RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 ANKRD50Q9ULJ7 1429 aa13.27□□□□□ -0.28
CD44-201ENST00000263398 MINK1Q8N4C8 1332 aaPredicted RBP13.27□□□□□ -0.29
CD44-201ENST00000263398 REC8O95072 547 aa13.27□□□□□ -0.29
CD44-201ENST00000263398 RILPL2Q969X0 211 aa13.27□□□□□ -0.29
CD44-201ENST00000263398 RRBP1Q9P2E9 1410 aaKnown RBP13.27□□□□□ -0.29
CD44-201ENST00000263398 RIPK4P57078 832 aa13.26□□□□□ -0.29
CD44-201ENST00000263398 CHMP5Q9NZZ3 219 aa13.26□□□□□ -0.29
CD44-201ENST00000263398 ISY1Q9ULR0 285 aaKnown RBP13.26□□□□□ -0.29
CD44-201ENST00000263398 PEG3Q9GZU2 1588 aa13.26□□□□□ -0.29
CD44-201ENST00000263398 FYCO1Q9BQS8 1478 aa13.25□□□□□ -0.29
CD44-201ENST00000263398 FOXD4L5Q5VV16 416 aaPredicted RBP13.25□□□□□ -0.29
CD44-201ENST00000263398 FOXD4L4Q8WXT5 416 aaPredicted RBP13.25□□□□□ -0.29
CD44-201ENST00000263398 NCOA2Q15596 1464 aa13.25□□□□□ -0.29
CD44-201ENST00000263398 CHMP4CQ96CF2 233 aa13.23□□□□□ -0.29
CD44-201ENST00000263398 RSPH6AQ9H0K4 717 aa13.23□□□□□ -0.29
CD44-201ENST00000263398 ARID3AQ99856 593 aa13.23□□□□□ -0.29
CD44-201ENST00000263398 SF3A1Q15459 793 aaKnown RBP13.23□□□□□ -0.29
CD44-201ENST00000263398 TEFQ10587 303 aa13.22□□□□□ -0.29
CD44-201ENST00000263398 PRDM2Q13029 1718 aa13.22□□□□□ -0.29
CD44-201ENST00000263398 ADAMTS8Q9UP79 889 aa13.21□□□□□ -0.29
CD44-201ENST00000263398 RUFY2Q8WXA3 655 aa13.21□□□□□ -0.29
CD44-201ENST00000263398 GRIN2BQ13224 1484 aa13.21□□□□□ -0.29
CD44-201ENST00000263398 ROCK1Q13464 1354 aa13.21□□□□□ -0.3
CD44-201ENST00000263398 GNAI1P63096 354 aa13.2□□□□□ -0.3
CD44-201ENST00000263398 DIAPH3Q9NSV4 1193 aa13.2□□□□□ -0.3
CD44-201ENST00000263398 H3BQV1 296 aa13.19□□□□□ -0.3
CD44-201ENST00000263398 IFFO2Q5TF58 517 aa13.19□□□□□ -0.3
CD44-201ENST00000263398 FAM184AQ8NB25 1140 aa13.19□□□□□ -0.3
CD44-201ENST00000263398 DNMBPQ6XZF7 1577 aa13.19□□□□□ -0.3
CD44-201ENST00000263398 ZKSCAN1P17029 563 aaPredicted RBP13.19□□□□□ -0.3
CD44-201ENST00000263398 C1orf141Q5JVX7 400 aa13.19□□□□□ -0.3
CD44-201ENST00000263398 LNPKQ9C0E8 428 aa13.18□□□□□ -0.3
CD44-201ENST00000263398 HSP90AA2PQ14568 343 aaPredicted RBP13.18□□□□□ -0.3
CD44-201ENST00000263398 C22orf23Q9BZE7 217 aa13.18□□□□□ -0.3
CD44-201ENST00000263398 PANK1Q8TE04 598 aa13.18□□□□□ -0.3
CD44-201ENST00000263398 NEXNQ0ZGT2 675 aa13.18□□□□□ -0.3
CD44-201ENST00000263398 TOMM22Q9NS69 142 aa13.17□□□□□ -0.3
CD44-201ENST00000263398 MRC2Q9UBG0 1479 aa13.17□□□□□ -0.3
CD44-201ENST00000263398 NUCB2P80303 420 aa13.17□□□□□ -0.3
CD44-201ENST00000263398 FOXD4L6Q3SYB3 417 aaPredicted RBP13.17□□□□□ -0.3
CD44-201ENST00000263398 FOXD4L3Q6VB84 417 aaPredicted RBP13.17□□□□□ -0.3
CD44-201ENST00000263398 CDCA7LQ96GN5 454 aa13.17□□□□□ -0.3
CD44-201ENST00000263398 C9orf78Q9NZ63 289 aaPredicted RBP13.17□□□□□ -0.3
CD44-201ENST00000263398 NFKBIBQ15653 356 aa13.17□□□□□ -0.3
CD44-201ENST00000263398 GOLGA6L19H0YKK7 550 aa13.17□□□□□ -0.3
CD44-201ENST00000263398 INTS3Q68E01 1043 aaKnown RBP13.17□□□□□ -0.3
CD44-201ENST00000263398 BECN2A8MW95 431 aa13.16□□□□□ -0.3
CD44-201ENST00000263398 RASSF8Q8NHQ8 419 aa13.16□□□□□ -0.3
CD44-201ENST00000263398 FKBP5Q13451 457 aaPredicted RBP13.16□□□□□ -0.3
CD44-201ENST00000263398 TCP11L2Q8N4U5 519 aa13.15□□□□□ -0.3
CD44-201ENST00000263398 ANO2Q9NQ90 1003 aa13.15□□□□□ -0.3
CD44-201ENST00000263398 EIF2S2P20042 333 aaKnown RBP13.15□□□□□ -0.3
CD44-201ENST00000263398 MTHFSP49914 203 aa13.15□□□□□ -0.3
CD44-201ENST00000263398 LRRFIP1Q32MZ4 808 aaKnown RBP13.15□□□□□ -0.3
CD44-201ENST00000263398 GGNBP2Q9H3C7 697 aa13.15□□□□□ -0.3
CD44-201ENST00000263398 CLSTN1O94985 981 aa13.15□□□□□ -0.31
CD44-201ENST00000263398 PPP2R1AP30153 589 aa13.15□□□□□ -0.31
CD44-201ENST00000263398 SNAPC4Q5SXM2 1469 aa13.14□□□□□ -0.31
CD44-201ENST00000263398 CPLX2Q6PUV4 134 aaKnown RBP13.14□□□□□ -0.31
CD44-201ENST00000263398 ABCA10Q8WWZ4 1543 aa13.14□□□□□ -0.31
CD44-201ENST00000263398 TIAM1Q13009 1591 aa13.14□□□□□ -0.31
CD44-201ENST00000263398 URB2Q14146 1524 aaKnown RBP13.14□□□□□ -0.31
CD44-201ENST00000263398 HFM1A2PYH4 1435 aa13.14□□□□□ -0.31
CD44-201ENST00000263398 IFIT2P09913 472 aaKnown RBP13.13□□□□□ -0.31
CD44-201ENST00000263398 NBPF8Q3BBV2 869 aa13.13□□□□□ -0.31
CD44-201ENST00000263398 CYB5RLQ6IPT4 315 aa13.13□□□□□ -0.31
CD44-201ENST00000263398 PRG4Q92954 1404 aaPredicted RBP13.13□□□□□ -0.31
CD44-201ENST00000263398 PDE3AQ14432 1141 aa13.13□□□□□ -0.31
CD44-201ENST00000263398 PNISRQ8TF01 805 aaKnown RBP13.13□□□□□ -0.31
CD44-201ENST00000263398 TPM3P06753 285 aa13.13□□□□□ -0.31
CD44-201ENST00000263398 HSP90AB4PQ58FF6 505 aa13.13□□□□□ -0.31
CD44-201ENST00000263398 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.12□□□□□ -0.31
CD44-201ENST00000263398 FRAT2O75474 233 aaPredicted RBP13.12□□□□□ -0.31
CD44-201ENST00000263398 DDX58O95786 925 aaKnown RBP13.12□□□□□ -0.31
CD44-201ENST00000263398 HMOX1P09601 288 aa13.12□□□□□ -0.31
CD44-201ENST00000263398 CFAP70Q5T0N1 1121 aa13.12□□□□□ -0.31
CD44-201ENST00000263398 RNF20Q5VTR2 975 aa13.12□□□□□ -0.31
CD44-201ENST00000263398 GTF2E1P29083 439 aaPredicted RBP13.12□□□□□ -0.31
CD44-201ENST00000263398 TSPYL4Q9UJ04 414 aa13.11□□□□□ -0.31
CD44-201ENST00000263398 CDK13Q14004 1512 aaKnown RBP13.11□□□□□ -0.31
CD44-201ENST00000263398 NBPF1Q3BBV0 1214 aa13.11□□□□□ -0.31
CD44-201ENST00000263398 TTC5Q8N0Z6 440 aa13.11□□□□□ -0.31
CD44-201ENST00000263398 CDC45O75419 566 aa13.11□□□□□ -0.31
CD44-201ENST00000263398 TMEM132EQ6IEE7 984 aa13.11□□□□□ -0.31
CD44-201ENST00000263398 GOLGA6L1Q8N7Z2 621 aa13.11□□□□□ -0.31
CD44-201ENST00000263398 TMX4Q9H1E5 349 aaPredicted RBP13.11□□□□□ -0.31
CD44-201ENST00000263398 KIAA1107Q9UPP5 1409 aa13.11□□□□□ -0.31
CD44-201ENST00000263398 MCTP1Q6DN14 999 aa13.1□□□□□ -0.31
CD44-201ENST00000263398 NECTIN2Q92692 538 aa13.1□□□□□ -0.31
CD44-201ENST00000263398 CCDC9Q9Y3X0 531 aaKnown RBP13.1□□□□□ -0.31
CD44-201ENST00000263398 CREBRFQ8IUR6 639 aa13.1□□□□□ -0.31
CD44-201ENST00000263398 G3BP1Q13283 466 aaKnown RBP eCLIP13.1□□□□□ -0.31
CD44-201ENST00000263398 CABP2Q9NPB3 220 aa13.1□□□□□ -0.31
CD44-201ENST00000263398 NOC3LQ8WTT2 800 aaKnown RBP13.1□□□□□ -0.31
CD44-201ENST00000263398 EFCAB5A4FU69 1503 aa13.09□□□□□ -0.31
CD44-201ENST00000263398 AFAP1Q8N556 730 aa13.09□□□□□ -0.31
CD44-201ENST00000263398 SMC3Q9UQE7 1217 aa13.09□□□□□ -0.31
CD44-201ENST00000263398 PCF11O94913 1555 aaKnown RBP13.09□□□□□ -0.31
CD44-201ENST00000263398 AKAP17AQ02040 695 aaKnown RBP13.09□□□□□ -0.31
CD44-201ENST00000263398 SYNE3Q6ZMZ3 975 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms