RNA–Protein interactions for RNA: ENST00000251739.9

VPS50-201, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS50, Length 1,193 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-201ENST00000251739 ANKRD30AQ9BXX3 1397 aa16.17■□□□□ 0.18
VPS50-201ENST00000251739 RRP7BPQ9NSQ0 103 aa16.17■□□□□ 0.18
VPS50-201ENST00000251739 NOS1P29475 1434 aa16.14■□□□□ 0.17
VPS50-201ENST00000251739 KANK1Q14678 1352 aa16.13■□□□□ 0.17
VPS50-201ENST00000251739 TET3O43151 1660 aa16.12■□□□□ 0.17
VPS50-201ENST00000251739 LTKP29376 864 aa16.12■□□□□ 0.17
VPS50-201ENST00000251739 ADGRB3O60242 1522 aa16.12■□□□□ 0.17
VPS50-201ENST00000251739 MED1Q15648 1581 aaPredicted RBP16.12■□□□□ 0.17
VPS50-201ENST00000251739 TMEM2Q9UHN6 1383 aa16.12■□□□□ 0.17
VPS50-201ENST00000251739 TOM1O60784 492 aa16.11■□□□□ 0.17
VPS50-201ENST00000251739 UNC13BO14795 1591 aa16.11■□□□□ 0.17
VPS50-201ENST00000251739 GCC2Q8IWJ2 1684 aa16.11■□□□□ 0.17
VPS50-201ENST00000251739 SOCS7O14512 581 aa16.1■□□□□ 0.17
VPS50-201ENST00000251739 HSPA1LP34931 641 aa16.1■□□□□ 0.17
VPS50-201ENST00000251739 CHIC2Q9UKJ5 165 aa16.1■□□□□ 0.17
VPS50-201ENST00000251739 MYO5BQ9ULV0 1848 aa16.1■□□□□ 0.17
VPS50-201ENST00000251739 RPRD2Q5VT52 1461 aaKnown RBP16.1■□□□□ 0.17
VPS50-201ENST00000251739 ANKRD50Q9ULJ7 1429 aa16.09■□□□□ 0.17
VPS50-201ENST00000251739 PIP4K2BP78356 416 aa16.07■□□□□ 0.16
VPS50-201ENST00000251739 NWD1Q149M9 1564 aa16.06■□□□□ 0.16
VPS50-201ENST00000251739 IDI1Q13907 227 aa16.06■□□□□ 0.16
VPS50-201ENST00000251739 TXNDC2Q86VQ3 553 aa16.06■□□□□ 0.16
VPS50-201ENST00000251739 E9PCH4 1651 aa16.04■□□□□ 0.16
VPS50-201ENST00000251739 TMEM131LA2VDJ0 1609 aa16.04■□□□□ 0.16
VPS50-201ENST00000251739 IQGAP3Q86VI3 1631 aa16.04■□□□□ 0.16
VPS50-201ENST00000251739 EID1Q9Y6B2 187 aa16.03■□□□□ 0.16
VPS50-201ENST00000251739 ZFYVE9O95405 1425 aa16.02■□□□□ 0.16
VPS50-201ENST00000251739 ROCK1Q13464 1354 aa16.01■□□□□ 0.15
VPS50-201ENST00000251739 FAM50AQ14320 339 aaKnown RBP16.01■□□□□ 0.15
VPS50-201ENST00000251739 SLC52A1Q9NWF4 448 aa16.01■□□□□ 0.15
VPS50-201ENST00000251739 NKTRP30414 1462 aaKnown RBP16.01■□□□□ 0.15
VPS50-201ENST00000251739 CHD2O14647 1828 aaKnown RBP16■□□□□ 0.15
VPS50-201ENST00000251739 DSG3P32926 999 aa15.99■□□□□ 0.15
VPS50-201ENST00000251739 STAG3Q9UJ98 1225 aa15.97■□□□□ 0.15
VPS50-201ENST00000251739 TMEM94Q12767 1356 aa15.97■□□□□ 0.15
VPS50-201ENST00000251739 FAM135BQ49AJ0 1406 aa15.95■□□□□ 0.14
VPS50-201ENST00000251739 KCNA6P17658 529 aa15.95■□□□□ 0.14
VPS50-201ENST00000251739 PLEKHG1Q9ULL1 1385 aa15.95■□□□□ 0.14
VPS50-201ENST00000251739 ROBO1Q9Y6N7 1651 aa15.95■□□□□ 0.14
VPS50-201ENST00000251739 RIMS2Q9UQ26 1411 aa15.94■□□□□ 0.14
VPS50-201ENST00000251739 SLC26A8Q96RN1 970 aa15.94■□□□□ 0.14
VPS50-201ENST00000251739 DIP2AQ14689 1571 aa15.92■□□□□ 0.14
VPS50-201ENST00000251739 SPHKAPQ2M3C7 1700 aa15.91■□□□□ 0.14
VPS50-201ENST00000251739 ABCB7O75027 752 aa15.91■□□□□ 0.14
VPS50-201ENST00000251739 POLA2Q14181 598 aa15.9■□□□□ 0.14
VPS50-201ENST00000251739 ADAMTS13Q76LX8 1427 aa15.9■□□□□ 0.14
VPS50-201ENST00000251739 NRXN3Q9Y4C0 1643 aa15.88■□□□□ 0.13
VPS50-201ENST00000251739 PROSER2Q86WR7 435 aaPredicted RBP15.87■□□□□ 0.13
VPS50-201ENST00000251739 NUP155O75694 1391 aa15.87■□□□□ 0.13
VPS50-201ENST00000251739 TBX22Q9Y458 520 aa15.85■□□□□ 0.13
VPS50-201ENST00000251739 PIK3R4Q99570 1358 aa15.85■□□□□ 0.13
VPS50-201ENST00000251739 XRN1Q8IZH2 1706 aaKnown RBP15.85■□□□□ 0.13
VPS50-201ENST00000251739 RRBP1Q9P2E9 1410 aaKnown RBP15.85■□□□□ 0.13
VPS50-201ENST00000251739 NCOA3Q9Y6Q9 1424 aa15.85■□□□□ 0.13
VPS50-201ENST00000251739 SETBP1Q9Y6X0 1596 aa15.84■□□□□ 0.13
VPS50-201ENST00000251739 RBM33Q96EV2 1170 aaKnown RBP15.84■□□□□ 0.13
VPS50-201ENST00000251739 PHLPP1O60346 1717 aa15.84■□□□□ 0.13
VPS50-201ENST00000251739 SIPA1L2Q9P2F8 1722 aaPredicted RBP15.84■□□□□ 0.13
VPS50-201ENST00000251739 MSH6P52701 1360 aa15.84■□□□□ 0.13
VPS50-201ENST00000251739 TRPM2O94759 1503 aa15.84■□□□□ 0.13
VPS50-201ENST00000251739 COL16A1Q07092 1604 aaPredicted RBP15.83■□□□□ 0.13
VPS50-201ENST00000251739 ABCF1Q8NE71 845 aaKnown RBP eCLIP15.83■□□□□ 0.12
VPS50-201ENST00000251739 PPP1R15AO75807 674 aaPredicted RBP15.82■□□□□ 0.12
VPS50-201ENST00000251739 HDGFP51858 240 aaKnown RBP15.82■□□□□ 0.12
VPS50-201ENST00000251739 CLTCL1P53675 1640 aa15.81■□□□□ 0.12
VPS50-201ENST00000251739 RGS17Q9UGC6 210 aaPredicted RBP15.81■□□□□ 0.12
VPS50-201ENST00000251739 NAIPQ13075 1403 aa15.79■□□□□ 0.12
VPS50-201ENST00000251739 PTPRUQ92729 1446 aa15.79■□□□□ 0.12
VPS50-201ENST00000251739 BCANQ96GW7 911 aa15.79■□□□□ 0.12
VPS50-201ENST00000251739 AHDC1Q5TGY3 1603 aaPredicted RBP15.79■□□□□ 0.12
VPS50-201ENST00000251739 NEXMIFQ5QGS0 1516 aa15.78■□□□□ 0.12
VPS50-201ENST00000251739 ITGAEP38570 1179 aa15.78■□□□□ 0.12
VPS50-201ENST00000251739 SLAIN2Q9P270 581 aa15.78■□□□□ 0.12
VPS50-201ENST00000251739 KIF1BO60333 1816 aa15.78■□□□□ 0.12
VPS50-201ENST00000251739 CHGAP10645 457 aaKnown RBP15.77■□□□□ 0.12
VPS50-201ENST00000251739 NUTM2DQ5VT03 806 aaPredicted RBP15.76■□□□□ 0.11
VPS50-201ENST00000251739 PPARGC1BQ86YN6 1023 aaKnown RBP15.76■□□□□ 0.11
VPS50-201ENST00000251739 SETD1AO15047 1707 aaKnown RBP15.76■□□□□ 0.11
VPS50-201ENST00000251739 SHPRHQ149N8 1683 aa15.76■□□□□ 0.11
VPS50-201ENST00000251739 DCCP43146 1447 aa15.75■□□□□ 0.11
VPS50-201ENST00000251739 JCADQ9P266 1359 aa15.74■□□□□ 0.11
VPS50-201ENST00000251739 HFM1A2PYH4 1435 aa15.73■□□□□ 0.11
VPS50-201ENST00000251739 NALCNQ8IZF0 1738 aa15.72■□□□□ 0.11
VPS50-201ENST00000251739 C19orf44Q9H6X5 657 aa15.72■□□□□ 0.11
VPS50-201ENST00000251739 NHSL1Q5SYE7 1610 aa15.72■□□□□ 0.11
VPS50-201ENST00000251739 LRP6O75581 1613 aa15.71■□□□□ 0.11
VPS50-201ENST00000251739 CADPS2Q86UW7 1296 aa15.7■□□□□ 0.1
VPS50-201ENST00000251739 AMOTL2Q9Y2J4 779 aa15.7■□□□□ 0.1
VPS50-201ENST00000251739 METP08581 1390 aa15.7■□□□□ 0.1
VPS50-201ENST00000251739 PPLO60437 1756 aa15.7■□□□□ 0.1
VPS50-201ENST00000251739 PRAG1Q86YV5 1406 aa15.69■□□□□ 0.1
VPS50-201ENST00000251739 POTEAQ6S8J7 498 aa15.69■□□□□ 0.1
VPS50-201ENST00000251739 MST1RQ04912 1400 aa15.68■□□□□ 0.1
VPS50-201ENST00000251739 ASXL1Q8IXJ9 1541 aa15.68■□□□□ 0.1
VPS50-201ENST00000251739 ADGRL3Q9HAR2 1447 aa15.68■□□□□ 0.1
VPS50-201ENST00000251739 ZBTB12Q9Y330 459 aaPredicted RBP15.67■□□□□ 0.1
VPS50-201ENST00000251739 LAMC1P11047 1609 aa15.66■□□□□ 0.1
VPS50-201ENST00000251739 C14orf37Q86TY3 774 aa15.66■□□□□ 0.1
VPS50-201ENST00000251739 ATF3P18847 181 aa15.65■□□□□ 0.1
VPS50-201ENST00000251739 BRINP3Q76B58 766 aa15.65■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms