RNA–Protein interactions for RNA: ENST00000269138.9

SS18-202, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-202ENST00000269138 NEURL4Q96JN8 1562 aa18.69■□□□□ 0.58
SS18-202ENST00000269138 RGL3Q3MIN7 710 aa18.69■□□□□ 0.58
SS18-202ENST00000269138 DMRT2Q9Y5R5 561 aa18.68■□□□□ 0.58
SS18-202ENST00000269138 SPATA31E1Q6ZUB1 1445 aa18.67■□□□□ 0.58
SS18-202ENST00000269138 NPHP4O75161 1426 aaPredicted RBP18.66■□□□□ 0.58
SS18-202ENST00000269138 KIF1BO60333 1816 aa18.66■□□□□ 0.58
SS18-202ENST00000269138 MED14O60244 1454 aa18.65■□□□□ 0.58
SS18-202ENST00000269138 PPP1R15AO75807 674 aaPredicted RBP18.65■□□□□ 0.58
SS18-202ENST00000269138 HDGFP51858 240 aaKnown RBP18.64■□□□□ 0.58
SS18-202ENST00000269138 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.64■□□□□ 0.58
SS18-202ENST00000269138 POLR1AO95602 1720 aaPredicted RBP18.64■□□□□ 0.58
SS18-202ENST00000269138 SIN3AQ96ST3 1273 aa18.64■□□□□ 0.57
SS18-202ENST00000269138 RPGRIP1LQ68CZ1 1315 aa18.62■□□□□ 0.57
SS18-202ENST00000269138 NEXMIFQ5QGS0 1516 aa18.61■□□□□ 0.57
SS18-202ENST00000269138 BCANQ96GW7 911 aa18.61■□□□□ 0.57
SS18-202ENST00000269138 SLC26A8Q96RN1 970 aa18.6■□□□□ 0.57
SS18-202ENST00000269138 PLEKHG1Q9ULL1 1385 aa18.6■□□□□ 0.57
SS18-202ENST00000269138 IQGAP1P46940 1657 aa18.59■□□□□ 0.57
SS18-202ENST00000269138 NEUROD1Q13562 356 aa18.59■□□□□ 0.57
SS18-202ENST00000269138 VGFO15240 615 aaPredicted RBP18.57■□□□□ 0.56
SS18-202ENST00000269138 ZNF335Q9H4Z2 1342 aaPredicted RBP18.57■□□□□ 0.56
SS18-202ENST00000269138 ADGRF5Q8IZF2 1346 aa18.56■□□□□ 0.56
SS18-202ENST00000269138 ADAMTS13Q76LX8 1427 aa18.54■□□□□ 0.56
SS18-202ENST00000269138 KDM2AQ9Y2K7 1162 aa18.54■□□□□ 0.56
SS18-202ENST00000269138 PPLO60437 1756 aa18.53■□□□□ 0.56
SS18-202ENST00000269138 DCAF11Q8TEB1 546 aa18.53■□□□□ 0.56
SS18-202ENST00000269138 TBX22Q9Y458 520 aa18.53■□□□□ 0.56
SS18-202ENST00000269138 IFT172Q9UG01 1749 aa18.5■□□□□ 0.55
SS18-202ENST00000269138 NRXN3Q9Y4C0 1643 aa18.5■□□□□ 0.55
SS18-202ENST00000269138 SETBP1Q9Y6X0 1596 aa18.5■□□□□ 0.55
SS18-202ENST00000269138 CCER1Q8TC90 406 aaPredicted RBP18.49■□□□□ 0.55
SS18-202ENST00000269138 L3MBTL2Q969R5 705 aa18.49■□□□□ 0.55
SS18-202ENST00000269138 LTBP4Q8N2S1 1624 aa18.48■□□□□ 0.55
SS18-202ENST00000269138 METP08581 1390 aa18.47■□□□□ 0.55
SS18-202ENST00000269138 MYOM2P54296 1465 aa18.47■□□□□ 0.55
SS18-202ENST00000269138 KCNA6P17658 529 aa18.46■□□□□ 0.55
SS18-202ENST00000269138 NRXN1Q9ULB1 1477 aa18.46■□□□□ 0.55
SS18-202ENST00000269138 PIK3C2GO75747 1445 aa18.45■□□□□ 0.54
SS18-202ENST00000269138 ALKQ9UM73 1620 aa18.45■□□□□ 0.54
SS18-202ENST00000269138 DIP2AQ14689 1571 aa18.44■□□□□ 0.54
SS18-202ENST00000269138 PTPRUQ92729 1446 aa18.44■□□□□ 0.54
SS18-202ENST00000269138 STRCP1A6NGW2 1772 aa18.44■□□□□ 0.54
SS18-202ENST00000269138 CFAP70Q5T0N1 1121 aa18.44■□□□□ 0.54
SS18-202ENST00000269138 STAC3Q96MF2 364 aa18.43■□□□□ 0.54
SS18-202ENST00000269138 C14orf93Q9H972 538 aaKnown RBP18.43■□□□□ 0.54
SS18-202ENST00000269138 TMEM132EQ6IEE7 984 aa18.42■□□□□ 0.54
SS18-202ENST00000269138 CERKQ8TCT0 537 aa18.42■□□□□ 0.54
SS18-202ENST00000269138 AMOTL2Q9Y2J4 779 aa18.42■□□□□ 0.54
SS18-202ENST00000269138 CLSPNQ9HAW4 1339 aa18.42■□□□□ 0.54
SS18-202ENST00000269138 PIK3R4Q99570 1358 aa18.41■□□□□ 0.54
SS18-202ENST00000269138 RBM33Q96EV2 1170 aaKnown RBP18.4■□□□□ 0.54
SS18-202ENST00000269138 TONSLQ96HA7 1378 aa18.4■□□□□ 0.54
SS18-202ENST00000269138 SETD1AO15047 1707 aaKnown RBP18.4■□□□□ 0.54
SS18-202ENST00000269138 PROSER2Q86WR7 435 aaPredicted RBP18.39■□□□□ 0.53
SS18-202ENST00000269138 CPS1P31327 1500 aa18.38■□□□□ 0.53
SS18-202ENST00000269138 NWD1Q149M9 1564 aa18.38■□□□□ 0.53
SS18-202ENST00000269138 CHD2O14647 1828 aaKnown RBP18.38■□□□□ 0.53
SS18-202ENST00000269138 LRRC7Q96NW7 1537 aa18.38■□□□□ 0.53
SS18-202ENST00000269138 PRAG1Q86YV5 1406 aa18.37■□□□□ 0.53
SS18-202ENST00000269138 ASXL1Q8IXJ9 1541 aa18.37■□□□□ 0.53
SS18-202ENST00000269138 STK26Q9P289 416 aa18.37■□□□□ 0.53
SS18-202ENST00000269138 NBPF8Q3BBV2 869 aa18.34■□□□□ 0.53
SS18-202ENST00000269138 TMEM94Q12767 1356 aa18.34■□□□□ 0.53
SS18-202ENST00000269138 NKTRP30414 1462 aaKnown RBP18.34■□□□□ 0.53
SS18-202ENST00000269138 NBPF1Q3BBV0 1214 aa18.33■□□□□ 0.53
SS18-202ENST00000269138 XRN1Q8IZH2 1706 aaKnown RBP18.33■□□□□ 0.52
SS18-202ENST00000269138 LRPPRCP42704 1394 aaKnown RBP18.33■□□□□ 0.52
SS18-202ENST00000269138 ROBO2Q9HCK4 1378 aa18.32■□□□□ 0.52
SS18-202ENST00000269138 YTHDC2Q9H6S0 1430 aaKnown RBP18.31■□□□□ 0.52
SS18-202ENST00000269138 ADGRB1O14514 1584 aa18.31■□□□□ 0.52
SS18-202ENST00000269138 LAMC1P11047 1609 aa18.3■□□□□ 0.52
SS18-202ENST00000269138 ABCC11Q96J66 1382 aa18.3■□□□□ 0.52
SS18-202ENST00000269138 WAPLQ7Z5K2 1190 aa18.28■□□□□ 0.52
SS18-202ENST00000269138 TRAK1Q9UPV9 953 aa18.28■□□□□ 0.52
SS18-202ENST00000269138 XIRP1Q702N8 1843 aaKnown RBP18.27■□□□□ 0.52
SS18-202ENST00000269138 IQSEC2Q5JU85 1478 aa18.27■□□□□ 0.52
SS18-202ENST00000269138 C14orf37Q86TY3 774 aa18.27■□□□□ 0.51
SS18-202ENST00000269138 TIMELESSQ9UNS1 1208 aa18.27■□□□□ 0.51
SS18-202ENST00000269138 TECPR2O15040 1411 aa18.27■□□□□ 0.51
SS18-202ENST00000269138 PTCH1Q13635 1447 aa18.27■□□□□ 0.51
SS18-202ENST00000269138 PLEKHH1Q9ULM0 1364 aa18.26■□□□□ 0.51
SS18-202ENST00000269138 UBAP1LF5GYI3 381 aa18.24■□□□□ 0.51
SS18-202ENST00000269138 KIAA1210Q9ULL0 1709 aa18.24■□□□□ 0.51
SS18-202ENST00000269138 NCOA3Q9Y6Q9 1424 aa18.24■□□□□ 0.51
SS18-202ENST00000269138 SIRT1Q96EB6 747 aa18.23■□□□□ 0.51
SS18-202ENST00000269138 SAFB2Q14151 953 aaKnown RBP eCLIP18.23■□□□□ 0.51
SS18-202ENST00000269138 PRAM1Q96QH2 718 aa18.23■□□□□ 0.51
SS18-202ENST00000269138 TRPM1Q7Z4N2 1603 aa18.22■□□□□ 0.51
SS18-202ENST00000269138 ROCK2O75116 1388 aaKnown RBP18.22■□□□□ 0.51
SS18-202ENST00000269138 MSH6P52701 1360 aa18.22■□□□□ 0.51
SS18-202ENST00000269138 C19orf44Q9H6X5 657 aa18.22■□□□□ 0.51
SS18-202ENST00000269138 KNDC1Q76NI1 1749 aa18.21■□□□□ 0.51
SS18-202ENST00000269138 FAM135BQ49AJ0 1406 aa18.21■□□□□ 0.51
SS18-202ENST00000269138 POGKQ9P215 609 aa18.2■□□□□ 0.5
SS18-202ENST00000269138 DLC1Q96QB1 1528 aa18.2■□□□□ 0.5
SS18-202ENST00000269138 ADGRL3Q9HAR2 1447 aa18.19■□□□□ 0.5
SS18-202ENST00000269138 TOM1O60784 492 aa18.18■□□□□ 0.5
SS18-202ENST00000269138 FBXO41Q8TF61 875 aa18.18■□□□□ 0.5
SS18-202ENST00000269138 RALGAPBQ86X10 1494 aa18.18■□□□□ 0.5
SS18-202ENST00000269138 GPRASP1Q5JY77 1395 aa18.18■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 89.9 ms