RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 SPINK5Q9NQ38 1064 aaPredicted RBP16.41■□□□□ 0.22
LIG1-201ENST00000263274 KDM5DQ9BY66 1539 aa16.41■□□□□ 0.22
LIG1-201ENST00000263274 AMER1Q5JTC6 1135 aaPredicted RBP16.4■□□□□ 0.22
LIG1-201ENST00000263274 ADCY10Q96PN6 1610 aa16.4■□□□□ 0.22
LIG1-201ENST00000263274 SAMD9LQ8IVG5 1584 aa16.39■□□□□ 0.21
LIG1-201ENST00000263274 BCL2L13Q9BXK5 485 aa16.39■□□□□ 0.21
LIG1-201ENST00000263274 COG6Q9Y2V7 657 aa16.39■□□□□ 0.21
LIG1-201ENST00000263274 FAM161AQ3B820 660 aa16.39■□□□□ 0.21
LIG1-201ENST00000263274 NUTM2DQ5VT03 806 aaPredicted RBP16.38■□□□□ 0.21
LIG1-201ENST00000263274 TRAK1Q9UPV9 953 aa16.38■□□□□ 0.21
LIG1-201ENST00000263274 DNAJC5Q9H3Z4 198 aa16.38■□□□□ 0.21
LIG1-201ENST00000263274 PANK1Q8TE04 598 aa16.37■□□□□ 0.21
LIG1-201ENST00000263274 CLUAP1Q96AJ1 413 aa16.37■□□□□ 0.21
LIG1-201ENST00000263274 SLFN5Q08AF3 891 aa16.37■□□□□ 0.21
LIG1-201ENST00000263274 GPRASP1Q5JY77 1395 aa16.37■□□□□ 0.21
LIG1-201ENST00000263274 SAFB2Q14151 953 aaKnown RBP eCLIP16.36■□□□□ 0.21
LIG1-201ENST00000263274 NFKBIBQ15653 356 aa16.36■□□□□ 0.21
LIG1-201ENST00000263274 MORC1Q86VD1 984 aa16.36■□□□□ 0.21
LIG1-201ENST00000263274 DMRT2Q9Y5R5 561 aa16.35■□□□□ 0.21
LIG1-201ENST00000263274 MAGI2Q86UL8 1455 aa16.34■□□□□ 0.21
LIG1-201ENST00000263274 ARXQ96QS3 562 aa16.34■□□□□ 0.21
LIG1-201ENST00000263274 TRPM1Q7Z4N2 1603 aa16.33■□□□□ 0.21
LIG1-201ENST00000263274 BLMP54132 1417 aaPredicted RBP16.33■□□□□ 0.2
LIG1-201ENST00000263274 GGT6Q6P531 493 aa16.33■□□□□ 0.2
LIG1-201ENST00000263274 TRAPPC8Q9Y2L5 1435 aa16.33■□□□□ 0.2
LIG1-201ENST00000263274 USP35Q9P2H5 1018 aa16.32■□□□□ 0.2
LIG1-201ENST00000263274 ARHGEF5Q12774 1597 aa16.32■□□□□ 0.2
LIG1-201ENST00000263274 TMEM132EQ6IEE7 984 aa16.32■□□□□ 0.2
LIG1-201ENST00000263274 KANK1Q14678 1352 aa16.32■□□□□ 0.2
LIG1-201ENST00000263274 ADGRF5Q8IZF2 1346 aa16.31■□□□□ 0.2
LIG1-201ENST00000263274 CENPJQ9HC77 1338 aaPredicted RBP16.31■□□□□ 0.2
LIG1-201ENST00000263274 E9PSI1 815 aa16.31■□□□□ 0.2
LIG1-201ENST00000263274 SLKQ9H2G2 1235 aaPredicted RBP16.31■□□□□ 0.2
LIG1-201ENST00000263274 PKNOX2Q96KN3 472 aa16.31■□□□□ 0.2
LIG1-201ENST00000263274 SLC12A5Q9H2X9 1139 aa16.3■□□□□ 0.2
LIG1-201ENST00000263274 IGHDP01880 384 aa16.3■□□□□ 0.2
LIG1-201ENST00000263274 CDC42BPBQ9Y5S2 1711 aa16.3■□□□□ 0.2
LIG1-201ENST00000263274 SPRYD3Q8NCJ5 442 aa16.29■□□□□ 0.2
LIG1-201ENST00000263274 EIF3AQ14152 1382 aaKnown RBP16.29■□□□□ 0.2
LIG1-201ENST00000263274 FRAT2O75474 233 aaPredicted RBP16.29■□□□□ 0.2
LIG1-201ENST00000263274 C8orf34Q49A92 452 aa16.29■□□□□ 0.2
LIG1-201ENST00000263274 BRPF3Q9ULD4 1205 aa16.29■□□□□ 0.2
LIG1-201ENST00000263274 KDM2BQ8NHM5 1336 aa16.29■□□□□ 0.2
LIG1-201ENST00000263274 TTC37Q6PGP7 1564 aa16.29■□□□□ 0.2
LIG1-201ENST00000263274 CARD14Q9BXL6 1004 aa16.29■□□□□ 0.2
LIG1-201ENST00000263274 GSE1Q14687 1217 aa16.28■□□□□ 0.2
LIG1-201ENST00000263274 ZMYM4Q5VZL5 1548 aa16.28■□□□□ 0.2
LIG1-201ENST00000263274 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.28■□□□□ 0.2
LIG1-201ENST00000263274 CLASP1Q7Z460 1538 aa16.27■□□□□ 0.2
LIG1-201ENST00000263274 FAM69CQ0P6D2 419 aa16.26■□□□□ 0.19
LIG1-201ENST00000263274 WDR7Q9Y4E6 1490 aa16.26■□□□□ 0.19
LIG1-201ENST00000263274 SCAPERQ9BY12 1400 aa16.26■□□□□ 0.19
LIG1-201ENST00000263274 PRDM15P57071 1507 aaPredicted RBP16.26■□□□□ 0.19
LIG1-201ENST00000263274 U2AF1L5P0DN76 240 aaPredicted RBP16.26■□□□□ 0.19
LIG1-201ENST00000263274 U2AF1Q01081 240 aaKnown RBP eCLIP16.26■□□□□ 0.19
LIG1-201ENST00000263274 U2SURPO15042 1029 aaKnown RBP16.25■□□□□ 0.19
LIG1-201ENST00000263274 TNNQ9UQP3 1299 aa16.25■□□□□ 0.19
LIG1-201ENST00000263274 WWC1Q8IX03 1113 aa16.25■□□□□ 0.19
LIG1-201ENST00000263274 TCP11L2Q8N4U5 519 aa16.25■□□□□ 0.19
LIG1-201ENST00000263274 DUOX2Q9NRD8 1548 aa16.25■□□□□ 0.19
LIG1-201ENST00000263274 SCAF11Q99590 1463 aaKnown RBP16.25■□□□□ 0.19
LIG1-201ENST00000263274 E9PCH4 1651 aa16.24■□□□□ 0.19
LIG1-201ENST00000263274 PREX2Q70Z35 1606 aa16.24■□□□□ 0.19
LIG1-201ENST00000263274 STK26Q9P289 416 aa16.24■□□□□ 0.19
LIG1-201ENST00000263274 MTHFSP49914 203 aa16.23■□□□□ 0.19
LIG1-201ENST00000263274 PLCH2O75038 1416 aa16.23■□□□□ 0.19
LIG1-201ENST00000263274 ZNF521Q96K83 1311 aa16.23■□□□□ 0.19
LIG1-201ENST00000263274 UPF2Q9HAU5 1272 aaKnown RBP16.23■□□□□ 0.19
LIG1-201ENST00000263274 CFAP53Q96M91 514 aa16.22■□□□□ 0.19
LIG1-201ENST00000263274 ASXL1Q8IXJ9 1541 aa16.22■□□□□ 0.19
LIG1-201ENST00000263274 SEC24BO95487 1268 aa16.21■□□□□ 0.19
LIG1-201ENST00000263274 CGNL1Q0VF96 1302 aa16.21■□□□□ 0.19
LIG1-201ENST00000263274 FTSJ3Q8IY81 847 aaKnown RBP16.21■□□□□ 0.18
LIG1-201ENST00000263274 NKTRP30414 1462 aaKnown RBP16.2■□□□□ 0.18
LIG1-201ENST00000263274 EIF2AK4Q9P2K8 1649 aaKnown RBP16.2■□□□□ 0.18
LIG1-201ENST00000263274 BECN1Q14457 450 aa16.19■□□□□ 0.18
LIG1-201ENST00000263274 RUNDC1Q96C34 613 aa16.18■□□□□ 0.18
LIG1-201ENST00000263274 RIMBP3CA6NJZ7 1639 aa16.18■□□□□ 0.18
LIG1-201ENST00000263274 RIMBP3BA6NNM3 1639 aa16.18■□□□□ 0.18
LIG1-201ENST00000263274 RIMBP3Q9UFD9 1639 aa16.18■□□□□ 0.18
LIG1-201ENST00000263274 MAST1Q9Y2H9 1570 aa16.17■□□□□ 0.18
LIG1-201ENST00000263274 STAC3Q96MF2 364 aa16.17■□□□□ 0.18
LIG1-201ENST00000263274 PDE3AQ14432 1141 aa16.17■□□□□ 0.18
LIG1-201ENST00000263274 SRPK2P78362 688 aaKnown RBP16.16■□□□□ 0.18
LIG1-201ENST00000263274 TSR2Q969E8 191 aaKnown RBP16.16■□□□□ 0.18
LIG1-201ENST00000263274 CABP2Q9NPB3 220 aa16.16■□□□□ 0.18
LIG1-201ENST00000263274 NSD3Q9BZ95 1437 aa16.16■□□□□ 0.18
LIG1-201ENST00000263274 MYO5CQ9NQX4 1742 aa16.16■□□□□ 0.18
LIG1-201ENST00000263274 RLBP1P12271 317 aa16.16■□□□□ 0.18
LIG1-201ENST00000263274 UNC13BO14795 1591 aa16.16■□□□□ 0.18
LIG1-201ENST00000263274 ATP10AO60312 1499 aa16.15■□□□□ 0.18
LIG1-201ENST00000263274 PIK3C2GO75747 1445 aa16.15■□□□□ 0.18
LIG1-201ENST00000263274 RARSP54136 660 aaKnown RBP16.15■□□□□ 0.18
LIG1-201ENST00000263274 TRMT2AQ8IZ69 625 aaKnown RBP16.15■□□□□ 0.18
LIG1-201ENST00000263274 PCDHB15Q9Y5E8 787 aa16.15■□□□□ 0.18
LIG1-201ENST00000263274 PDZRN3Q9UPQ7 1066 aa16.15■□□□□ 0.18
LIG1-201ENST00000263274 IQGAP3Q86VI3 1631 aa16.15■□□□□ 0.18
LIG1-201ENST00000263274 INSRP06213 1382 aa16.14■□□□□ 0.17
LIG1-201ENST00000263274 UGGT1Q9NYU2 1555 aa16.14■□□□□ 0.17
LIG1-201ENST00000263274 PMFBP1Q8TBY8 1022 aa16.13■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms