RNA–Protein interactions for RNA: ENST00000273342.8

COL8A1-202, Transcript of collagen type VIII alpha 1 chain, humanhuman

APPRIS P1 TSL 2 BASIC

Gene COL8A1, Length 3,029 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1-202ENST00000273342 RRAGDQ9NQL2 400 aaPredicted RBP16.6■□□□□ 0.25
COL8A1-202ENST00000273342 TRPM1Q7Z4N2 1603 aa16.6■□□□□ 0.25
COL8A1-202ENST00000273342 BECN1Q14457 450 aa16.59■□□□□ 0.25
COL8A1-202ENST00000273342 FAM43AQ8N2R8 423 aa16.59■□□□□ 0.25
COL8A1-202ENST00000273342 ATP10BO94823 1461 aa16.58■□□□□ 0.25
COL8A1-202ENST00000273342 PTPRGP23470 1445 aa16.58■□□□□ 0.25
COL8A1-202ENST00000273342 PLEKHH2Q8IVE3 1493 aa16.58■□□□□ 0.24
COL8A1-202ENST00000273342 GPRASP1Q5JY77 1395 aa16.58■□□□□ 0.24
COL8A1-202ENST00000273342 CDC42BPAQ5VT25 1732 aa16.57■□□□□ 0.24
COL8A1-202ENST00000273342 UBE2Q2Q8WVN8 375 aa16.57■□□□□ 0.24
COL8A1-202ENST00000273342 CENPJQ9HC77 1338 aaPredicted RBP16.57■□□□□ 0.24
COL8A1-202ENST00000273342 E9PSI1 815 aa16.56■□□□□ 0.24
COL8A1-202ENST00000273342 ABCC10Q5T3U5 1492 aa16.55■□□□□ 0.24
COL8A1-202ENST00000273342 PANK2Q9BZ23 570 aa16.55■□□□□ 0.24
COL8A1-202ENST00000273342 WDR7Q9Y4E6 1490 aa16.54■□□□□ 0.24
COL8A1-202ENST00000273342 PCDHB15Q9Y5E8 787 aa16.54■□□□□ 0.24
COL8A1-202ENST00000273342 NKTRP30414 1462 aaKnown RBP16.54■□□□□ 0.24
COL8A1-202ENST00000273342 RLBP1P12271 317 aa16.54■□□□□ 0.24
COL8A1-202ENST00000273342 TRMT2AQ8IZ69 625 aaKnown RBP16.54■□□□□ 0.24
COL8A1-202ENST00000273342 TBC1D2Q9BYX2 928 aa16.54■□□□□ 0.24
COL8A1-202ENST00000273342 RSPH6AQ9H0K4 717 aa16.54■□□□□ 0.24
COL8A1-202ENST00000273342 UPF2Q9HAU5 1272 aaKnown RBP16.54■□□□□ 0.24
COL8A1-202ENST00000273342 SHANK2Q9UPX8 1470 aa16.53■□□□□ 0.24
COL8A1-202ENST00000273342 EIF4G3O43432 1585 aaKnown RBP16.53■□□□□ 0.24
COL8A1-202ENST00000273342 EIF3AQ14152 1382 aaKnown RBP16.52■□□□□ 0.24
COL8A1-202ENST00000273342 CGNL1Q0VF96 1302 aa16.52■□□□□ 0.24
COL8A1-202ENST00000273342 PDZRN3Q9UPQ7 1066 aa16.52■□□□□ 0.23
COL8A1-202ENST00000273342 WWC1Q8IX03 1113 aa16.51■□□□□ 0.23
COL8A1-202ENST00000273342 PRDM15P57071 1507 aaPredicted RBP16.51■□□□□ 0.23
COL8A1-202ENST00000273342 CCDC141Q6ZP82 1450 aa16.51■□□□□ 0.23
COL8A1-202ENST00000273342 NAP1L5Q96NT1 182 aaPredicted RBP16.51■□□□□ 0.23
COL8A1-202ENST00000273342 CHGAP10645 457 aaKnown RBP16.5■□□□□ 0.23
COL8A1-202ENST00000273342 MFAP1P55081 439 aaKnown RBP16.5■□□□□ 0.23
COL8A1-202ENST00000273342 INSRP06213 1382 aa16.5■□□□□ 0.23
COL8A1-202ENST00000273342 ADCY10Q96PN6 1610 aa16.5■□□□□ 0.23
COL8A1-202ENST00000273342 MAPK8IP3Q9UPT6 1336 aa16.5■□□□□ 0.23
COL8A1-202ENST00000273342 CARD14Q9BXL6 1004 aa16.49■□□□□ 0.23
COL8A1-202ENST00000273342 XRCC6P12956 609 aaKnown RBP eCLIP16.49■□□□□ 0.23
COL8A1-202ENST00000273342 CDCA8Q53HL2 280 aa16.49■□□□□ 0.23
COL8A1-202ENST00000273342 PDE3AQ14432 1141 aa16.48■□□□□ 0.23
COL8A1-202ENST00000273342 CFAP70Q5T0N1 1121 aa16.48■□□□□ 0.23
COL8A1-202ENST00000273342 ANTXR1Q9H6X2 564 aa16.48■□□□□ 0.23
COL8A1-202ENST00000273342 AFAP1Q8N556 730 aa16.47■□□□□ 0.23
COL8A1-202ENST00000273342 GOLGA6L3A6NEY3 463 aa16.47■□□□□ 0.23
COL8A1-202ENST00000273342 SYNJ2O15056 1496 aa16.46■□□□□ 0.23
COL8A1-202ENST00000273342 SYCP2Q9BX26 1530 aa16.46■□□□□ 0.23
COL8A1-202ENST00000273342 L1TD1Q5T7N2 865 aaKnown RBP16.46■□□□□ 0.23
COL8A1-202ENST00000273342 RARSP54136 660 aaKnown RBP16.45■□□□□ 0.22
COL8A1-202ENST00000273342 TBC1D32Q96NH3 1257 aa16.45■□□□□ 0.22
COL8A1-202ENST00000273342 TCP11L2Q8N4U5 519 aa16.45■□□□□ 0.22
COL8A1-202ENST00000273342 RSPH4AQ5TD94 716 aa16.44■□□□□ 0.22
COL8A1-202ENST00000273342 SAMD9LQ8IVG5 1584 aa16.44■□□□□ 0.22
COL8A1-202ENST00000273342 ASXL1Q8IXJ9 1541 aa16.44■□□□□ 0.22
COL8A1-202ENST00000273342 ARHGAP5Q13017 1502 aa16.43■□□□□ 0.22
COL8A1-202ENST00000273342 MCM4P33991 863 aa16.43■□□□□ 0.22
COL8A1-202ENST00000273342 MORC1Q86VD1 984 aa16.43■□□□□ 0.22
COL8A1-202ENST00000273342 PMFBP1Q8TBY8 1022 aa16.43■□□□□ 0.22
COL8A1-202ENST00000273342 PNNQ9H307 717 aaKnown RBP16.41■□□□□ 0.22
COL8A1-202ENST00000273342 FOXD4L1Q9NU39 408 aa16.41■□□□□ 0.22
COL8A1-202ENST00000273342 PIK3C2GO75747 1445 aa16.41■□□□□ 0.22
COL8A1-202ENST00000273342 ABCA8O94911 1581 aa16.41■□□□□ 0.22
COL8A1-202ENST00000273342 FTSJ3Q8IY81 847 aaKnown RBP16.4■□□□□ 0.22
COL8A1-202ENST00000273342 TSR2Q969E8 191 aaKnown RBP16.4■□□□□ 0.22
COL8A1-202ENST00000273342 TRAK2O60296 914 aa16.4■□□□□ 0.22
COL8A1-202ENST00000273342 NUTM2DQ5VT03 806 aaPredicted RBP16.4■□□□□ 0.22
COL8A1-202ENST00000273342 C22orf23Q9BZE7 217 aa16.4■□□□□ 0.22
COL8A1-202ENST00000273342 SLC12A5Q9H2X9 1139 aa16.4■□□□□ 0.22
COL8A1-202ENST00000273342 RWDD1Q9H446 243 aaPredicted RBP16.4■□□□□ 0.22
COL8A1-202ENST00000273342 MYO5CQ9NQX4 1742 aa16.39■□□□□ 0.21
COL8A1-202ENST00000273342 NLRP1Q9C000 1473 aa16.38■□□□□ 0.21
COL8A1-202ENST00000273342 TRAK1Q9UPV9 953 aa16.37■□□□□ 0.21
COL8A1-202ENST00000273342 ARHGEF5Q12774 1597 aa16.37■□□□□ 0.21
COL8A1-202ENST00000273342 MTHFSP49914 203 aa16.37■□□□□ 0.21
COL8A1-202ENST00000273342 ADGRF5Q8IZF2 1346 aa16.37■□□□□ 0.21
COL8A1-202ENST00000273342 SCAF11Q99590 1463 aaKnown RBP16.36■□□□□ 0.21
COL8A1-202ENST00000273342 NUP160Q12769 1436 aa16.36■□□□□ 0.21
COL8A1-202ENST00000273342 U2AF1L5P0DN76 240 aaPredicted RBP16.36■□□□□ 0.21
COL8A1-202ENST00000273342 U2AF1Q01081 240 aaKnown RBP eCLIP16.36■□□□□ 0.21
COL8A1-202ENST00000273342 ITPRIPQ8IWB1 547 aa16.36■□□□□ 0.21
COL8A1-202ENST00000273342 KIF3BO15066 747 aa16.35■□□□□ 0.21
COL8A1-202ENST00000273342 RUNDC1Q96C34 613 aa16.35■□□□□ 0.21
COL8A1-202ENST00000273342 EIF2AK4Q9P2K8 1649 aaKnown RBP16.35■□□□□ 0.21
COL8A1-202ENST00000273342 CDC42BPBQ9Y5S2 1711 aa16.34■□□□□ 0.21
COL8A1-202ENST00000273342 CHMP5Q9NZZ3 219 aa16.34■□□□□ 0.21
COL8A1-202ENST00000273342 SMC4Q9NTJ3 1288 aa16.33■□□□□ 0.21
COL8A1-202ENST00000273342 SAFB2Q14151 953 aaKnown RBP eCLIP16.32■□□□□ 0.2
COL8A1-202ENST00000273342 TMEM132EQ6IEE7 984 aa16.32■□□□□ 0.2
COL8A1-202ENST00000273342 VSIG10Q8N0Z9 540 aa16.32■□□□□ 0.2
COL8A1-202ENST00000273342 MVPQ14764 893 aaKnown RBP16.32■□□□□ 0.2
COL8A1-202ENST00000273342 HSCBQ8IWL3 235 aa16.32■□□□□ 0.2
COL8A1-202ENST00000273342 DZIP1LQ8IYY4 767 aaKnown RBP16.32■□□□□ 0.2
COL8A1-202ENST00000273342 U2SURPO15042 1029 aaKnown RBP16.32■□□□□ 0.2
COL8A1-202ENST00000273342 MYH16Q9H6N6 1097 aa16.32■□□□□ 0.2
COL8A1-202ENST00000273342 FSD2A1L4K1 749 aa16.31■□□□□ 0.2
COL8A1-202ENST00000273342 EFCAB2Q5VUJ9 269 aa16.31■□□□□ 0.2
COL8A1-202ENST00000273342 ZKSCAN2Q63HK3 967 aa16.31■□□□□ 0.2
COL8A1-202ENST00000273342 LNPKQ9C0E8 428 aa16.3■□□□□ 0.2
COL8A1-202ENST00000273342 ABCC2Q92887 1545 aa16.3■□□□□ 0.2
COL8A1-202ENST00000273342 SPAG9O60271 1321 aaKnown RBP16.3■□□□□ 0.2
COL8A1-202ENST00000273342 HSP90AA1P07900 732 aaKnown RBP16.3■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms