RNA–Protein interactions for RNA: ENST00000277817.10

HERC4-201, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 1 (best) BASIC

Gene HERC4, Length 4,371 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-201ENST00000277817 ABCB7O75027 752 aa4.37□□□□□ -1.71
HERC4-201ENST00000277817 ILDR1Q86SU0 546 aaPredicted RBP4.37□□□□□ -1.71
HERC4-201ENST00000277817 CROCC2H7BZ55 1655 aa4.37□□□□□ -1.71
HERC4-201ENST00000277817 HECW1Q76N89 1606 aa4.37□□□□□ -1.71
HERC4-201ENST00000277817 MADDQ8WXG6 1647 aa4.37□□□□□ -1.71
HERC4-201ENST00000277817 MINK1Q8N4C8 1332 aaPredicted RBP4.37□□□□□ -1.71
HERC4-201ENST00000277817 KDM5DQ9BY66 1539 aa4.37□□□□□ -1.71
HERC4-201ENST00000277817 TMCO4Q5TGY1 634 aa4.37□□□□□ -1.71
HERC4-201ENST00000277817 SMYD5Q6GMV2 418 aa4.36□□□□□ -1.71
HERC4-201ENST00000277817 PRAG1Q86YV5 1406 aa4.36□□□□□ -1.71
HERC4-201ENST00000277817 NWD1Q149M9 1564 aa4.36□□□□□ -1.71
HERC4-201ENST00000277817 KIDINS220Q9ULH0 1771 aa4.36□□□□□ -1.71
HERC4-201ENST00000277817 TBC1D12O60347 775 aa4.36□□□□□ -1.71
HERC4-201ENST00000277817 PPP1R15AO75807 674 aaPredicted RBP4.36□□□□□ -1.71
HERC4-201ENST00000277817 SH3D19Q5HYK7 790 aa4.36□□□□□ -1.71
HERC4-201ENST00000277817 GZF1Q9H116 711 aaPredicted RBP4.36□□□□□ -1.71
HERC4-201ENST00000277817 MS4A1P11836 297 aa4.36□□□□□ -1.71
HERC4-201ENST00000277817 WDR70Q9NW82 654 aa4.36□□□□□ -1.71
HERC4-201ENST00000277817 GNL3Q9BVP2 549 aaKnown RBP eCLIP4.35□□□□□ -1.71
HERC4-201ENST00000277817 MYO3AQ8NEV4 1616 aa4.35□□□□□ -1.71
HERC4-201ENST00000277817 DIP2CQ9Y2E4 1556 aa4.35□□□□□ -1.71
HERC4-201ENST00000277817 GPIHBP1Q8IV16 184 aa4.35□□□□□ -1.71
HERC4-201ENST00000277817 FAM177A1Q8N128 213 aaPredicted RBP4.35□□□□□ -1.71
HERC4-201ENST00000277817 KIAA1522Q9P206 1035 aaPredicted RBP4.35□□□□□ -1.71
HERC4-201ENST00000277817 ABCA6Q8N139 1617 aa4.35□□□□□ -1.71
HERC4-201ENST00000277817 BRD1O95696 1058 aa4.35□□□□□ -1.71
HERC4-201ENST00000277817 MS4A4AQ96JQ5 239 aa4.35□□□□□ -1.71
HERC4-201ENST00000277817 REPIN1Q9BWE0 567 aaKnown RBP4.35□□□□□ -1.71
HERC4-201ENST00000277817 RNF39Q9H2S5 420 aa4.35□□□□□ -1.71
HERC4-201ENST00000277817 COG6Q9Y2V7 657 aa4.35□□□□□ -1.71
HERC4-201ENST00000277817 ZC3H4Q9UPT8 1303 aaKnown RBP4.35□□□□□ -1.71
HERC4-201ENST00000277817 IRF6O14896 467 aa4.35□□□□□ -1.71
HERC4-201ENST00000277817 MAP2K5Q13163 448 aa4.35□□□□□ -1.71
HERC4-201ENST00000277817 GNEQ9Y223 722 aaKnown RBP4.35□□□□□ -1.71
HERC4-201ENST00000277817 COL24A1Q17RW2 1714 aa4.34□□□□□ -1.71
HERC4-201ENST00000277817 HMGB1P09429 215 aaKnown RBP4.34□□□□□ -1.71
HERC4-201ENST00000277817 DNAJC14Q6Y2X3 702 aaPredicted RBP4.34□□□□□ -1.71
HERC4-201ENST00000277817 RIMS1Q86UR5 1692 aaKnown RBP4.33□□□□□ -1.72
HERC4-201ENST00000277817 PDIA6Q15084 440 aa4.33□□□□□ -1.72
HERC4-201ENST00000277817 RSPH4AQ5TD94 716 aa4.33□□□□□ -1.72
HERC4-201ENST00000277817 EEA1Q15075 1411 aa4.33□□□□□ -1.72
HERC4-201ENST00000277817 GPR37L1O60883 481 aa4.33□□□□□ -1.72
HERC4-201ENST00000277817 VWDEQ8N2E2 1590 aa4.33□□□□□ -1.72
HERC4-201ENST00000277817 CEP170BQ9Y4F5 1589 aaPredicted RBP4.33□□□□□ -1.72
HERC4-201ENST00000277817 TSPOAP1O95153 1857 aa4.33□□□□□ -1.72
HERC4-201ENST00000277817 TMEM88BA6NKF7 163 aa4.33□□□□□ -1.72
HERC4-201ENST00000277817 IGF1RP08069 1367 aa4.33□□□□□ -1.72
HERC4-201ENST00000277817 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP4.32□□□□□ -1.72
HERC4-201ENST00000277817 PLA2R1Q13018 1463 aa4.32□□□□□ -1.72
HERC4-201ENST00000277817 STRCP1A6NGW2 1772 aa4.32□□□□□ -1.72
HERC4-201ENST00000277817 PATL2C9JE40 543 aaKnown RBP4.32□□□□□ -1.72
HERC4-201ENST00000277817 GOLGA3Q08378 1498 aa4.32□□□□□ -1.72
HERC4-201ENST00000277817 NCOA2Q15596 1464 aa4.32□□□□□ -1.72
HERC4-201ENST00000277817 E9PSI1 815 aa4.32□□□□□ -1.72
HERC4-201ENST00000277817 CCDC102AQ96A19 550 aa4.32□□□□□ -1.72
HERC4-201ENST00000277817 PTPRTO14522 1441 aa4.32□□□□□ -1.72
HERC4-201ENST00000277817 UACAQ9BZF9 1416 aa4.32□□□□□ -1.72
HERC4-201ENST00000277817 C8orf37Q96NL8 207 aa4.32□□□□□ -1.72
HERC4-201ENST00000277817 USTQ9Y2C2 406 aa4.32□□□□□ -1.72
HERC4-201ENST00000277817 ABCC1P33527 1531 aa4.32□□□□□ -1.72
HERC4-201ENST00000277817 PRG4Q92954 1404 aaPredicted RBP4.31□□□□□ -1.72
HERC4-201ENST00000277817 VAMP1P23763 118 aa4.31□□□□□ -1.72
HERC4-201ENST00000277817 CDK11AQ9UQ88 783 aaPredicted RBP4.31□□□□□ -1.72
HERC4-201ENST00000277817 TNIKQ9UKE5 1360 aa4.31□□□□□ -1.72
HERC4-201ENST00000277817 RBM25P49756 843 aaKnown RBP4.31□□□□□ -1.72
HERC4-201ENST00000277817 SND1Q7KZF4 910 aaKnown RBP eCLIP4.3□□□□□ -1.72
HERC4-201ENST00000277817 MED14O60244 1454 aa4.3□□□□□ -1.72
HERC4-201ENST00000277817 ASXL2Q76L83 1435 aa4.3□□□□□ -1.72
HERC4-201ENST00000277817 ZNF777Q9ULD5 760 aaPredicted RBP4.3□□□□□ -1.72
HERC4-201ENST00000277817 TMEM131LA2VDJ0 1609 aa4.3□□□□□ -1.72
HERC4-201ENST00000277817 SPDYE5A6NIY4 337 aa4.3□□□□□ -1.72
HERC4-201ENST00000277817 PPARGC1BQ86YN6 1023 aaKnown RBP4.3□□□□□ -1.72
HERC4-201ENST00000277817 PIK3C2BO00750 1634 aa4.3□□□□□ -1.72
HERC4-201ENST00000277817 C7P10643 843 aa4.3□□□□□ -1.72
HERC4-201ENST00000277817 CFAP70Q5T0N1 1121 aa4.3□□□□□ -1.72
HERC4-201ENST00000277817 BANK1Q8NDB2 785 aa4.3□□□□□ -1.72
HERC4-201ENST00000277817 UGGT1Q9NYU2 1555 aa4.29□□□□□ -1.72
HERC4-201ENST00000277817 EMILIN3Q9NT22 766 aa4.29□□□□□ -1.72
HERC4-201ENST00000277817 MLH3Q9UHC1 1453 aa4.29□□□□□ -1.72
HERC4-201ENST00000277817 ARHGEF5Q12774 1597 aa4.29□□□□□ -1.72
HERC4-201ENST00000277817 TCOF1Q13428 1488 aaKnown RBP4.29□□□□□ -1.72
HERC4-201ENST00000277817 PTGER2P43116 358 aa4.29□□□□□ -1.72
HERC4-201ENST00000277817 SETD1AO15047 1707 aaKnown RBP4.29□□□□□ -1.72
HERC4-201ENST00000277817 PPP2R2DQ66LE6 453 aa4.29□□□□□ -1.72
HERC4-201ENST00000277817 NPATQ14207 1427 aa4.28□□□□□ -1.72
HERC4-201ENST00000277817 CDK11BP21127 795 aaKnown RBP4.28□□□□□ -1.72
HERC4-201ENST00000277817 ADAMTS19Q8TE59 1207 aa4.28□□□□□ -1.72
HERC4-201ENST00000277817 IQGAP3Q86VI3 1631 aa4.28□□□□□ -1.72
HERC4-201ENST00000277817 KDM4FA0A1W2PPD8 638 aa4.28□□□□□ -1.72
HERC4-201ENST00000277817 SKIV2LQ15477 1246 aaKnown RBP4.28□□□□□ -1.72
HERC4-201ENST00000277817 CCER1Q8TC90 406 aaPredicted RBP4.28□□□□□ -1.72
HERC4-201ENST00000277817 FAM212AQ96EL1 285 aa4.28□□□□□ -1.72
HERC4-201ENST00000277817 PTPRMP28827 1452 aa4.27□□□□□ -1.73
HERC4-201ENST00000277817 SHPRHQ149N8 1683 aa4.27□□□□□ -1.73
HERC4-201ENST00000277817 SPHKAPQ2M3C7 1700 aa4.27□□□□□ -1.73
HERC4-201ENST00000277817 RAPGEF2Q9Y4G8 1499 aa4.27□□□□□ -1.73
HERC4-201ENST00000277817 SOX12O15370 315 aa4.27□□□□□ -1.73
HERC4-201ENST00000277817 OSBPP22059 807 aa4.27□□□□□ -1.73
HERC4-201ENST00000277817 DSG3P32926 999 aa4.27□□□□□ -1.73
HERC4-201ENST00000277817 TUSC1Q2TAM9 212 aa4.27□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms