.35
USP54-201ENST00000339859 WAPLQ7Z5K2 1190 aa12.86□□□□□ -0.35
USP54-201ENST00000339859 RUNDC1Q96C34 613 aa12.86□□□□□ -0.35
USP54-201ENST00000339859 SPG7Q9UQ90 795 aa12.86□□□□□ -0.35
USP54-201ENST00000339859 RRP7AQ9Y3A4 280 aaKnown RBP12.86□□□□□ -0.35
USP54-201ENST00000339859 WASHC2AQ641Q2 1341 aa12.86□□□□□ -0.35
USP54-201ENST00000339859 USP35Q9P2H5 1018 aa12.86□□□□□ -0.35
USP54-201ENST00000339859 MAST1Q9Y2H9 1570 aa12.85□□□□□ -0.35
USP54-201ENST00000339859 HMMRO75330 724 aa12.85□□□□□ -0.35
USP54-201ENST00000339859 ADGRF5Q8IZF2 1346 aa12.85□□□□□ -0.35
USP54-201ENST00000339859 GPATCH3Q96I76 525 aa12.85□□□□□ -0.35
USP54-201ENST00000339859 C14orf93Q9H972 538 aaKnown RBP12.85□□□□□ -0.35
USP54-201ENST00000339859 UBAP1LF5GYI3 381 aa12.84□□□□□ -0.35
USP54-201ENST00000339859 RIPK4P57078 832 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms