RNA–Protein interactions for RNA: ENST00000339307.8

ITGA4-202, Transcript of integrin subunit alpha 4, humanhuman

TSL 1 (best) BASIC

Gene ITGA4, Length 1,403 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ITGA4-202ENST00000339307 SOCS7O14512 581 aa29.63■■■□□ 2.33
ITGA4-202ENST00000339307 KCNA6P17658 529 aa29.63■■■□□ 2.33
ITGA4-202ENST00000339307 PROSER2Q86WR7 435 aaPredicted RBP29.62■■■□□ 2.33
ITGA4-202ENST00000339307 RBM33Q96EV2 1170 aaKnown RBP29.62■■■□□ 2.33
ITGA4-202ENST00000339307 TMEM94Q12767 1356 aa29.59■■■□□ 2.33
ITGA4-202ENST00000339307 MYO5BQ9ULV0 1848 aa29.59■■■□□ 2.33
ITGA4-202ENST00000339307 RIMS2Q9UQ26 1411 aa29.58■■■□□ 2.33
ITGA4-202ENST00000339307 NUTM2DQ5VT03 806 aaPredicted RBP29.58■■■□□ 2.33
ITGA4-202ENST00000339307 E9PCH4 1651 aa29.57■■■□□ 2.32
ITGA4-202ENST00000339307 XIRP1Q702N8 1843 aaKnown RBP29.56■■■□□ 2.32
ITGA4-202ENST00000339307 IQGAP3Q86VI3 1631 aa29.56■■■□□ 2.32
ITGA4-202ENST00000339307 MED1Q15648 1581 aaPredicted RBP29.55■■■□□ 2.32
ITGA4-202ENST00000339307 PHF23Q9BUL5 403 aaPredicted RBP29.54■■■□□ 2.32
ITGA4-202ENST00000339307 TMEM131LA2VDJ0 1609 aa29.54■■■□□ 2.32
ITGA4-202ENST00000339307 ZFYVE9O95405 1425 aa29.53■■■□□ 2.32
ITGA4-202ENST00000339307 ABCF1Q8NE71 845 aaKnown RBP eCLIP29.53■■■□□ 2.32
ITGA4-202ENST00000339307 PLEKHG1Q9ULL1 1385 aa29.52■■■□□ 2.32
ITGA4-202ENST00000339307 NKTRP30414 1462 aaKnown RBP29.45■■■□□ 2.31
ITGA4-202ENST00000339307 TBX22Q9Y458 520 aa29.44■■■□□ 2.3
ITGA4-202ENST00000339307 MSH6P52701 1360 aa29.44■■■□□ 2.3
ITGA4-202ENST00000339307 NWD1Q149M9 1564 aa29.43■■■□□ 2.3
ITGA4-202ENST00000339307 C14orf37Q86TY3 774 aa29.43■■■□□ 2.3
ITGA4-202ENST00000339307 ZNF326Q5BKZ1 582 aaKnown RBP29.42■■■□□ 2.3
ITGA4-202ENST00000339307 FAM135BQ49AJ0 1406 aa29.4■■■□□ 2.3
ITGA4-202ENST00000339307 RRBP1Q9P2E9 1410 aaKnown RBP29.4■■■□□ 2.3
ITGA4-202ENST00000339307 CHD2O14647 1828 aaKnown RBP29.39■■■□□ 2.29
ITGA4-202ENST00000339307 TRIM52Q96A61 297 aa29.37■■■□□ 2.29
ITGA4-202ENST00000339307 SLAIN2Q9P270 581 aa29.36■■■□□ 2.29
ITGA4-202ENST00000339307 ROBO1Q9Y6N7 1651 aa29.35■■■□□ 2.29
ITGA4-202ENST00000339307 SPHKAPQ2M3C7 1700 aa29.34■■■□□ 2.29
ITGA4-202ENST00000339307 ADAMTS13Q76LX8 1427 aa29.34■■■□□ 2.29
ITGA4-202ENST00000339307 NAIPQ13075 1403 aa29.32■■■□□ 2.28
ITGA4-202ENST00000339307 AMOTL2Q9Y2J4 779 aa29.3■■■□□ 2.28
ITGA4-202ENST00000339307 DIP2AQ14689 1571 aa29.3■■■□□ 2.28
ITGA4-202ENST00000339307 TRPM2O94759 1503 aa29.27■■■□□ 2.28
ITGA4-202ENST00000339307 PIK3R4Q99570 1358 aa29.27■■■□□ 2.28
ITGA4-202ENST00000339307 ATF3P18847 181 aa29.26■■■□□ 2.27
ITGA4-202ENST00000339307 C19orf44Q9H6X5 657 aa29.23■■■□□ 2.27
ITGA4-202ENST00000339307 NCOA3Q9Y6Q9 1424 aa29.23■■■□□ 2.27
ITGA4-202ENST00000339307 CADPS2Q86UW7 1296 aa29.22■■■□□ 2.27
ITGA4-202ENST00000339307 SLC4A1APQ9BWU0 796 aaKnown RBP29.21■■■□□ 2.27
ITGA4-202ENST00000339307 CLTCL1P53675 1640 aa29.21■■■□□ 2.27
ITGA4-202ENST00000339307 PTPRUQ92729 1446 aa29.2■■■□□ 2.27
ITGA4-202ENST00000339307 PHLPP1O60346 1717 aa29.2■■■□□ 2.26
ITGA4-202ENST00000339307 HFM1A2PYH4 1435 aa29.2■■■□□ 2.26
ITGA4-202ENST00000339307 SIPA1L2Q9P2F8 1722 aaPredicted RBP29.16■■■□□ 2.26
ITGA4-202ENST00000339307 KIF1BO60333 1816 aa29.16■■■□□ 2.26
ITGA4-202ENST00000339307 SETBP1Q9Y6X0 1596 aa29.15■■■□□ 2.26
ITGA4-202ENST00000339307 RGS17Q9UGC6 210 aaPredicted RBP29.15■■■□□ 2.26
ITGA4-202ENST00000339307 NRXN3Q9Y4C0 1643 aa29.15■■■□□ 2.26
ITGA4-202ENST00000339307 METP08581 1390 aa29.15■■■□□ 2.26
ITGA4-202ENST00000339307 JCADQ9P266 1359 aa29.12■■■□□ 2.25
ITGA4-202ENST00000339307 NEXMIFQ5QGS0 1516 aa29.11■■■□□ 2.25
ITGA4-202ENST00000339307 FOXD1Q16676 465 aa29.1■■■□□ 2.25
ITGA4-202ENST00000339307 VGFO15240 615 aaPredicted RBP29.09■■■□□ 2.25
ITGA4-202ENST00000339307 XRN1Q8IZH2 1706 aaKnown RBP29.07■■■□□ 2.24
ITGA4-202ENST00000339307 BRINP3Q76B58 766 aa29.04■■■□□ 2.24
ITGA4-202ENST00000339307 MEX3CQ5U5Q3 659 aaKnown RBP29.03■■■□□ 2.24
ITGA4-202ENST00000339307 POTEAQ6S8J7 498 aa29.03■■■□□ 2.24
ITGA4-202ENST00000339307 COL16A1Q07092 1604 aaPredicted RBP29.03■■■□□ 2.24
ITGA4-202ENST00000339307 RPGRIP1LQ68CZ1 1315 aa29.01■■■□□ 2.24
ITGA4-202ENST00000339307 DCCP43146 1447 aa29■■■□□ 2.23
ITGA4-202ENST00000339307 AHDC1Q5TGY3 1603 aaPredicted RBP28.97■■■□□ 2.23
ITGA4-202ENST00000339307 SPATA31A6Q5VVP1 1343 aa28.97■■■□□ 2.23
ITGA4-202ENST00000339307 RGL3Q3MIN7 710 aa28.97■■■□□ 2.23
ITGA4-202ENST00000339307 MPHOSPH9Q99550 1183 aa28.97■■■□□ 2.23
ITGA4-202ENST00000339307 MST1RQ04912 1400 aa28.96■■■□□ 2.23
ITGA4-202ENST00000339307 NUTM2BA6NNL0 878 aaPredicted RBP28.95■■■□□ 2.23
ITGA4-202ENST00000339307 NUTM2EB1AL46 878 aaPredicted RBP28.95■■■□□ 2.23
ITGA4-202ENST00000339307 NUTM2AQ8IVF1 878 aaPredicted RBP28.95■■■□□ 2.23
ITGA4-202ENST00000339307 CCDC144AA2RUR9 1427 aa28.95■■■□□ 2.22
ITGA4-202ENST00000339307 ADGRL3Q9HAR2 1447 aa28.95■■■□□ 2.22
ITGA4-202ENST00000339307 ASXL1Q8IXJ9 1541 aa28.93■■■□□ 2.22
ITGA4-202ENST00000339307 DDX17Q92841 729 aaKnown RBP28.91■■■□□ 2.22
ITGA4-202ENST00000339307 PPLO60437 1756 aa28.9■■■□□ 2.22
ITGA4-202ENST00000339307 NALCNQ8IZF0 1738 aa28.9■■■□□ 2.22
ITGA4-202ENST00000339307 ROBO2Q9HCK4 1378 aa28.9■■■□□ 2.22
ITGA4-202ENST00000339307 LRP6O75581 1613 aa28.9■■■□□ 2.22
ITGA4-202ENST00000339307 LRRC59Q96AG4 307 aaKnown RBP28.87■■■□□ 2.21
ITGA4-202ENST00000339307 SHPRHQ149N8 1683 aa28.87■■■□□ 2.21
ITGA4-202ENST00000339307 ADGRF5Q8IZF2 1346 aa28.87■■■□□ 2.21
ITGA4-202ENST00000339307 SETD1AO15047 1707 aaKnown RBP28.86■■■□□ 2.21
ITGA4-202ENST00000339307 PTCH1Q13635 1447 aa28.86■■■□□ 2.21
ITGA4-202ENST00000339307 ZNF772Q68DY9 489 aaPredicted RBP28.85■■■□□ 2.21
ITGA4-202ENST00000339307 STK26Q9P289 416 aa28.85■■■□□ 2.21
ITGA4-202ENST00000339307 C1orf167Q5SNV9 1468 aa28.82■■■□□ 2.2
ITGA4-202ENST00000339307 SETD5Q9C0A6 1442 aa28.81■■■□□ 2.2
ITGA4-202ENST00000339307 NHSL1Q5SYE7 1610 aa28.81■■■□□ 2.2
ITGA4-202ENST00000339307 ORAI2Q96SN7 254 aa28.81■■■□□ 2.2
ITGA4-202ENST00000339307 ANKRD30BQ9BXX2 1392 aa28.79■■■□□ 2.2
ITGA4-202ENST00000339307 SPATA31E1Q6ZUB1 1445 aa28.78■■■□□ 2.2
ITGA4-202ENST00000339307 ACIN1Q9UKV3 1341 aaKnown RBP28.77■■■□□ 2.2
ITGA4-202ENST00000339307 TMEM132EQ6IEE7 984 aa28.77■■■□□ 2.2
ITGA4-202ENST00000339307 WAPLQ7Z5K2 1190 aa28.74■■■□□ 2.19
ITGA4-202ENST00000339307 C8orf37Q96NL8 207 aa28.74■■■□□ 2.19
ITGA4-202ENST00000339307 ESCO1Q5FWF5 840 aa28.73■■■□□ 2.19
ITGA4-202ENST00000339307 PNPLA6Q8IY17 1366 aa28.72■■■□□ 2.19
ITGA4-202ENST00000339307 AFF2P51816 1311 aa28.72■■■□□ 2.19
ITGA4-202ENST00000339307 PRAG1Q86YV5 1406 aa28.72■■■□□ 2.19
ITGA4-202ENST00000339307 NUTM2FA1L443 756 aa28.71■■■□□ 2.19
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms