RNA–Protein interactions for RNA: ENST00000323959.8

CSTF3-201, Transcript of cleavage stimulation factor subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSTF3, Length 2,797 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSTF3-201ENST00000323959 BAG6P46379 1132 aa11.43□□□□□ -0.58
CSTF3-201ENST00000323959 DHX29Q7Z478 1369 aaKnown RBP11.43□□□□□ -0.58
CSTF3-201ENST00000323959 CADPS2Q86UW7 1296 aa11.42□□□□□ -0.58
CSTF3-201ENST00000323959 SIPA1L2Q9P2F8 1722 aaPredicted RBP11.42□□□□□ -0.58
CSTF3-201ENST00000323959 ARHGAP35Q9NRY4 1499 aa11.42□□□□□ -0.58
CSTF3-201ENST00000323959 LRRC59Q96AG4 307 aaKnown RBP11.42□□□□□ -0.58
CSTF3-201ENST00000323959 ASXL1Q8IXJ9 1541 aa11.42□□□□□ -0.58
CSTF3-201ENST00000323959 CHD4Q14839 1912 aa11.41□□□□□ -0.58
CSTF3-201ENST00000323959 RGPD1P0DJD0 1748 aa11.41□□□□□ -0.58
CSTF3-201ENST00000323959 CHD2O14647 1828 aaKnown RBP11.4□□□□□ -0.58
CSTF3-201ENST00000323959 WASHC2CQ9Y4E1 1318 aa11.39□□□□□ -0.59
CSTF3-201ENST00000323959 DCCP43146 1447 aa11.39□□□□□ -0.59
CSTF3-201ENST00000323959 GIGYF1O75420 1035 aaPredicted RBP11.39□□□□□ -0.59
CSTF3-201ENST00000323959 DISP2A7MBM2 1401 aa11.38□□□□□ -0.59
CSTF3-201ENST00000323959 PRELPP51888 382 aa11.38□□□□□ -0.59
CSTF3-201ENST00000323959 TMEM2Q9UHN6 1383 aa11.38□□□□□ -0.59
CSTF3-201ENST00000323959 BRWD3Q6RI45 1802 aa11.37□□□□□ -0.59
CSTF3-201ENST00000323959 LAMC1P11047 1609 aa11.37□□□□□ -0.59
CSTF3-201ENST00000323959 COL22A1Q8NFW1 1626 aaPredicted RBP11.37□□□□□ -0.59
CSTF3-201ENST00000323959 BRINP3Q76B58 766 aa11.36□□□□□ -0.59
CSTF3-201ENST00000323959 MARF1Q9Y4F3 1742 aaKnown RBP11.36□□□□□ -0.59
CSTF3-201ENST00000323959 CAMTA1Q9Y6Y1 1673 aa11.36□□□□□ -0.59
CSTF3-201ENST00000323959 R3HDM1Q15032 1099 aaKnown RBP11.35□□□□□ -0.59
CSTF3-201ENST00000323959 FMN1Q68DA7 1419 aa11.35□□□□□ -0.59
CSTF3-201ENST00000323959 ATF3P18847 181 aa11.34□□□□□ -0.59
CSTF3-201ENST00000323959 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.34□□□□□ -0.598e-9■■■□□ 16.8
CSTF3-201ENST00000323959 GJD4Q96KN9 370 aaPredicted RBP11.33□□□□□ -0.6
CSTF3-201ENST00000323959 GLI3P10071 1580 aa11.33□□□□□ -0.6
CSTF3-201ENST00000323959 C19orf44Q9H6X5 657 aa11.33□□□□□ -0.6
CSTF3-201ENST00000323959 PPP1R1BQ9UD71 204 aaPredicted RBP11.32□□□□□ -0.6
CSTF3-201ENST00000323959 PIK3C2BO00750 1634 aa11.32□□□□□ -0.6
CSTF3-201ENST00000323959 ADGRB2O60241 1585 aa11.31□□□□□ -0.6
CSTF3-201ENST00000323959 EFCAB6Q5THR3 1501 aa11.31□□□□□ -0.6
CSTF3-201ENST00000323959 PARD3Q8TEW0 1356 aa11.3□□□□□ -0.6
CSTF3-201ENST00000323959 KIF3BO15066 747 aa11.3□□□□□ -0.6
CSTF3-201ENST00000323959 ADAMTS2O95450 1211 aa11.3□□□□□ -0.6
CSTF3-201ENST00000323959 HNRNPMP52272 730 aaKnown RBP eCLIP11.28□□□□□ -0.6
CSTF3-201ENST00000323959 EHMT2Q96KQ7 1210 aa11.28□□□□□ -0.6
CSTF3-201ENST00000323959 SPON1Q9HCB6 807 aa11.28□□□□□ -0.6
CSTF3-201ENST00000323959 RPRD2Q5VT52 1461 aaKnown RBP11.28□□□□□ -0.6
CSTF3-201ENST00000323959 ADGRB3O60242 1522 aa11.28□□□□□ -0.6
CSTF3-201ENST00000323959 TNS1Q9HBL0 1735 aaKnown RBP11.28□□□□□ -0.6
CSTF3-201ENST00000323959 CCDC18Q5T9S5 1454 aa11.28□□□□□ -0.6
CSTF3-201ENST00000323959 LRRIQ1Q96JM4 1722 aa11.27□□□□□ -0.61
CSTF3-201ENST00000323959 EIF2AK4Q9P2K8 1649 aaKnown RBP11.27□□□□□ -0.61
CSTF3-201ENST00000323959 ARHGAP31Q2M1Z3 1444 aa11.27□□□□□ -0.61
CSTF3-201ENST00000323959 RREB1Q92766 1687 aa11.27□□□□□ -0.61
CSTF3-201ENST00000323959 MST1RQ04912 1400 aa11.26□□□□□ -0.61
CSTF3-201ENST00000323959 PIK3R4Q99570 1358 aa11.26□□□□□ -0.61
CSTF3-201ENST00000323959 C14orf37Q86TY3 774 aa11.25□□□□□ -0.61
CSTF3-201ENST00000323959 SLC26A8Q96RN1 970 aa11.25□□□□□ -0.61
CSTF3-201ENST00000323959 MYOM2P54296 1465 aa11.25□□□□□ -0.61
CSTF3-201ENST00000323959 KCNQ2O43526 872 aa11.24□□□□□ -0.61
CSTF3-201ENST00000323959 PPP1R15AO75807 674 aaPredicted RBP11.23□□□□□ -0.61
CSTF3-201ENST00000323959 HSPA6P17066 643 aa11.23□□□□□ -0.61
CSTF3-201ENST00000323959 PTPN23Q9H3S7 1636 aa11.23□□□□□ -0.61
CSTF3-201ENST00000323959 PLEKHG1Q9ULL1 1385 aa11.23□□□□□ -0.61
CSTF3-201ENST00000323959 KRT27Q7Z3Y8 459 aa11.22□□□□□ -0.61
CSTF3-201ENST00000323959 ZNF777Q9ULD5 760 aaPredicted RBP11.22□□□□□ -0.61
CSTF3-201ENST00000323959 CEP152O94986 1710 aa11.21□□□□□ -0.61
CSTF3-201ENST00000323959 NUP188Q5SRE5 1749 aa11.21□□□□□ -0.61
CSTF3-201ENST00000323959 SUPT5HO00267 1087 aaKnown RBP11.21□□□□□ -0.61
CSTF3-201ENST00000323959 ONECUT3O60422 494 aaPredicted RBP11.21□□□□□ -0.61
CSTF3-201ENST00000323959 MBD5Q9P267 1494 aa11.21□□□□□ -0.62
CSTF3-201ENST00000323959 CAPN15O75808 1086 aa11.21□□□□□ -0.62
CSTF3-201ENST00000323959 SEPT12Q8IYM1 358 aa11.21□□□□□ -0.62
CSTF3-201ENST00000323959 SHANK3Q9BYB0 1731 aa11.2□□□□□ -0.62
CSTF3-201ENST00000323959 EN1Q05925 392 aaPredicted RBP11.2□□□□□ -0.62
CSTF3-201ENST00000323959 SLIT2O94813 1529 aa11.2□□□□□ -0.62
CSTF3-201ENST00000323959 EHBP1L1Q8N3D4 1523 aa11.2□□□□□ -0.62
CSTF3-201ENST00000323959 TBX22Q9Y458 520 aa11.19□□□□□ -0.62
CSTF3-201ENST00000323959 AATKQ6ZMQ8 1374 aa11.19□□□□□ -0.62
CSTF3-201ENST00000323959 DLC1Q96QB1 1528 aa11.19□□□□□ -0.62
CSTF3-201ENST00000323959 UNC5CLQ8IV45 518 aa11.19□□□□□ -0.62
CSTF3-201ENST00000323959 NRKQ7Z2Y5 1582 aa11.18□□□□□ -0.62
CSTF3-201ENST00000323959 TNS4Q8IZW8 715 aa11.18□□□□□ -0.62
CSTF3-201ENST00000323959 NEXMIFQ5QGS0 1516 aa11.18□□□□□ -0.62
CSTF3-201ENST00000323959 SOS2Q07890 1332 aaPredicted RBP11.18□□□□□ -0.62
CSTF3-201ENST00000323959 NBPF8Q3BBV2 869 aa11.17□□□□□ -0.62
CSTF3-201ENST00000323959 NBPF14Q5TI25 921 aa11.17□□□□□ -0.62
CSTF3-201ENST00000323959 NWD2Q9ULI1 1742 aa11.17□□□□□ -0.62
CSTF3-201ENST00000323959 FYCO1Q9BQS8 1478 aa11.16□□□□□ -0.62
CSTF3-201ENST00000323959 EP400Q96L91 3159 aa11.16□□□□□ -0.62
CSTF3-201ENST00000323959 CROCC2H7BZ55 1655 aa11.16□□□□□ -0.62
CSTF3-201ENST00000323959 FAM83GA6ND36 823 aa11.16□□□□□ -0.62
CSTF3-201ENST00000323959 STAG3Q9UJ98 1225 aa11.16□□□□□ -0.62
CSTF3-201ENST00000323959 ATP1B4Q9UN42 357 aaPredicted RBP11.16□□□□□ -0.62
CSTF3-201ENST00000323959 TRPM2O94759 1503 aa11.16□□□□□ -0.62
CSTF3-201ENST00000323959 TMEM131LA2VDJ0 1609 aa11.15□□□□□ -0.62
CSTF3-201ENST00000323959 CCDC141Q6ZP82 1450 aa11.15□□□□□ -0.62
CSTF3-201ENST00000323959 CASZ1Q86V15 1759 aa11.15□□□□□ -0.62
CSTF3-201ENST00000323959 CAMKK2Q96RR4 588 aa11.15□□□□□ -0.63
CSTF3-201ENST00000323959 CFDP1Q9UEE9 299 aaPredicted RBP11.15□□□□□ -0.63
CSTF3-201ENST00000323959 MYOM1P52179 1685 aa11.14□□□□□ -0.63
CSTF3-201ENST00000323959 VPS72Q15906 364 aa11.14□□□□□ -0.63
CSTF3-201ENST00000323959 ZFYVE9O95405 1425 aa11.13□□□□□ -0.63
CSTF3-201ENST00000323959 MTUS2Q5JR59 1369 aa11.13□□□□□ -0.63
CSTF3-201ENST00000323959 XRN1Q8IZH2 1706 aaKnown RBP11.12□□□□□ -0.63
CSTF3-201ENST00000323959 HDGFP51858 240 aaKnown RBP11.12□□□□□ -0.63
CSTF3-201ENST00000323959 EZH2Q15910 746 aaKnown RBP11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 69.8 ms