RNA–Protein interactions for RNA: ENST00000306324.3

HOXD4-201, Transcript of homeobox D4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXD4, Length 1,464 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4-201ENST00000306324 ZFYVE9O95405 1425 aa32.6■■■□□ 2.81
HOXD4-201ENST00000306324 RGL3Q3MIN7 710 aa32.59■■■□□ 2.81
HOXD4-201ENST00000306324 SPATA31E1Q6ZUB1 1445 aa32.58■■■□□ 2.81
HOXD4-201ENST00000306324 HDGFP51858 240 aaKnown RBP32.58■■■□□ 2.81
HOXD4-201ENST00000306324 NUTM2DQ5VT03 806 aaPredicted RBP32.58■■■□□ 2.81
HOXD4-201ENST00000306324 PPP1R15AO75807 674 aaPredicted RBP32.56■■■□□ 2.8
HOXD4-201ENST00000306324 NEXMIFQ5QGS0 1516 aa32.56■■■□□ 2.8
HOXD4-201ENST00000306324 IQGAP1P46940 1657 aa32.56■■■□□ 2.8
HOXD4-201ENST00000306324 PPLO60437 1756 aa32.55■■■□□ 2.8
HOXD4-201ENST00000306324 DMRT2Q9Y5R5 561 aa32.55■■■□□ 2.8
HOXD4-201ENST00000306324 ABCF1Q8NE71 845 aaKnown RBP eCLIP32.54■■■□□ 2.8
HOXD4-201ENST00000306324 NPHP4O75161 1426 aaPredicted RBP32.54■■■□□ 2.8
HOXD4-201ENST00000306324 MED14O60244 1454 aa32.53■■■□□ 2.8
HOXD4-201ENST00000306324 IFT172Q9UG01 1749 aa32.51■■■□□ 2.8
HOXD4-201ENST00000306324 SENP3Q9H4L4 574 aaPredicted RBP32.51■■■□□ 2.79
HOXD4-201ENST00000306324 SIN3AQ96ST3 1273 aa32.5■■■□□ 2.79
HOXD4-201ENST00000306324 RPGRIP1LQ68CZ1 1315 aa32.5■■■□□ 2.79
HOXD4-201ENST00000306324 BCANQ96GW7 911 aa32.48■■■□□ 2.79
HOXD4-201ENST00000306324 NEUROD1Q13562 356 aa32.47■■■□□ 2.79
HOXD4-201ENST00000306324 PLEKHG1Q9ULL1 1385 aa32.45■■■□□ 2.78
HOXD4-201ENST00000306324 VGFO15240 615 aaPredicted RBP32.42■■■□□ 2.78
HOXD4-201ENST00000306324 CCER1Q8TC90 406 aaPredicted RBP32.41■■■□□ 2.78
HOXD4-201ENST00000306324 SLC26A8Q96RN1 970 aa32.38■■■□□ 2.77
HOXD4-201ENST00000306324 NRXN3Q9Y4C0 1643 aa32.36■■■□□ 2.77
HOXD4-201ENST00000306324 DCAF11Q8TEB1 546 aa32.35■■■□□ 2.77
HOXD4-201ENST00000306324 SETBP1Q9Y6X0 1596 aa32.35■■■□□ 2.77
HOXD4-201ENST00000306324 ADGRF5Q8IZF2 1346 aa32.35■■■□□ 2.77
HOXD4-201ENST00000306324 KDM2AQ9Y2K7 1162 aa32.34■■■□□ 2.77
HOXD4-201ENST00000306324 MYOM2P54296 1465 aa32.32■■■□□ 2.76
HOXD4-201ENST00000306324 ADAMTS13Q76LX8 1427 aa32.31■■■□□ 2.76
HOXD4-201ENST00000306324 CLSPNQ9HAW4 1339 aa32.31■■■□□ 2.76
HOXD4-201ENST00000306324 DIP2AQ14689 1571 aa32.3■■■□□ 2.76
HOXD4-201ENST00000306324 ZNF335Q9H4Z2 1342 aaPredicted RBP32.27■■■□□ 2.76
HOXD4-201ENST00000306324 L3MBTL2Q969R5 705 aa32.26■■■□□ 2.75
HOXD4-201ENST00000306324 TBX22Q9Y458 520 aa32.26■■■□□ 2.75
HOXD4-201ENST00000306324 PIK3C2GO75747 1445 aa32.25■■■□□ 2.75
HOXD4-201ENST00000306324 ALKQ9UM73 1620 aa32.25■■■□□ 2.75
HOXD4-201ENST00000306324 TONSLQ96HA7 1378 aa32.25■■■□□ 2.75
HOXD4-201ENST00000306324 NRXN1Q9ULB1 1477 aa32.24■■■□□ 2.75
HOXD4-201ENST00000306324 SETD1AO15047 1707 aaKnown RBP32.24■■■□□ 2.75
HOXD4-201ENST00000306324 STAC3Q96MF2 364 aa32.23■■■□□ 2.75
HOXD4-201ENST00000306324 STRCP1A6NGW2 1772 aa32.23■■■□□ 2.75
HOXD4-201ENST00000306324 CHD2O14647 1828 aaKnown RBP32.23■■■□□ 2.75
HOXD4-201ENST00000306324 LAMC1P11047 1609 aa32.18■■■□□ 2.74
HOXD4-201ENST00000306324 METP08581 1390 aa32.17■■■□□ 2.74
HOXD4-201ENST00000306324 LTBP4Q8N2S1 1624 aa32.16■■■□□ 2.74
HOXD4-201ENST00000306324 PIK3R4Q99570 1358 aa32.15■■■□□ 2.74
HOXD4-201ENST00000306324 KCNA6P17658 529 aa32.14■■■□□ 2.74
HOXD4-201ENST00000306324 CFAP70Q5T0N1 1121 aa32.14■■■□□ 2.74
HOXD4-201ENST00000306324 NWD1Q149M9 1564 aa32.13■■■□□ 2.73
HOXD4-201ENST00000306324 C14orf93Q9H972 538 aaKnown RBP32.12■■■□□ 2.73
HOXD4-201ENST00000306324 PRAG1Q86YV5 1406 aa32.11■■■□□ 2.73
HOXD4-201ENST00000306324 PTPRUQ92729 1446 aa32.1■■■□□ 2.73
HOXD4-201ENST00000306324 CPS1P31327 1500 aa32.1■■■□□ 2.73
HOXD4-201ENST00000306324 TMEM132EQ6IEE7 984 aa32.08■■■□□ 2.73
HOXD4-201ENST00000306324 AMOTL2Q9Y2J4 779 aa32.08■■■□□ 2.73
HOXD4-201ENST00000306324 ASXL1Q8IXJ9 1541 aa32.07■■■□□ 2.72
HOXD4-201ENST00000306324 XRN1Q8IZH2 1706 aaKnown RBP32.07■■■□□ 2.72
HOXD4-201ENST00000306324 KIAA1210Q9ULL0 1709 aa32.07■■■□□ 2.72
HOXD4-201ENST00000306324 NKTRP30414 1462 aaKnown RBP32.05■■■□□ 2.72
HOXD4-201ENST00000306324 TIMELESSQ9UNS1 1208 aa32.02■■■□□ 2.72
HOXD4-201ENST00000306324 TRPM1Q7Z4N2 1603 aa32.01■■■□□ 2.72
HOXD4-201ENST00000306324 STK26Q9P289 416 aa32.01■■■□□ 2.71
HOXD4-201ENST00000306324 LRRC7Q96NW7 1537 aa32.01■■■□□ 2.71
HOXD4-201ENST00000306324 XIRP1Q702N8 1843 aaKnown RBP32.01■■■□□ 2.71
HOXD4-201ENST00000306324 PROSER2Q86WR7 435 aaPredicted RBP32■■■□□ 2.71
HOXD4-201ENST00000306324 ADGRB1O14514 1584 aa31.99■■■□□ 2.71
HOXD4-201ENST00000306324 CERKQ8TCT0 537 aa31.98■■■□□ 2.71
HOXD4-201ENST00000306324 YTHDC2Q9H6S0 1430 aaKnown RBP31.98■■■□□ 2.71
HOXD4-201ENST00000306324 KNDC1Q76NI1 1749 aa31.98■■■□□ 2.71
HOXD4-201ENST00000306324 NBPF8Q3BBV2 869 aa31.97■■■□□ 2.71
HOXD4-201ENST00000306324 RBM33Q96EV2 1170 aaKnown RBP31.97■■■□□ 2.71
HOXD4-201ENST00000306324 LRPPRCP42704 1394 aaKnown RBP31.97■■■□□ 2.71
HOXD4-201ENST00000306324 NBPF1Q3BBV0 1214 aa31.95■■■□□ 2.7
HOXD4-201ENST00000306324 TMEM94Q12767 1356 aa31.94■■■□□ 2.7
HOXD4-201ENST00000306324 PTCH1Q13635 1447 aa31.92■■■□□ 2.7
HOXD4-201ENST00000306324 ABCC11Q96J66 1382 aa31.91■■■□□ 2.7
HOXD4-201ENST00000306324 ROBO2Q9HCK4 1378 aa31.91■■■□□ 2.7
HOXD4-201ENST00000306324 TECPR2O15040 1411 aa31.9■■■□□ 2.7
HOXD4-201ENST00000306324 ROCK2O75116 1388 aaKnown RBP31.89■■■□□ 2.69
HOXD4-201ENST00000306324 TRAK1Q9UPV9 953 aa31.88■■■□□ 2.69
HOXD4-201ENST00000306324 IQSEC2Q5JU85 1478 aa31.88■■■□□ 2.69
HOXD4-201ENST00000306324 C14orf37Q86TY3 774 aa31.87■■■□□ 2.69
HOXD4-201ENST00000306324 RALGAPBQ86X10 1494 aa31.85■■■□□ 2.69
HOXD4-201ENST00000306324 ARHGEF28Q8N1W1 1705 aaKnown RBP31.84■■■□□ 2.69
HOXD4-201ENST00000306324 DLC1Q96QB1 1528 aa31.83■■■□□ 2.69
HOXD4-201ENST00000306324 WAPLQ7Z5K2 1190 aa31.83■■■□□ 2.69
HOXD4-201ENST00000306324 NALCNQ8IZF0 1738 aa31.82■■■□□ 2.69
HOXD4-201ENST00000306324 NCOA3Q9Y6Q9 1424 aa31.82■■■□□ 2.68
HOXD4-201ENST00000306324 FAM135BQ49AJ0 1406 aa31.8■■■□□ 2.68
HOXD4-201ENST00000306324 MSH6P52701 1360 aa31.8■■■□□ 2.68
HOXD4-201ENST00000306324 PLEKHH1Q9ULM0 1364 aa31.8■■■□□ 2.68
HOXD4-201ENST00000306324 PRAM1Q96QH2 718 aa31.79■■■□□ 2.68
HOXD4-201ENST00000306324 SIPA1L2Q9P2F8 1722 aaPredicted RBP31.79■■■□□ 2.68
HOXD4-201ENST00000306324 SIRT1Q96EB6 747 aa31.78■■■□□ 2.68
HOXD4-201ENST00000306324 POGKQ9P215 609 aa31.78■■■□□ 2.68
HOXD4-201ENST00000306324 SAFB2Q14151 953 aaKnown RBP eCLIP31.78■■■□□ 2.68
HOXD4-201ENST00000306324 CARD11Q9BXL7 1154 aa31.77■■■□□ 2.68
HOXD4-201ENST00000306324 GPRASP1Q5JY77 1395 aa31.77■■■□□ 2.68
HOXD4-201ENST00000306324 ADGRL3Q9HAR2 1447 aa31.76■■■□□ 2.67
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms