RNA–Protein interactions for RNA: ENST00000324238.6

CRLF3-201, Transcript of cytokine receptor like factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CRLF3, Length 2,957 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CRLF3-201ENST00000324238 SCAPERQ9BY12 1400 aa25.97■■□□□ 1.75
CRLF3-201ENST00000324238 NEUROD2Q15784 382 aa25.97■■□□□ 1.75
CRLF3-201ENST00000324238 MYO5CQ9NQX4 1742 aa25.96■■□□□ 1.75
CRLF3-201ENST00000324238 ZMYM4Q5VZL5 1548 aa25.95■■□□□ 1.74
CRLF3-201ENST00000324238 DUOX2Q9NRD8 1548 aa25.95■■□□□ 1.74
CRLF3-201ENST00000324238 KDM2BQ8NHM5 1336 aa25.94■■□□□ 1.74
CRLF3-201ENST00000324238 ADGRF5Q8IZF2 1346 aa25.92■■□□□ 1.74
CRLF3-201ENST00000324238 GGT6Q6P531 493 aa25.92■■□□□ 1.74
CRLF3-201ENST00000324238 UNC13BO14795 1591 aa25.92■■□□□ 1.74
CRLF3-201ENST00000324238 SLFN5Q08AF3 891 aa25.91■■□□□ 1.74
CRLF3-201ENST00000324238 RRP7AQ9Y3A4 280 aaKnown RBP25.89■■□□□ 1.74
CRLF3-201ENST00000324238 ZNF521Q96K83 1311 aa25.89■■□□□ 1.74
CRLF3-201ENST00000324238 CENPQQ7L2Z9 268 aaPredicted RBP25.88■■□□□ 1.73
CRLF3-201ENST00000324238 DAXXQ9UER7 740 aaPredicted RBP25.88■■□□□ 1.73
CRLF3-201ENST00000324238 CARD14Q9BXL6 1004 aa25.88■■□□□ 1.73
CRLF3-201ENST00000324238 TRAK1Q9UPV9 953 aa25.87■■□□□ 1.73
CRLF3-201ENST00000324238 IQGAP3Q86VI3 1631 aa25.87■■□□□ 1.73
CRLF3-201ENST00000324238 C8orf34Q49A92 452 aa25.87■■□□□ 1.73
CRLF3-201ENST00000324238 ZCCHC11Q5TAX3 1644 aaKnown RBP25.86■■□□□ 1.73
CRLF3-201ENST00000324238 TMEM132EQ6IEE7 984 aa25.86■■□□□ 1.73
CRLF3-201ENST00000324238 UGGT1Q9NYU2 1555 aa25.85■■□□□ 1.73
CRLF3-201ENST00000324238 MAST1Q9Y2H9 1570 aa25.84■■□□□ 1.73
CRLF3-201ENST00000324238 IGHDP01880 384 aa25.83■■□□□ 1.73
CRLF3-201ENST00000324238 PANK1Q8TE04 598 aa25.83■■□□□ 1.73
CRLF3-201ENST00000324238 ATP10AO60312 1499 aa25.83■■□□□ 1.73
CRLF3-201ENST00000324238 PPM1GO15355 546 aaPredicted RBP25.83■■□□□ 1.72
CRLF3-201ENST00000324238 NFKBIBQ15653 356 aa25.83■■□□□ 1.72
CRLF3-201ENST00000324238 FAM161AQ3B820 660 aa25.83■■□□□ 1.72
CRLF3-201ENST00000324238 CDCA8Q53HL2 280 aa25.83■■□□□ 1.72
CRLF3-201ENST00000324238 GOLGA6L2Q8N9W4 650 aaPredicted RBP25.83■■□□□ 1.72
CRLF3-201ENST00000324238 FRAT1Q92837 279 aaPredicted RBP25.83■■□□□ 1.72
CRLF3-201ENST00000324238 SAFB2Q14151 953 aaKnown RBP eCLIP25.82■■□□□ 1.72
CRLF3-201ENST00000324238 DDRGK1Q96HY6 314 aa25.81■■□□□ 1.72
CRLF3-201ENST00000324238 EIF2AK4Q9P2K8 1649 aaKnown RBP25.81■■□□□ 1.72
CRLF3-201ENST00000324238 KANK1Q14678 1352 aa25.81■■□□□ 1.72
CRLF3-201ENST00000324238 COG6Q9Y2V7 657 aa25.81■■□□□ 1.72
CRLF3-201ENST00000324238 SHROOM2Q13796 1616 aa25.8■■□□□ 1.72
CRLF3-201ENST00000324238 ABCC1P33527 1531 aa25.8■■□□□ 1.72
CRLF3-201ENST00000324238 PLXNC1O60486 1568 aa25.8■■□□□ 1.72
CRLF3-201ENST00000324238 CANXP27824 592 aaKnown RBP25.8■■□□□ 1.72
CRLF3-201ENST00000324238 BCL2L13Q9BXK5 485 aa25.8■■□□□ 1.72
CRLF3-201ENST00000324238 FANCAO15360 1455 aa25.79■■□□□ 1.72
CRLF3-201ENST00000324238 SCAF11Q99590 1463 aaKnown RBP25.78■■□□□ 1.72
CRLF3-201ENST00000324238 TNNQ9UQP3 1299 aa25.78■■□□□ 1.72
CRLF3-201ENST00000324238 ASXL1Q8IXJ9 1541 aa25.76■■□□□ 1.71
CRLF3-201ENST00000324238 LAMC1P11047 1609 aa25.76■■□□□ 1.71
CRLF3-201ENST00000324238 BRPF3Q9ULD4 1205 aa25.76■■□□□ 1.71
CRLF3-201ENST00000324238 SLC12A5Q9H2X9 1139 aa25.75■■□□□ 1.71
CRLF3-201ENST00000324238 MADDQ8WXG6 1647 aa25.75■■□□□ 1.71
CRLF3-201ENST00000324238 INSRP06213 1382 aa25.74■■□□□ 1.71
CRLF3-201ENST00000324238 SEC24BO95487 1268 aa25.74■■□□□ 1.71
CRLF3-201ENST00000324238 TRMT2AQ8IZ69 625 aaKnown RBP25.73■■□□□ 1.71
CRLF3-201ENST00000324238 CFAP65Q6ZU64 1925 aaKnown RBP25.73■■□□□ 1.71
CRLF3-201ENST00000324238 FRAT2O75474 233 aaPredicted RBP25.72■■□□□ 1.71
CRLF3-201ENST00000324238 CLUAP1Q96AJ1 413 aa25.72■■□□□ 1.71
CRLF3-201ENST00000324238 ANO8Q9HCE9 1232 aaPredicted RBP25.72■■□□□ 1.71
CRLF3-201ENST00000324238 USP35Q9P2H5 1018 aa25.72■■□□□ 1.71
CRLF3-201ENST00000324238 ADGRL1O94910 1474 aa25.72■■□□□ 1.71
CRLF3-201ENST00000324238 RNF17Q9BXT8 1623 aaKnown RBP25.7■■□□□ 1.7
CRLF3-201ENST00000324238 CLTCL1P53675 1640 aa25.7■■□□□ 1.7
CRLF3-201ENST00000324238 E9PSI1 815 aa25.7■■□□□ 1.7
CRLF3-201ENST00000324238 NPM1P06748 294 aaKnown RBP eCLIP25.69■■□□□ 1.7
CRLF3-201ENST00000324238 WWC1Q8IX03 1113 aa25.69■■□□□ 1.7
CRLF3-201ENST00000324238 ZFYVE16Q7Z3T8 1539 aa25.69■■□□□ 1.7
CRLF3-201ENST00000324238 RAPGEF3O95398 923 aa25.68■■□□□ 1.7
CRLF3-201ENST00000324238 NKTRP30414 1462 aaKnown RBP25.68■■□□□ 1.7
CRLF3-201ENST00000324238 PIK3C2GO75747 1445 aa25.67■■□□□ 1.7
CRLF3-201ENST00000324238 CENPJQ9HC77 1338 aaPredicted RBP25.67■■□□□ 1.7
CRLF3-201ENST00000324238 MORC1Q86VD1 984 aa25.67■■□□□ 1.7
CRLF3-201ENST00000324238 GSE1Q14687 1217 aa25.66■■□□□ 1.7
CRLF3-201ENST00000324238 EIF3AQ14152 1382 aaKnown RBP25.65■■□□□ 1.7
CRLF3-201ENST00000324238 IQGAP1P46940 1657 aa25.65■■□□□ 1.7
CRLF3-201ENST00000324238 STK26Q9P289 416 aa25.65■■□□□ 1.7
CRLF3-201ENST00000324238 PTPRTO14522 1441 aa25.63■■□□□ 1.69
CRLF3-201ENST00000324238 ATP7AQ04656 1500 aa25.63■■□□□ 1.69
CRLF3-201ENST00000324238 RLBP1P12271 317 aa25.63■■□□□ 1.69
CRLF3-201ENST00000324238 ERVK-7P63135 1459 aa25.63■■□□□ 1.69
CRLF3-201ENST00000324238 ASXL2Q76L83 1435 aa25.63■■□□□ 1.69
CRLF3-201ENST00000324238 NOS1P29475 1434 aa25.62■■□□□ 1.69
CRLF3-201ENST00000324238 SYNMO15061 1565 aa25.62■■□□□ 1.69
CRLF3-201ENST00000324238 TCP11L2Q8N4U5 519 aa25.62■■□□□ 1.69
CRLF3-201ENST00000324238 TRPM2O94759 1503 aa25.62■■□□□ 1.69
CRLF3-201ENST00000324238 RTEL1-TNFRSF6BF6WH68 1400 aa25.62■■□□□ 1.69
CRLF3-201ENST00000324238 SLKQ9H2G2 1235 aaPredicted RBP25.61■■□□□ 1.69
CRLF3-201ENST00000324238 UHRF1BP1LA0JNW5 1464 aa25.6■■□□□ 1.69
CRLF3-201ENST00000324238 CLASP1Q7Z460 1538 aa25.6■■□□□ 1.69
CRLF3-201ENST00000324238 MTHFSP49914 203 aa25.59■■□□□ 1.69
CRLF3-201ENST00000324238 ZBTB4Q9P1Z0 1013 aaPredicted RBP25.59■■□□□ 1.69
CRLF3-201ENST00000324238 MYOM1P52179 1685 aa25.59■■□□□ 1.69
CRLF3-201ENST00000324238 PCDHB15Q9Y5E8 787 aa25.58■■□□□ 1.69
CRLF3-201ENST00000324238 NSD3Q9BZ95 1437 aa25.57■■□□□ 1.68
CRLF3-201ENST00000324238 USP19O94966 1318 aa25.57■■□□□ 1.68
CRLF3-201ENST00000324238 SPRYD3Q8NCJ5 442 aa25.56■■□□□ 1.68
CRLF3-201ENST00000324238 CABP2Q9NPB3 220 aa25.56■■□□□ 1.68
CRLF3-201ENST00000324238 SPHKAPQ2M3C7 1700 aa25.55■■□□□ 1.68
CRLF3-201ENST00000324238 RARSP54136 660 aaKnown RBP25.54■■□□□ 1.68
CRLF3-201ENST00000324238 NPC1L1Q9UHC9 1359 aa25.53■■□□□ 1.68
CRLF3-201ENST00000324238 CGNL1Q0VF96 1302 aa25.53■■□□□ 1.68
CRLF3-201ENST00000324238 ARXQ96QS3 562 aa25.52■■□□□ 1.68
CRLF3-201ENST00000324238 PDE3AQ14432 1141 aa25.51■■□□□ 1.67
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms