RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 TPM1P09493 284 aa15.48■□□□□ 0.07
SDC3-201ENST00000336798 NFXL1Q6ZNB6 911 aa15.48■□□□□ 0.07
SDC3-201ENST00000336798 COG6Q9Y2V7 657 aa15.47■□□□□ 0.07
SDC3-201ENST00000336798 NEXNQ0ZGT2 675 aa15.46■□□□□ 0.07
SDC3-201ENST00000336798 IFIT2P09913 472 aaKnown RBP15.45■□□□□ 0.06
SDC3-201ENST00000336798 TDRD9Q8NDG6 1382 aaKnown RBP15.45■□□□□ 0.06
SDC3-201ENST00000336798 CPLX1O14810 134 aa15.45■□□□□ 0.06
SDC3-201ENST00000336798 NLRP13Q86W25 1043 aa15.45■□□□□ 0.06
SDC3-201ENST00000336798 CRBNQ96SW2 442 aa15.45■□□□□ 0.06
SDC3-201ENST00000336798 CCDC43Q96MW1 224 aaKnown RBP15.44■□□□□ 0.06
SDC3-201ENST00000336798 DDX11L8A8MPP1 907 aa15.44■□□□□ 0.06
SDC3-201ENST00000336798 ZNF771Q7L3S4 317 aaPredicted RBP15.44■□□□□ 0.06
SDC3-201ENST00000336798 EXOC6Q8TAG9 804 aa15.43■□□□□ 0.06
SDC3-201ENST00000336798 NAP1L1P55209 391 aaKnown RBP15.43■□□□□ 0.06
SDC3-201ENST00000336798 USP35Q9P2H5 1018 aa15.43■□□□□ 0.06
SDC3-201ENST00000336798 BICD2Q8TD16 824 aa15.43■□□□□ 0.06
SDC3-201ENST00000336798 ST20-MTHFSA0A0A6YYL1 179 aa15.43■□□□□ 0.06
SDC3-201ENST00000336798 UTP3Q9NQZ2 479 aaKnown RBP eCLIP15.43■□□□□ 0.061e-8■■■■■ 44.9
SDC3-201ENST00000336798 CCDC70Q6NSX1 233 aa15.42■□□□□ 0.06
SDC3-201ENST00000336798 NUTM2GQ5VZR2 741 aa15.42■□□□□ 0.06
SDC3-201ENST00000336798 AIMP1Q12904 312 aaKnown RBP15.42■□□□□ 0.06
SDC3-201ENST00000336798 PSME1Q06323 249 aa15.42■□□□□ 0.06
SDC3-201ENST00000336798 ZKSCAN2Q63HK3 967 aa15.42■□□□□ 0.06
SDC3-201ENST00000336798 CCDC27Q2M243 656 aa15.41■□□□□ 0.06
SDC3-201ENST00000336798 FAM177BA6PVY3 158 aa15.41■□□□□ 0.06
SDC3-201ENST00000336798 VPS37CA5D8V6 355 aaPredicted RBP15.41■□□□□ 0.06
SDC3-201ENST00000336798 HOMER1Q86YM7 354 aa15.41■□□□□ 0.06
SDC3-201ENST00000336798 CPLX2Q6PUV4 134 aaKnown RBP15.4■□□□□ 0.06
SDC3-201ENST00000336798 RBM33Q96EV2 1170 aaKnown RBP15.39■□□□□ 0.05
SDC3-201ENST00000336798 ZNF428Q96B54 188 aa15.39■□□□□ 0.05
SDC3-201ENST00000336798 NEUROD6Q96NK8 337 aa15.39■□□□□ 0.05
SDC3-201ENST00000336798 TRDNQ13061 729 aa15.39■□□□□ 0.05
SDC3-201ENST00000336798 CCDC47Q96A33 483 aaKnown RBP15.39■□□□□ 0.05
SDC3-201ENST00000336798 ATP6V1DQ9Y5K8 247 aa15.39■□□□□ 0.05
SDC3-201ENST00000336798 ERICH2A1L162 156 aa15.39■□□□□ 0.05
SDC3-201ENST00000336798 FKBP5Q13451 457 aaPredicted RBP15.39■□□□□ 0.05
SDC3-201ENST00000336798 IPO7O95373 1038 aaKnown RBP15.38■□□□□ 0.05
SDC3-201ENST00000336798 ZKSCAN1P17029 563 aaPredicted RBP15.38■□□□□ 0.05
SDC3-201ENST00000336798 PDE4AP27815 886 aa15.38■□□□□ 0.05
SDC3-201ENST00000336798 ABCC8Q09428 1581 aa15.37■□□□□ 0.05
SDC3-201ENST00000336798 FAM161AQ3B820 660 aa15.37■□□□□ 0.05
SDC3-201ENST00000336798 G3BP1Q13283 466 aaKnown RBP eCLIP15.37■□□□□ 0.05
SDC3-201ENST00000336798 CT47A1Q5JQC4 288 aaPredicted RBP15.37■□□□□ 0.05
SDC3-201ENST00000336798 ZFYVE27Q5T4F4 411 aa15.37■□□□□ 0.05
SDC3-201ENST00000336798 RUFY2Q8WXA3 655 aa15.37■□□□□ 0.05
SDC3-201ENST00000336798 APAF1O14727 1248 aa15.37■□□□□ 0.05
SDC3-201ENST00000336798 MYBBP1AQ9BQG0 1328 aaKnown RBP15.37■□□□□ 0.05
SDC3-201ENST00000336798 KIF15Q9NS87 1388 aa15.37■□□□□ 0.05
SDC3-201ENST00000336798 HMOX1P09601 288 aa15.37■□□□□ 0.05
SDC3-201ENST00000336798 CGNL1Q0VF96 1302 aa15.37■□□□□ 0.05
SDC3-201ENST00000336798 CENPQQ7L2Z9 268 aaPredicted RBP15.36■□□□□ 0.05
SDC3-201ENST00000336798 PDS5BQ9NTI5 1447 aa15.36■□□□□ 0.05
SDC3-201ENST00000336798 RIPK4P57078 832 aa15.36■□□□□ 0.05
SDC3-201ENST00000336798 GSE1Q14687 1217 aa15.36■□□□□ 0.05
SDC3-201ENST00000336798 LRRFIP1Q32MZ4 808 aaKnown RBP15.36■□□□□ 0.05
SDC3-201ENST00000336798 ANKRD20A12PQ8NF67 263 aa15.36■□□□□ 0.05
SDC3-201ENST00000336798 SKIDA1Q1XH10 827 aa15.36■□□□□ 0.05
SDC3-201ENST00000336798 WASHC4Q2M389 1173 aa15.36■□□□□ 0.05
SDC3-201ENST00000336798 IKQ13123 557 aaPredicted RBP15.35■□□□□ 0.05
SDC3-201ENST00000336798 TTLL5Q6EMB2 1281 aa15.35■□□□□ 0.05
SDC3-201ENST00000336798 PPP1R1BQ9UD71 204 aaPredicted RBP15.35■□□□□ 0.05
SDC3-201ENST00000336798 EVC2Q86UK5 1308 aa15.35■□□□□ 0.05
SDC3-201ENST00000336798 GPS2Q13227 327 aa15.35■□□□□ 0.05
SDC3-201ENST00000336798 ODF2Q5BJF6 829 aa15.34■□□□□ 0.05
SDC3-201ENST00000336798 FMN1Q68DA7 1419 aa15.34■□□□□ 0.05
SDC3-201ENST00000336798 CECR2Q9BXF3 1484 aa15.34■□□□□ 0.05
SDC3-201ENST00000336798 PDE3BQ13370 1112 aa15.34■□□□□ 0.05
SDC3-201ENST00000336798 CYB5RLQ6IPT4 315 aa15.34■□□□□ 0.05
SDC3-201ENST00000336798 FAM13BQ9NYF5 915 aa15.33■□□□□ 0.04
SDC3-201ENST00000336798 RIC3Q7Z5B4 369 aa15.33■□□□□ 0.04
SDC3-201ENST00000336798 IL27Q8NEV9 243 aa15.33■□□□□ 0.04
SDC3-201ENST00000336798 VPS8Q8N3P4 1428 aa15.33■□□□□ 0.04
SDC3-201ENST00000336798 E9PSI1 815 aa15.33■□□□□ 0.04
SDC3-201ENST00000336798 FHOD3Q2V2M9 1422 aa15.33■□□□□ 0.04
SDC3-201ENST00000336798 DIAPH1O60610 1272 aaKnown RBP15.33■□□□□ 0.04
SDC3-201ENST00000336798 DDX58O95786 925 aaKnown RBP15.32■□□□□ 0.04
SDC3-201ENST00000336798 TSPYL4Q9UJ04 414 aa15.32■□□□□ 0.04
SDC3-201ENST00000336798 RRP1P56182 461 aaKnown RBP15.32■□□□□ 0.04
SDC3-201ENST00000336798 ABCF1Q8NE71 845 aaKnown RBP eCLIP15.32■□□□□ 0.04
SDC3-201ENST00000336798 UBE2Q2Q8WVN8 375 aa15.32■□□□□ 0.04
SDC3-201ENST00000336798 PDILTQ8N807 584 aa15.31■□□□□ 0.04
SDC3-201ENST00000336798 TMEM132AQ24JP5 1023 aa15.31■□□□□ 0.04
SDC3-201ENST00000336798 SMC3Q9UQE7 1217 aa15.31■□□□□ 0.04
SDC3-201ENST00000336798 STK11IPQ8N1F8 1099 aa15.31■□□□□ 0.04
SDC3-201ENST00000336798 CCDC144AA2RUR9 1427 aa15.31■□□□□ 0.04
SDC3-201ENST00000336798 SASS6Q6UVJ0 657 aa15.31■□□□□ 0.04
SDC3-201ENST00000336798 REC8O95072 547 aa15.3■□□□□ 0.04
SDC3-201ENST00000336798 EPS15P42566 896 aa15.3■□□□□ 0.04
SDC3-201ENST00000336798 CHMP4CQ96CF2 233 aa15.3■□□□□ 0.04
SDC3-201ENST00000336798 HOOK1Q9UJC3 728 aaKnown RBP15.3■□□□□ 0.04
SDC3-201ENST00000336798 RRP12Q5JTH9 1297 aaKnown RBP15.3■□□□□ 0.04
SDC3-201ENST00000336798 HSP90AB2PQ58FF8 381 aa15.3■□□□□ 0.04
SDC3-201ENST00000336798 SKOR2Q2VWA4 1001 aaPredicted RBP15.3■□□□□ 0.04
SDC3-201ENST00000336798 R3HCC1Q9Y3T6 440 aaKnown RBP15.3■□□□□ 0.04
SDC3-201ENST00000336798 RNF20Q5VTR2 975 aa15.29■□□□□ 0.04
SDC3-201ENST00000336798 LNPKQ9C0E8 428 aa15.29■□□□□ 0.04
SDC3-201ENST00000336798 ATP2B1P20020 1258 aa15.29■□□□□ 0.04
SDC3-201ENST00000336798 NLRP2Q9NX02 1062 aa15.29■□□□□ 0.04
SDC3-201ENST00000336798 PHLDB1Q86UU1 1377 aa15.29■□□□□ 0.04
SDC3-201ENST00000336798 RUFY1Q96T51 708 aa15.29■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms