RNA–Protein interactions for RNA: ENST00000316407.8

USF3-201, Transcript of upstream transcription factor family member 3, humanhuman

APPRIS P2 TSL 5 BASIC

Gene USF3, Length 13,708 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-201ENST00000316407 GPATCH11Q8N954 259 aa10.62□□□□□ -0.71
USF3-201ENST00000316407 TRAK2O60296 914 aa10.62□□□□□ -0.71
USF3-201ENST00000316407 CENPHQ9H3R5 247 aa10.62□□□□□ -0.71
USF3-201ENST00000316407 RAB3GAP2Q9H2M9 1393 aa10.61□□□□□ -0.71
USF3-201ENST00000316407 CGNQ9P2M7 1197 aaKnown RBP10.61□□□□□ -0.71
USF3-201ENST00000316407 DCTN1Q14203 1278 aa10.61□□□□□ -0.71
USF3-201ENST00000316407 CCDC27Q2M243 656 aa10.61□□□□□ -0.71
USF3-201ENST00000316407 CHMP5Q9NZZ3 219 aa10.61□□□□□ -0.71
USF3-201ENST00000316407 TRERF1Q96PN7 1200 aa10.61□□□□□ -0.71
USF3-201ENST00000316407 KIAA0754O94854 1291 aa10.61□□□□□ -0.71
USF3-201ENST00000316407 CBX1P83916 185 aa10.61□□□□□ -0.71
USF3-201ENST00000316407 SPAG9O60271 1321 aaKnown RBP10.6□□□□□ -0.71
USF3-201ENST00000316407 ZBED9Q6R2W3 1325 aa10.6□□□□□ -0.71
USF3-201ENST00000316407 FAM193AP78312 1265 aa10.6□□□□□ -0.71
USF3-201ENST00000316407 SMC2O95347 1197 aa10.6□□□□□ -0.71
USF3-201ENST00000316407 DYDC1Q8WWB3 177 aa10.6□□□□□ -0.71
USF3-201ENST00000316407 FMNL2Q96PY5 1086 aa10.6□□□□□ -0.71
USF3-201ENST00000316407 ANKRD20A12PQ8NF67 263 aa10.59□□□□□ -0.71
USF3-201ENST00000316407 FAM177A1Q8N128 213 aaPredicted RBP10.59□□□□□ -0.71
USF3-201ENST00000316407 REC8O95072 547 aa10.59□□□□□ -0.71
USF3-201ENST00000316407 IPO4Q8TEX9 1081 aaKnown RBP10.59□□□□□ -0.71
USF3-201ENST00000316407 ELL2O00472 640 aaPredicted RBP10.59□□□□□ -0.71
USF3-201ENST00000316407 TAF3Q5VWG9 929 aa10.58□□□□□ -0.72
USF3-201ENST00000316407 DEF6Q9H4E7 631 aa10.58□□□□□ -0.72
USF3-201ENST00000316407 C22orf23Q9BZE7 217 aa10.58□□□□□ -0.72
USF3-201ENST00000316407 KDM4AO75164 1064 aa10.58□□□□□ -0.72
USF3-201ENST00000316407 CCDC173Q0VFZ6 552 aa10.58□□□□□ -0.72
USF3-201ENST00000316407 CT47B1P0C2W7 299 aaPredicted RBP10.58□□□□□ -0.72
USF3-201ENST00000316407 CHMP7Q8WUX9 453 aaPredicted RBP10.58□□□□□ -0.72
USF3-201ENST00000316407 RAD21O60216 631 aa10.57□□□□□ -0.72
USF3-201ENST00000316407 TSPY26PQ9H489 355 aa10.57□□□□□ -0.72
USF3-201ENST00000316407 TNIKQ9UKE5 1360 aa10.57□□□□□ -0.72
USF3-201ENST00000316407 ZMYND15Q9H091 742 aa10.57□□□□□ -0.72
USF3-201ENST00000316407 PLEKHD1A6NEE1 506 aa10.57□□□□□ -0.72
USF3-201ENST00000316407 TICAM2Q86XR7 235 aa10.57□□□□□ -0.72
USF3-201ENST00000316407 KIF15Q9NS87 1388 aa10.56□□□□□ -0.72
USF3-201ENST00000316407 SUGP2Q8IX01 1082 aaKnown RBP eCLIP10.56□□□□□ -0.72
USF3-201ENST00000316407 HSP90AB2PQ58FF8 381 aa10.56□□□□□ -0.72
USF3-201ENST00000316407 NAT10Q9H0A0 1025 aaKnown RBP10.56□□□□□ -0.72
USF3-201ENST00000316407 TRIM34Q9BYJ4 488 aa10.56□□□□□ -0.72
USF3-201ENST00000316407 BRPF1P55201 1214 aaPredicted RBP10.56□□□□□ -0.72
USF3-201ENST00000316407 AKAP17AQ02040 695 aaKnown RBP10.56□□□□□ -0.72
USF3-201ENST00000316407 PKD2Q13563 968 aa10.56□□□□□ -0.72
USF3-201ENST00000316407 CT47A1Q5JQC4 288 aaPredicted RBP10.55□□□□□ -0.72
USF3-201ENST00000316407 HOOK1Q9UJC3 728 aaKnown RBP10.55□□□□□ -0.72
USF3-201ENST00000316407 ENOX2Q16206 610 aaKnown RBP10.55□□□□□ -0.72
USF3-201ENST00000316407 SMC3Q9UQE7 1217 aa10.55□□□□□ -0.72
USF3-201ENST00000316407 PRPF40AO75400 957 aaKnown RBP10.55□□□□□ -0.72
USF3-201ENST00000316407 ABCC8Q09428 1581 aa10.54□□□□□ -0.72
USF3-201ENST00000316407 TRIM29Q14134 588 aa10.54□□□□□ -0.72
USF3-201ENST00000316407 UBE2Q2Q8WVN8 375 aa10.54□□□□□ -0.72
USF3-201ENST00000316407 NLRP13Q86W25 1043 aa10.54□□□□□ -0.72
USF3-201ENST00000316407 UTP3Q9NQZ2 479 aaKnown RBP eCLIP10.54□□□□□ -0.722e-9■■■■■ 223.6
USF3-201ENST00000316407 NECTIN2Q92692 538 aa10.54□□□□□ -0.72
USF3-201ENST00000316407 PANK1Q8TE04 598 aa10.54□□□□□ -0.72
USF3-201ENST00000316407 TCEAL9Q9UHQ7 104 aa10.54□□□□□ -0.72
USF3-201ENST00000316407 CPLX1O14810 134 aa10.53□□□□□ -0.72
USF3-201ENST00000316407 CEBPZQ03701 1054 aaKnown RBP10.53□□□□□ -0.72
USF3-201ENST00000316407 GIMAP7Q8NHV1 300 aa10.53□□□□□ -0.72
USF3-201ENST00000316407 MYBBP1AQ9BQG0 1328 aaKnown RBP10.53□□□□□ -0.72
USF3-201ENST00000316407 HMGN5P82970 282 aaKnown RBP10.53□□□□□ -0.72
USF3-201ENST00000316407 CCDC73Q6ZRK6 1079 aa10.53□□□□□ -0.72
USF3-201ENST00000316407 LNPKQ9C0E8 428 aa10.53□□□□□ -0.72
USF3-201ENST00000316407 ZFYVE27Q5T4F4 411 aa10.53□□□□□ -0.72
USF3-201ENST00000316407 EIF3AQ14152 1382 aaKnown RBP10.53□□□□□ -0.72
USF3-201ENST00000316407 HDGFL2Q7Z4V5 671 aaPredicted RBP10.53□□□□□ -0.72
USF3-201ENST00000316407 STK11IPQ8N1F8 1099 aa10.53□□□□□ -0.72
USF3-201ENST00000316407 GOLGA6L10A6NI86 522 aa10.52□□□□□ -0.73
USF3-201ENST00000316407 AKNAQ7Z591 1439 aa10.52□□□□□ -0.73
USF3-201ENST00000316407 RB1CC1Q8TDY2 1594 aa10.52□□□□□ -0.73
USF3-201ENST00000316407 PDE3BQ13370 1112 aa10.52□□□□□ -0.73
USF3-201ENST00000316407 CCDC102AQ96A19 550 aa10.52□□□□□ -0.73
USF3-201ENST00000316407 GRPEL1Q9HAV7 217 aa10.52□□□□□ -0.73
USF3-201ENST00000316407 NUCB2P80303 420 aa10.51□□□□□ -0.73
USF3-201ENST00000316407 LMOD3Q0VAK6 560 aa10.51□□□□□ -0.73
USF3-201ENST00000316407 PDCL2Q8N4E4 241 aa10.51□□□□□ -0.73
USF3-201ENST00000316407 PHLDB1Q86UU1 1377 aa10.51□□□□□ -0.73
USF3-201ENST00000316407 OLFM4Q6UX06 510 aa10.51□□□□□ -0.73
USF3-201ENST00000316407 EPS15P42566 896 aa10.51□□□□□ -0.73
USF3-201ENST00000316407 KANK1Q14678 1352 aa10.51□□□□□ -0.73
USF3-201ENST00000316407 ODF2Q5BJF6 829 aa10.51□□□□□ -0.73
USF3-201ENST00000316407 CCDC112Q8NEF3 446 aa10.51□□□□□ -0.73
USF3-201ENST00000316407 SDF4Q9BRK5 362 aa10.51□□□□□ -0.73
USF3-201ENST00000316407 TAX1BP1Q86VP1 789 aa10.51□□□□□ -0.73
USF3-201ENST00000316407 ZKSCAN1P17029 563 aaPredicted RBP10.51□□□□□ -0.73
USF3-201ENST00000316407 ERCC4Q92889 916 aaPredicted RBP10.51□□□□□ -0.73
USF3-201ENST00000316407 ESPNB1AK53 854 aa10.5□□□□□ -0.73
USF3-201ENST00000316407 RSPH4AQ5TD94 716 aa10.5□□□□□ -0.73
USF3-201ENST00000316407 BBXQ8WY36 941 aaPredicted RBP10.5□□□□□ -0.73
USF3-201ENST00000316407 ZKSCAN2Q63HK3 967 aa10.5□□□□□ -0.73
USF3-201ENST00000316407 FIBPO43427 364 aa10.5□□□□□ -0.73
USF3-201ENST00000316407 SYNE3Q6ZMZ3 975 aa10.5□□□□□ -0.73
USF3-201ENST00000316407 SPDYE4A6NLX3 237 aa10.5□□□□□ -0.73
USF3-201ENST00000316407 ANKRD62A6NC57 917 aa10.49□□□□□ -0.73
USF3-201ENST00000316407 KANK4Q5T7N3 995 aaPredicted RBP10.49□□□□□ -0.73
USF3-201ENST00000316407 WRNQ14191 1432 aaPredicted RBP eCLIP10.49□□□□□ -0.73
USF3-201ENST00000316407 NFXL1Q6ZNB6 911 aa10.49□□□□□ -0.73
USF3-201ENST00000316407 LTV1Q96GA3 475 aaPredicted RBP10.49□□□□□ -0.73
USF3-201ENST00000316407 KINO60870 393 aaKnown RBP10.49□□□□□ -0.73
USF3-201ENST00000316407 NUTM2DQ5VT03 806 aaPredicted RBP10.48□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 111.6 ms