RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 BCANQ96GW7 911 aa22.91■■□□□ 1.26
CCDC88B-201ENST00000301897 FAM50AQ14320 339 aaKnown RBP22.9■■□□□ 1.26
CCDC88B-201ENST00000301897 ROBO1Q9Y6N7 1651 aa22.9■■□□□ 1.26
CCDC88B-201ENST00000301897 MSH6P52701 1360 aa22.89■■□□□ 1.26
CCDC88B-201ENST00000301897 PLEKHG1Q9ULL1 1385 aa22.88■■□□□ 1.25
CCDC88B-201ENST00000301897 RGS17Q9UGC6 210 aaPredicted RBP22.87■■□□□ 1.25
CCDC88B-201ENST00000301897 ZFYVE9O95405 1425 aa22.87■■□□□ 1.25
CCDC88B-201ENST00000301897 PPP1R15AO75807 674 aaPredicted RBP22.86■■□□□ 1.25
CCDC88B-201ENST00000301897 GCC2Q8IWJ2 1684 aa22.86■■□□□ 1.25
CCDC88B-201ENST00000301897 CHD2O14647 1828 aaKnown RBP22.85■■□□□ 1.25
CCDC88B-201ENST00000301897 RIMS2Q9UQ26 1411 aa22.84■■□□□ 1.25
CCDC88B-201ENST00000301897 ABCF1Q8NE71 845 aaKnown RBP eCLIP22.84■■□□□ 1.25
CCDC88B-201ENST00000301897 MYO5BQ9ULV0 1848 aa22.83■■□□□ 1.25
CCDC88B-201ENST00000301897 SLAIN2Q9P270 581 aa22.83■■□□□ 1.25
CCDC88B-201ENST00000301897 TMEM131LA2VDJ0 1609 aa22.82■■□□□ 1.24
CCDC88B-201ENST00000301897 NCOA3Q9Y6Q9 1424 aa22.82■■□□□ 1.24
CCDC88B-201ENST00000301897 UNC13BO14795 1591 aa22.81■■□□□ 1.24
CCDC88B-201ENST00000301897 RBM33Q96EV2 1170 aaKnown RBP22.81■■□□□ 1.24
CCDC88B-201ENST00000301897 TBX22Q9Y458 520 aa22.81■■□□□ 1.24
CCDC88B-201ENST00000301897 PHLPP1O60346 1717 aa22.78■■□□□ 1.24
CCDC88B-201ENST00000301897 ROCK1Q13464 1354 aa22.77■■□□□ 1.24
CCDC88B-201ENST00000301897 DIP2AQ14689 1571 aa22.77■■□□□ 1.24
CCDC88B-201ENST00000301897 JCADQ9P266 1359 aa22.76■■□□□ 1.23
CCDC88B-201ENST00000301897 PIK3R4Q99570 1358 aa22.76■■□□□ 1.23
CCDC88B-201ENST00000301897 CHGAP10645 457 aaKnown RBP22.75■■□□□ 1.23
CCDC88B-201ENST00000301897 POTEAQ6S8J7 498 aa22.74■■□□□ 1.23
CCDC88B-201ENST00000301897 E9PCH4 1651 aa22.74■■□□□ 1.23
CCDC88B-201ENST00000301897 IQGAP3Q86VI3 1631 aa22.73■■□□□ 1.23
CCDC88B-201ENST00000301897 C14orf37Q86TY3 774 aa22.72■■□□□ 1.23
CCDC88B-201ENST00000301897 CADPS2Q86UW7 1296 aa22.71■■□□□ 1.23
CCDC88B-201ENST00000301897 C19orf44Q9H6X5 657 aa22.7■■□□□ 1.22
CCDC88B-201ENST00000301897 ADAMTS13Q76LX8 1427 aa22.7■■□□□ 1.22
CCDC88B-201ENST00000301897 COL16A1Q07092 1604 aaPredicted RBP22.68■■□□□ 1.22
CCDC88B-201ENST00000301897 TRPM2O94759 1503 aa22.68■■□□□ 1.22
CCDC88B-201ENST00000301897 ATF3P18847 181 aa22.68■■□□□ 1.22
CCDC88B-201ENST00000301897 NUP155O75694 1391 aa22.67■■□□□ 1.22
CCDC88B-201ENST00000301897 SPATA31A6Q5VVP1 1343 aa22.67■■□□□ 1.22
CCDC88B-201ENST00000301897 SIPA1L2Q9P2F8 1722 aaPredicted RBP22.66■■□□□ 1.22
CCDC88B-201ENST00000301897 AHDC1Q5TGY3 1603 aaPredicted RBP22.64■■□□□ 1.22
CCDC88B-201ENST00000301897 NUTM2DQ5VT03 806 aaPredicted RBP22.63■■□□□ 1.21
CCDC88B-201ENST00000301897 DCCP43146 1447 aa22.62■■□□□ 1.21
CCDC88B-201ENST00000301897 AMOTL2Q9Y2J4 779 aa22.61■■□□□ 1.21
CCDC88B-201ENST00000301897 MEX3CQ5U5Q3 659 aaKnown RBP22.6■■□□□ 1.21
CCDC88B-201ENST00000301897 SHPRHQ149N8 1683 aa22.6■■□□□ 1.21
CCDC88B-201ENST00000301897 ZNF772Q68DY9 489 aaPredicted RBP22.59■■□□□ 1.21
CCDC88B-201ENST00000301897 SPHKAPQ2M3C7 1700 aa22.57■■□□□ 1.2
CCDC88B-201ENST00000301897 SETBP1Q9Y6X0 1596 aa22.57■■□□□ 1.2
CCDC88B-201ENST00000301897 LRP6O75581 1613 aa22.56■■□□□ 1.2
CCDC88B-201ENST00000301897 PTPRUQ92729 1446 aa22.56■■□□□ 1.2
CCDC88B-201ENST00000301897 XRN1Q8IZH2 1706 aaKnown RBP22.54■■□□□ 1.2
CCDC88B-201ENST00000301897 ITGAEP38570 1179 aa22.54■■□□□ 1.2
CCDC88B-201ENST00000301897 BRINP3Q76B58 766 aa22.54■■□□□ 1.2
CCDC88B-201ENST00000301897 SETD1AO15047 1707 aaKnown RBP22.54■■□□□ 1.2
CCDC88B-201ENST00000301897 ZNF326Q5BKZ1 582 aaKnown RBP22.53■■□□□ 1.2
CCDC88B-201ENST00000301897 NRXN3Q9Y4C0 1643 aa22.53■■□□□ 1.2
CCDC88B-201ENST00000301897 ASXL1Q8IXJ9 1541 aa22.5■■□□□ 1.19
CCDC88B-201ENST00000301897 SETD5Q9C0A6 1442 aa22.48■■□□□ 1.19
CCDC88B-201ENST00000301897 MST1RQ04912 1400 aa22.48■■□□□ 1.19
CCDC88B-201ENST00000301897 NHSL1Q5SYE7 1610 aa22.46■■□□□ 1.19
CCDC88B-201ENST00000301897 LRRC59Q96AG4 307 aaKnown RBP22.46■■□□□ 1.19
CCDC88B-201ENST00000301897 METP08581 1390 aa22.46■■□□□ 1.19
CCDC88B-201ENST00000301897 ADGRL3Q9HAR2 1447 aa22.46■■□□□ 1.19
CCDC88B-201ENST00000301897 RXRBP28702 533 aa22.45■■□□□ 1.18
CCDC88B-201ENST00000301897 CDK12Q9NYV4 1490 aaPredicted RBP22.45■■□□□ 1.18
CCDC88B-201ENST00000301897 NUTM2BA6NNL0 878 aaPredicted RBP22.44■■□□□ 1.18
CCDC88B-201ENST00000301897 NUTM2EB1AL46 878 aaPredicted RBP22.44■■□□□ 1.18
CCDC88B-201ENST00000301897 NUTM2AQ8IVF1 878 aaPredicted RBP22.44■■□□□ 1.18
CCDC88B-201ENST00000301897 KIF1BO60333 1816 aa22.43■■□□□ 1.18
CCDC88B-201ENST00000301897 NEXMIFQ5QGS0 1516 aa22.43■■□□□ 1.18
CCDC88B-201ENST00000301897 TRIM52Q96A61 297 aa22.43■■□□□ 1.18
CCDC88B-201ENST00000301897 CLTCL1P53675 1640 aa22.42■■□□□ 1.18
CCDC88B-201ENST00000301897 UPF1Q92900 1129 aaKnown RBP eCLIP22.41■■□□□ 1.18
CCDC88B-201ENST00000301897 AFF2P51816 1311 aa22.39■■□□□ 1.18
CCDC88B-201ENST00000301897 VGFO15240 615 aaPredicted RBP22.39■■□□□ 1.17
CCDC88B-201ENST00000301897 NALCNQ8IZF0 1738 aa22.38■■□□□ 1.17
CCDC88B-201ENST00000301897 PTCH1Q13635 1447 aa22.38■■□□□ 1.17
CCDC88B-201ENST00000301897 RRBP1Q9P2E9 1410 aaKnown RBP22.36■■□□□ 1.17
CCDC88B-201ENST00000301897 PNPLA6Q8IY17 1366 aa22.36■■□□□ 1.17
CCDC88B-201ENST00000301897 NAIPQ13075 1403 aa22.35■■□□□ 1.17
CCDC88B-201ENST00000301897 PPARGC1BQ86YN6 1023 aaKnown RBP22.35■■□□□ 1.17
CCDC88B-201ENST00000301897 C1orf167Q5SNV9 1468 aa22.34■■□□□ 1.17
CCDC88B-201ENST00000301897 RPGRIP1LQ68CZ1 1315 aa22.34■■□□□ 1.17
CCDC88B-201ENST00000301897 LAMC1P11047 1609 aa22.33■■□□□ 1.17
CCDC88B-201ENST00000301897 PRAG1Q86YV5 1406 aa22.32■■□□□ 1.16
CCDC88B-201ENST00000301897 C8orf37Q96NL8 207 aa22.32■■□□□ 1.16
CCDC88B-201ENST00000301897 RBM6P78332 1123 aaKnown RBP22.31■■□□□ 1.16
CCDC88B-201ENST00000301897 QTRT2Q9H974 415 aaKnown RBP22.31■■□□□ 1.16
CCDC88B-201ENST00000301897 DDX17Q92841 729 aaKnown RBP22.3■■□□□ 1.16
CCDC88B-201ENST00000301897 HFM1A2PYH4 1435 aa22.29■■□□□ 1.16
CCDC88B-201ENST00000301897 ROBO2Q9HCK4 1378 aa22.28■■□□□ 1.16
CCDC88B-201ENST00000301897 NGLY1Q96IV0 654 aa22.27■■□□□ 1.16
CCDC88B-201ENST00000301897 SOS2Q07890 1332 aaPredicted RBP22.27■■□□□ 1.16
CCDC88B-201ENST00000301897 SLC4A1APQ9BWU0 796 aaKnown RBP22.25■■□□□ 1.15
CCDC88B-201ENST00000301897 PPLO60437 1756 aa22.25■■□□□ 1.15
CCDC88B-201ENST00000301897 RGS12O14924 1447 aa22.24■■□□□ 1.15
CCDC88B-201ENST00000301897 ADAMTS2O95450 1211 aa22.23■■□□□ 1.15
CCDC88B-201ENST00000301897 ORAI2Q96SN7 254 aa22.23■■□□□ 1.15
CCDC88B-201ENST00000301897 NPHP3Q7Z494 1330 aa22.2■■□□□ 1.14
CCDC88B-201ENST00000301897 CDC42BPGQ6DT37 1551 aa22.2■■□□□ 1.14
CCDC88B-201ENST00000301897 TRPC5Q9UL62 973 aaPredicted RBP22.19■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 84.2 ms