RNA–Protein interactions for RNA: ENST00000284770.9

PDLIM3-202, Transcript of PDZ and LIM domain 3, humanhuman

TSL 1 (best) BASIC

Gene PDLIM3, Length 1,766 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-202ENST00000284770 MYO3AQ8NEV4 1616 aa26.91■■□□□ 1.9
PDLIM3-202ENST00000284770 UBR1Q8IWV7 1749 aa26.9■■□□□ 1.9
PDLIM3-202ENST00000284770 VGFO15240 615 aaPredicted RBP26.9■■□□□ 1.9
PDLIM3-202ENST00000284770 ADGRF5Q8IZF2 1346 aa26.89■■□□□ 1.9
PDLIM3-202ENST00000284770 NRXN1Q9ULB1 1477 aa26.89■■□□□ 1.9
PDLIM3-202ENST00000284770 ZFYVE9O95405 1425 aa26.88■■□□□ 1.89
PDLIM3-202ENST00000284770 SETD1BQ9UPS6 1966 aaKnown RBP26.87■■□□□ 1.89
PDLIM3-202ENST00000284770 RALGAPBQ86X10 1494 aa26.87■■□□□ 1.89
PDLIM3-202ENST00000284770 RIMS2Q9UQ26 1411 aa26.85■■□□□ 1.89
PDLIM3-202ENST00000284770 NUTM2DQ5VT03 806 aaPredicted RBP26.85■■□□□ 1.89
PDLIM3-202ENST00000284770 THEMISQ8N1K5 641 aaPredicted RBP26.84■■□□□ 1.89
PDLIM3-202ENST00000284770 TMEM2Q9UHN6 1383 aa26.84■■□□□ 1.89
PDLIM3-202ENST00000284770 CEP170BQ9Y4F5 1589 aaPredicted RBP26.84■■□□□ 1.89
PDLIM3-202ENST00000284770 TRPM1Q7Z4N2 1603 aa26.83■■□□□ 1.89
PDLIM3-202ENST00000284770 HDGFP51858 240 aaKnown RBP26.83■■□□□ 1.89
PDLIM3-202ENST00000284770 ABCF1Q8NE71 845 aaKnown RBP eCLIP26.83■■□□□ 1.89
PDLIM3-202ENST00000284770 PIK3C2GO75747 1445 aa26.82■■□□□ 1.88
PDLIM3-202ENST00000284770 ROCK2O75116 1388 aaKnown RBP26.8■■□□□ 1.88
PDLIM3-202ENST00000284770 ZNF316A6NFI3 1004 aaPredicted RBP26.8■■□□□ 1.88
PDLIM3-202ENST00000284770 ZNF142P52746 1687 aaPredicted RBP26.8■■□□□ 1.88
PDLIM3-202ENST00000284770 NBPF1Q3BBV0 1214 aa26.79■■□□□ 1.88
PDLIM3-202ENST00000284770 SLIT1O75093 1534 aa26.78■■□□□ 1.88
PDLIM3-202ENST00000284770 GPRASP1Q5JY77 1395 aa26.78■■□□□ 1.88
PDLIM3-202ENST00000284770 ARHGAP23Q9P227 1491 aa26.77■■□□□ 1.88
PDLIM3-202ENST00000284770 CFAP70Q5T0N1 1121 aa26.76■■□□□ 1.88
PDLIM3-202ENST00000284770 CARD11Q9BXL7 1154 aa26.76■■□□□ 1.88
PDLIM3-202ENST00000284770 KIAA1210Q9ULL0 1709 aa26.76■■□□□ 1.88
PDLIM3-202ENST00000284770 C14orf93Q9H972 538 aaKnown RBP26.76■■□□□ 1.87
PDLIM3-202ENST00000284770 EID1Q9Y6B2 187 aa26.74■■□□□ 1.87
PDLIM3-202ENST00000284770 EIF4G2P78344 907 aaKnown RBP eCLIP26.73■■□□□ 1.87
PDLIM3-202ENST00000284770 LTKP29376 864 aa26.72■■□□□ 1.87
PDLIM3-202ENST00000284770 TXNDC2Q86VQ3 553 aa26.72■■□□□ 1.87
PDLIM3-202ENST00000284770 LAMC1P11047 1609 aa26.7■■□□□ 1.86
PDLIM3-202ENST00000284770 HSPA5P11021 654 aaKnown RBP26.68■■□□□ 1.86
PDLIM3-202ENST00000284770 USP47Q96K76 1375 aa26.68■■□□□ 1.86
PDLIM3-202ENST00000284770 SETBP1Q9Y6X0 1596 aa26.67■■□□□ 1.86
PDLIM3-202ENST00000284770 SENP3Q9H4L4 574 aaPredicted RBP26.66■■□□□ 1.86
PDLIM3-202ENST00000284770 PLEKHG1Q9ULL1 1385 aa26.66■■□□□ 1.86
PDLIM3-202ENST00000284770 SCAF11Q99590 1463 aaKnown RBP26.65■■□□□ 1.86
PDLIM3-202ENST00000284770 HIRIP3Q9BW71 556 aaPredicted RBP26.64■■□□□ 1.86
PDLIM3-202ENST00000284770 ALKQ9UM73 1620 aa26.64■■□□□ 1.86
PDLIM3-202ENST00000284770 ADGRB1O14514 1584 aa26.64■■□□□ 1.85
PDLIM3-202ENST00000284770 ANKLE2Q86XL3 938 aa26.63■■□□□ 1.85
PDLIM3-202ENST00000284770 NRXN3Q9Y4C0 1643 aa26.62■■□□□ 1.85
PDLIM3-202ENST00000284770 TMEM132EQ6IEE7 984 aa26.61■■□□□ 1.85
PDLIM3-202ENST00000284770 BCANQ96GW7 911 aa26.61■■□□□ 1.85
PDLIM3-202ENST00000284770 IQGAP1P46940 1657 aa26.58■■□□□ 1.85
PDLIM3-202ENST00000284770 ST20-MTHFSA0A0A6YYL1 179 aa26.57■■□□□ 1.84
PDLIM3-202ENST00000284770 ADAMTS13Q76LX8 1427 aa26.57■■□□□ 1.84
PDLIM3-202ENST00000284770 ASXL1Q8IXJ9 1541 aa26.57■■□□□ 1.84
PDLIM3-202ENST00000284770 SETD1AO15047 1707 aaKnown RBP26.56■■□□□ 1.84
PDLIM3-202ENST00000284770 MED14O60244 1454 aa26.54■■□□□ 1.84
PDLIM3-202ENST00000284770 LMTK3Q96Q04 1460 aa26.54■■□□□ 1.84
PDLIM3-202ENST00000284770 EIF3AQ14152 1382 aaKnown RBP26.54■■□□□ 1.84
PDLIM3-202ENST00000284770 TBX22Q9Y458 520 aa26.53■■□□□ 1.84
PDLIM3-202ENST00000284770 METP08581 1390 aa26.52■■□□□ 1.84
PDLIM3-202ENST00000284770 TRAK1Q9UPV9 953 aa26.52■■□□□ 1.84
PDLIM3-202ENST00000284770 YTHDC2Q9H6S0 1430 aaKnown RBP26.52■■□□□ 1.84
PDLIM3-202ENST00000284770 SLC26A8Q96RN1 970 aa26.51■■□□□ 1.83
PDLIM3-202ENST00000284770 NCKAP5LQ9HCH0 1330 aa26.49■■□□□ 1.83
PDLIM3-202ENST00000284770 DIP2AQ14689 1571 aa26.49■■□□□ 1.83
PDLIM3-202ENST00000284770 HSPA2P54652 639 aa26.48■■□□□ 1.83
PDLIM3-202ENST00000284770 LRPPRCP42704 1394 aaKnown RBP26.48■■□□□ 1.83
PDLIM3-202ENST00000284770 POLR1AO95602 1720 aaPredicted RBP26.48■■□□□ 1.83
PDLIM3-202ENST00000284770 STK26Q9P289 416 aa26.48■■□□□ 1.83
PDLIM3-202ENST00000284770 NPHP4O75161 1426 aaPredicted RBP26.47■■□□□ 1.83
PDLIM3-202ENST00000284770 TESK2Q96S53 571 aa26.46■■□□□ 1.83
PDLIM3-202ENST00000284770 ABCC11Q96J66 1382 aa26.45■■□□□ 1.82
PDLIM3-202ENST00000284770 DIEXFQ68CQ4 756 aaKnown RBP26.45■■□□□ 1.82
PDLIM3-202ENST00000284770 CENPJQ9HC77 1338 aaPredicted RBP26.43■■□□□ 1.82
PDLIM3-202ENST00000284770 C11orf95C9JLR9 678 aaPredicted RBP26.43■■□□□ 1.82
PDLIM3-202ENST00000284770 ARHGEF28Q8N1W1 1705 aaKnown RBP26.41■■□□□ 1.82
PDLIM3-202ENST00000284770 PIK3R4Q99570 1358 aa26.41■■□□□ 1.82
PDLIM3-202ENST00000284770 DLC1Q96QB1 1528 aa26.41■■□□□ 1.82
PDLIM3-202ENST00000284770 TECPR2O15040 1411 aa26.4■■□□□ 1.82
PDLIM3-202ENST00000284770 SLC24A1O60721 1099 aa26.4■■□□□ 1.82
PDLIM3-202ENST00000284770 WASHC2AQ641Q2 1341 aa26.4■■□□□ 1.82
PDLIM3-202ENST00000284770 SBNO2Q9Y2G9 1366 aa26.39■■□□□ 1.82
PDLIM3-202ENST00000284770 SIRT1Q96EB6 747 aa26.38■■□□□ 1.81
PDLIM3-202ENST00000284770 PTPRUQ92729 1446 aa26.38■■□□□ 1.81
PDLIM3-202ENST00000284770 TMF1P82094 1093 aa26.37■■□□□ 1.81
PDLIM3-202ENST00000284770 PRAM1Q96QH2 718 aa26.37■■□□□ 1.81
PDLIM3-202ENST00000284770 CCDC7Q96M83 1385 aa26.36■■□□□ 1.81
PDLIM3-202ENST00000284770 KIF7Q2M1P5 1343 aa26.36■■□□□ 1.81
PDLIM3-202ENST00000284770 AMOTL2Q9Y2J4 779 aa26.36■■□□□ 1.81
PDLIM3-202ENST00000284770 KNDC1Q76NI1 1749 aa26.36■■□□□ 1.81
PDLIM3-202ENST00000284770 POGKQ9P215 609 aa26.35■■□□□ 1.81
PDLIM3-202ENST00000284770 FAM135BQ49AJ0 1406 aa26.34■■□□□ 1.81
PDLIM3-202ENST00000284770 CPS1P31327 1500 aa26.34■■□□□ 1.81
PDLIM3-202ENST00000284770 QRICH2Q9H0J4 1663 aa26.33■■□□□ 1.81
PDLIM3-202ENST00000284770 DISP3Q9P2K9 1392 aa26.33■■□□□ 1.81
PDLIM3-202ENST00000284770 WAPLQ7Z5K2 1190 aa26.32■■□□□ 1.8
PDLIM3-202ENST00000284770 SAFB2Q14151 953 aaKnown RBP eCLIP26.31■■□□□ 1.8
PDLIM3-202ENST00000284770 ROBO2Q9HCK4 1378 aa26.31■■□□□ 1.8
PDLIM3-202ENST00000284770 STRCQ7RTU9 1775 aa26.31■■□□□ 1.8
PDLIM3-202ENST00000284770 PLEKHH1Q9ULM0 1364 aa26.3■■□□□ 1.8
PDLIM3-202ENST00000284770 XRN1Q8IZH2 1706 aaKnown RBP26.29■■□□□ 1.8
PDLIM3-202ENST00000284770 PTCH1Q13635 1447 aa26.29■■□□□ 1.8
PDLIM3-202ENST00000284770 CDCA8Q53HL2 280 aa26.28■■□□□ 1.8
PDLIM3-202ENST00000284770 CHD2O14647 1828 aaKnown RBP26.28■■□□□ 1.8
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms