RNA–Protein interactions for RNA: ENST00000292476.9

CPSF4-201, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CPSF4, Length 1,691 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-201ENST00000292476 PRAG1Q86YV5 1406 aa23.42■■□□□ 1.34
CPSF4-201ENST00000292476 HSPA5P11021 654 aaKnown RBP23.41■■□□□ 1.34
CPSF4-201ENST00000292476 KIF1BO60333 1816 aa23.4■■□□□ 1.34
CPSF4-201ENST00000292476 CCER2I3L3R5 266 aa23.39■■□□□ 1.34
CPSF4-201ENST00000292476 SLC52A1Q9NWF4 448 aa23.39■■□□□ 1.34
CPSF4-201ENST00000292476 UGGT1Q9NYU2 1555 aa23.39■■□□□ 1.34
CPSF4-201ENST00000292476 DDX10Q13206 875 aaKnown RBP23.38■■□□□ 1.33
CPSF4-201ENST00000292476 SYNMO15061 1565 aa23.37■■□□□ 1.33
CPSF4-201ENST00000292476 NCKAP5LQ9HCH0 1330 aa23.36■■□□□ 1.33
CPSF4-201ENST00000292476 CARD11Q9BXL7 1154 aa23.35■■□□□ 1.33
CPSF4-201ENST00000292476 RPGRIP1LQ68CZ1 1315 aa23.35■■□□□ 1.33
CPSF4-201ENST00000292476 ROCK2O75116 1388 aaKnown RBP23.35■■□□□ 1.33
CPSF4-201ENST00000292476 PIK3C2BO00750 1634 aa23.33■■□□□ 1.33
CPSF4-201ENST00000292476 UBR1Q8IWV7 1749 aa23.33■■□□□ 1.33
CPSF4-201ENST00000292476 THEMISQ8N1K5 641 aaPredicted RBP23.33■■□□□ 1.33
CPSF4-201ENST00000292476 ADGRB3O60242 1522 aa23.32■■□□□ 1.32
CPSF4-201ENST00000292476 HIRIP3Q9BW71 556 aaPredicted RBP23.32■■□□□ 1.32
CPSF4-201ENST00000292476 USP47Q96K76 1375 aa23.32■■□□□ 1.32
CPSF4-201ENST00000292476 TRPM1Q7Z4N2 1603 aa23.32■■□□□ 1.32
CPSF4-201ENST00000292476 MYOM2P54296 1465 aa23.31■■□□□ 1.32
CPSF4-201ENST00000292476 IDI1Q13907 227 aa23.31■■□□□ 1.32
CPSF4-201ENST00000292476 DMRT2Q9Y5R5 561 aa23.31■■□□□ 1.32
CPSF4-201ENST00000292476 GPRASP1Q5JY77 1395 aa23.31■■□□□ 1.32
CPSF4-201ENST00000292476 ANP32CO43423 234 aa23.29■■□□□ 1.32
CPSF4-201ENST00000292476 LAMC1P11047 1609 aa23.29■■□□□ 1.32
CPSF4-201ENST00000292476 CHGAP10645 457 aaKnown RBP23.28■■□□□ 1.32
CPSF4-201ENST00000292476 STAG3Q9UJ98 1225 aa23.28■■□□□ 1.32
CPSF4-201ENST00000292476 POLR1AO95602 1720 aaPredicted RBP23.28■■□□□ 1.32
CPSF4-201ENST00000292476 ANKLE2Q86XL3 938 aa23.25■■□□□ 1.31
CPSF4-201ENST00000292476 IFT172Q9UG01 1749 aa23.23■■□□□ 1.31
CPSF4-201ENST00000292476 KIAA1210Q9ULL0 1709 aa23.23■■□□□ 1.31
CPSF4-201ENST00000292476 MYO5BQ9ULV0 1848 aa23.21■■□□□ 1.31
CPSF4-201ENST00000292476 KDM5AP29375 1690 aaKnown RBP23.21■■□□□ 1.31
CPSF4-201ENST00000292476 VGFO15240 615 aaPredicted RBP23.21■■□□□ 1.31
CPSF4-201ENST00000292476 NRXN1Q9ULB1 1477 aa23.2■■□□□ 1.3
CPSF4-201ENST00000292476 NBPF1Q3BBV0 1214 aa23.19■■□□□ 1.3
CPSF4-201ENST00000292476 SLIT1O75093 1534 aa23.19■■□□□ 1.3
CPSF4-201ENST00000292476 WASHC2AQ641Q2 1341 aa23.19■■□□□ 1.3
CPSF4-201ENST00000292476 ARHGAP23Q9P227 1491 aa23.19■■□□□ 1.3
CPSF4-201ENST00000292476 SUPT16HQ9Y5B9 1047 aaKnown RBP23.19■■□□□ 1.3
CPSF4-201ENST00000292476 TMEM2Q9UHN6 1383 aa23.18■■□□□ 1.3
CPSF4-201ENST00000292476 CCDC7Q96M83 1385 aa23.17■■□□□ 1.3
CPSF4-201ENST00000292476 LTKP29376 864 aa23.17■■□□□ 1.3
CPSF4-201ENST00000292476 TXNDC2Q86VQ3 553 aa23.17■■□□□ 1.3
CPSF4-201ENST00000292476 SCAF11Q99590 1463 aaKnown RBP23.17■■□□□ 1.3
CPSF4-201ENST00000292476 TMEM131LA2VDJ0 1609 aa23.17■■□□□ 1.3
CPSF4-201ENST00000292476 PPLO60437 1756 aa23.17■■□□□ 1.3
CPSF4-201ENST00000292476 NPHP4O75161 1426 aaPredicted RBP23.16■■□□□ 1.3
CPSF4-201ENST00000292476 ZFYVE9O95405 1425 aa23.16■■□□□ 1.3
CPSF4-201ENST00000292476 IQGAP1P46940 1657 aa23.15■■□□□ 1.3
CPSF4-201ENST00000292476 ST20-MTHFSA0A0A6YYL1 179 aa23.15■■□□□ 1.3
CPSF4-201ENST00000292476 SLC24A1O60721 1099 aa23.15■■□□□ 1.3
CPSF4-201ENST00000292476 MED14O60244 1454 aa23.15■■□□□ 1.3
CPSF4-201ENST00000292476 ADGRF5Q8IZF2 1346 aa23.15■■□□□ 1.3
CPSF4-201ENST00000292476 EID1Q9Y6B2 187 aa23.14■■□□□ 1.29
CPSF4-201ENST00000292476 EIF3AQ14152 1382 aaKnown RBP23.13■■□□□ 1.29
CPSF4-201ENST00000292476 ZNF335Q9H4Z2 1342 aaPredicted RBP23.12■■□□□ 1.29
CPSF4-201ENST00000292476 KIF7Q2M1P5 1343 aa23.12■■□□□ 1.29
CPSF4-201ENST00000292476 PIK3C2GO75747 1445 aa23.12■■□□□ 1.29
CPSF4-201ENST00000292476 NEXMIFQ5QGS0 1516 aa23.11■■□□□ 1.29
CPSF4-201ENST00000292476 SETBP1Q9Y6X0 1596 aa23.1■■□□□ 1.29
CPSF4-201ENST00000292476 SENP3Q9H4L4 574 aaPredicted RBP23.09■■□□□ 1.29
CPSF4-201ENST00000292476 C11orf95C9JLR9 678 aaPredicted RBP23.09■■□□□ 1.29
CPSF4-201ENST00000292476 C14orf93Q9H972 538 aaKnown RBP23.09■■□□□ 1.29
CPSF4-201ENST00000292476 RIMS2Q9UQ26 1411 aa23.08■■□□□ 1.29
CPSF4-201ENST00000292476 HDGFP51858 240 aaKnown RBP23.08■■□□□ 1.29
CPSF4-201ENST00000292476 CFAP70Q5T0N1 1121 aa23.08■■□□□ 1.29
CPSF4-201ENST00000292476 LTBP4Q8N2S1 1624 aa23.08■■□□□ 1.28
CPSF4-201ENST00000292476 NUTM2DQ5VT03 806 aaPredicted RBP23.07■■□□□ 1.28
CPSF4-201ENST00000292476 CERKQ8TCT0 537 aa23.06■■□□□ 1.28
CPSF4-201ENST00000292476 TMF1P82094 1093 aa23.05■■□□□ 1.28
CPSF4-201ENST00000292476 ABCF1Q8NE71 845 aaKnown RBP eCLIP23.05■■□□□ 1.28
CPSF4-201ENST00000292476 CDCA8Q53HL2 280 aa23.03■■□□□ 1.28
CPSF4-201ENST00000292476 BCANQ96GW7 911 aa23.03■■□□□ 1.28
CPSF4-201ENST00000292476 TESK2Q96S53 571 aa23■■□□□ 1.27
CPSF4-201ENST00000292476 SLC26A8Q96RN1 970 aa23■■□□□ 1.27
CPSF4-201ENST00000292476 PLEKHG1Q9ULL1 1385 aa22.97■■□□□ 1.27
CPSF4-201ENST00000292476 STRCP1A6NGW2 1772 aa22.97■■□□□ 1.27
CPSF4-201ENST00000292476 POLR3GLQ9BT43 218 aa22.96■■□□□ 1.27
CPSF4-201ENST00000292476 ADGRB1O14514 1584 aa22.95■■□□□ 1.27
CPSF4-201ENST00000292476 SBNO2Q9Y2G9 1366 aa22.94■■□□□ 1.26
CPSF4-201ENST00000292476 ILDR1Q86SU0 546 aaPredicted RBP22.93■■□□□ 1.26
CPSF4-201ENST00000292476 CPS1P31327 1500 aa22.93■■□□□ 1.26
CPSF4-201ENST00000292476 FBXO41Q8TF61 875 aa22.91■■□□□ 1.26
CPSF4-201ENST00000292476 CENPJQ9HC77 1338 aaPredicted RBP22.9■■□□□ 1.26
CPSF4-201ENST00000292476 ADAMTS13Q76LX8 1427 aa22.89■■□□□ 1.25
CPSF4-201ENST00000292476 DISP3Q9P2K9 1392 aa22.89■■□□□ 1.25
CPSF4-201ENST00000292476 NEFLP07196 543 aa22.89■■□□□ 1.25
CPSF4-201ENST00000292476 TRAK1Q9UPV9 953 aa22.88■■□□□ 1.25
CPSF4-201ENST00000292476 TMEM132EQ6IEE7 984 aa22.87■■□□□ 1.25
CPSF4-201ENST00000292476 ALKQ9UM73 1620 aa22.87■■□□□ 1.25
CPSF4-201ENST00000292476 NRXN3Q9Y4C0 1643 aa22.87■■□□□ 1.25
CPSF4-201ENST00000292476 IQSEC2Q5JU85 1478 aa22.86■■□□□ 1.25
CPSF4-201ENST00000292476 TBX22Q9Y458 520 aa22.85■■□□□ 1.25
CPSF4-201ENST00000292476 LRRC7Q96NW7 1537 aa22.85■■□□□ 1.25
CPSF4-201ENST00000292476 DIP2AQ14689 1571 aa22.84■■□□□ 1.25
CPSF4-201ENST00000292476 KCNA6P17658 529 aa22.84■■□□□ 1.25
CPSF4-201ENST00000292476 PRKRIP1Q9H875 184 aaPredicted RBP22.84■■□□□ 1.25
CPSF4-201ENST00000292476 CHD2O14647 1828 aaKnown RBP22.83■■□□□ 1.25
CPSF4-201ENST00000292476 NWD1Q149M9 1564 aa22.82■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms