RNA–Protein interactions for RNA: ENST00000241393.3

CXCR4-201, Transcript of C-X-C motif chemokine receptor 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CXCR4, Length 1,682 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXCR4-201ENST00000241393 NUDT18Q6ZVK8 323 aa12.23□□□□□ -0.45
CXCR4-201ENST00000241393 PCMTD1Q96MG8 357 aaPredicted RBP12.23□□□□□ -0.45
CXCR4-201ENST00000241393 MS4A1P11836 297 aa12.22□□□□□ -0.45
CXCR4-201ENST00000241393 SLC4A5Q9BY07 1137 aa12.22□□□□□ -0.45
CXCR4-201ENST00000241393 PLEKHG3A1L390 1219 aa12.22□□□□□ -0.45
CXCR4-201ENST00000241393 RCCD1A6NED2 376 aa12.22□□□□□ -0.45
CXCR4-201ENST00000241393 ST18O60284 1047 aa12.22□□□□□ -0.45
CXCR4-201ENST00000241393 C14orf37Q86TY3 774 aa12.22□□□□□ -0.45
CXCR4-201ENST00000241393 EYA1Q99502 592 aa12.22□□□□□ -0.45
CXCR4-201ENST00000241393 HDGFP51858 240 aaKnown RBP12.21□□□□□ -0.45
CXCR4-201ENST00000241393 ABCC8Q09428 1581 aa12.21□□□□□ -0.46
CXCR4-201ENST00000241393 ZEB1P37275 1124 aaPredicted RBP12.2□□□□□ -0.46
CXCR4-201ENST00000241393 BEGAINQ9BUH8 593 aa12.2□□□□□ -0.46
CXCR4-201ENST00000241393 REPIN1Q9BWE0 567 aaKnown RBP12.2□□□□□ -0.46
CXCR4-201ENST00000241393 ZBED2Q9BTP6 218 aa12.19□□□□□ -0.46
CXCR4-201ENST00000241393 FAM198AQ9UFP1 575 aa12.19□□□□□ -0.46
CXCR4-201ENST00000241393 ATAD2BQ9ULI0 1458 aa12.19□□□□□ -0.46
CXCR4-201ENST00000241393 SH3D19Q5HYK7 790 aa12.18□□□□□ -0.46
CXCR4-201ENST00000241393 ZNF687Q8N1G0 1237 aa12.18□□□□□ -0.46
CXCR4-201ENST00000241393 RABGEF1Q9UJ41 708 aa12.18□□□□□ -0.46
CXCR4-201ENST00000241393 KIAA1468Q9P260 1216 aa12.17□□□□□ -0.46
CXCR4-201ENST00000241393 PROX2Q3B8N5 592 aa12.16□□□□□ -0.46
CXCR4-201ENST00000241393 FAM163AQ96GL9 167 aaPredicted RBP12.16□□□□□ -0.46
CXCR4-201ENST00000241393 ATP1B4Q9UN42 357 aaPredicted RBP12.16□□□□□ -0.46
CXCR4-201ENST00000241393 NBPF3Q9H094 633 aa12.16□□□□□ -0.46
CXCR4-201ENST00000241393 TMEM134Q9H6X4 195 aa12.16□□□□□ -0.46
CXCR4-201ENST00000241393 FAM205CA6NFA0 338 aa12.15□□□□□ -0.46
CXCR4-201ENST00000241393 PSEN2P49810 448 aa12.15□□□□□ -0.46
CXCR4-201ENST00000241393 WRNQ14191 1432 aaPredicted RBP eCLIP12.14□□□□□ -0.47
CXCR4-201ENST00000241393 SKIV2LQ15477 1246 aaKnown RBP12.14□□□□□ -0.47
CXCR4-201ENST00000241393 NLRP7Q8WX94 980 aa12.14□□□□□ -0.47
CXCR4-201ENST00000241393 MARVELD3Q96A59 401 aa12.13□□□□□ -0.47
CXCR4-201ENST00000241393 BAZ1BQ9UIG0 1483 aaKnown RBP12.13□□□□□ -0.47
CXCR4-201ENST00000241393 TNIKQ9UKE5 1360 aa12.13□□□□□ -0.47
CXCR4-201ENST00000241393 TIMELESSQ9UNS1 1208 aa12.13□□□□□ -0.47
CXCR4-201ENST00000241393 LAPTM4BQ86VI4 370 aa12.12□□□□□ -0.47
CXCR4-201ENST00000241393 NUTM1Q86Y26 1132 aa12.12□□□□□ -0.47
CXCR4-201ENST00000241393 DDX11L8A8MPP1 907 aa12.11□□□□□ -0.47
CXCR4-201ENST00000241393 TK2O00142 265 aa12.1□□□□□ -0.47
CXCR4-201ENST00000241393 NECTIN2Q92692 538 aa12.1□□□□□ -0.47
CXCR4-201ENST00000241393 SOGA1O94964 1423 aa12.1□□□□□ -0.47
CXCR4-201ENST00000241393 FAM98CQ17RN3 349 aaKnown RBP12.1□□□□□ -0.47
CXCR4-201ENST00000241393 RDH13Q8NBN7 331 aa12.1□□□□□ -0.47
CXCR4-201ENST00000241393 CD46P15529 392 aa12.09□□□□□ -0.47
CXCR4-201ENST00000241393 FLIIQ13045 1269 aa12.09□□□□□ -0.47
CXCR4-201ENST00000241393 PPARGC1BQ86YN6 1023 aaKnown RBP12.09□□□□□ -0.47
CXCR4-201ENST00000241393 SMAPO00193 183 aa12.08□□□□□ -0.48
CXCR4-201ENST00000241393 STAC3Q96MF2 364 aa12.08□□□□□ -0.48
CXCR4-201ENST00000241393 VPS9D1Q9Y2B5 631 aa12.08□□□□□ -0.48
CXCR4-201ENST00000241393 HS3ST6Q96QI5 342 aa12.07□□□□□ -0.48
CXCR4-201ENST00000241393 SLF2Q8IX21 1173 aa12.06□□□□□ -0.48
CXCR4-201ENST00000241393 TBC1D2Q9BYX2 928 aa12.06□□□□□ -0.48
CXCR4-201ENST00000241393 AXIN2Q9Y2T1 843 aa12.06□□□□□ -0.48
CXCR4-201ENST00000241393 CEP162Q5TB80 1403 aa12.06□□□□□ -0.48
CXCR4-201ENST00000241393 GOLGA3Q08378 1498 aa12.06□□□□□ -0.48
CXCR4-201ENST00000241393 USP46P62068 366 aa12.06□□□□□ -0.48
CXCR4-201ENST00000241393 DMRTA1Q5VZB9 504 aa12.06□□□□□ -0.48
CXCR4-201ENST00000241393 CLK2P49760 499 aaKnown RBP12.04□□□□□ -0.48
CXCR4-201ENST00000241393 MYSM1Q5VVJ2 828 aa12.04□□□□□ -0.48
CXCR4-201ENST00000241393 HMGXB3Q12766 1538 aa12.04□□□□□ -0.48
CXCR4-201ENST00000241393 KIF21BO75037 1637 aa12.03□□□□□ -0.48
CXCR4-201ENST00000241393 SYNJ1O43426 1573 aa12.03□□□□□ -0.48
CXCR4-201ENST00000241393 C3orf80F5H4A9 247 aa12.03□□□□□ -0.48
CXCR4-201ENST00000241393 MRPL50Q8N5N7 158 aaKnown RBP12.03□□□□□ -0.48
CXCR4-201ENST00000241393 SEPT9Q9UHD8 586 aaPredicted RBP12.03□□□□□ -0.48
CXCR4-201ENST00000241393 NCAPD3P42695 1498 aa12.02□□□□□ -0.49
CXCR4-201ENST00000241393 GJA5P36382 358 aa12.02□□□□□ -0.49
CXCR4-201ENST00000241393 SWT1Q5T5J6 900 aaKnown RBP12.02□□□□□ -0.49
CXCR4-201ENST00000241393 POTEEQ6S8J3 1075 aa12.02□□□□□ -0.49
CXCR4-201ENST00000241393 POLR3EQ9NVU0 708 aa12.02□□□□□ -0.49
CXCR4-201ENST00000241393 CEP164Q9UPV0 1460 aa12.01□□□□□ -0.49
CXCR4-201ENST00000241393 SPIRE2Q8WWL2 714 aa12.01□□□□□ -0.49
CXCR4-201ENST00000241393 LSM11P83369 360 aaKnown RBP eCLIP12□□□□□ -0.49
CXCR4-201ENST00000241393 TUSC1Q2TAM9 212 aa12□□□□□ -0.49
CXCR4-201ENST00000241393 GRIPAP1Q4V328 841 aa12□□□□□ -0.49
CXCR4-201ENST00000241393 RUSC2Q8N2Y8 1516 aa12□□□□□ -0.49
CXCR4-201ENST00000241393 RIC3Q7Z5B4 369 aa12□□□□□ -0.49
CXCR4-201ENST00000241393 GOLGA8CPA6NN73 597 aa11.99□□□□□ -0.49
CXCR4-201ENST00000241393 KDM4AO75164 1064 aa11.99□□□□□ -0.49
CXCR4-201ENST00000241393 GCGRP47871 477 aa11.97□□□□□ -0.49
CXCR4-201ENST00000241393 ADGRD1Q6QNK2 874 aa11.97□□□□□ -0.49
CXCR4-201ENST00000241393 TOP2BQ02880 1626 aa11.97□□□□□ -0.49
CXCR4-201ENST00000241393 SPTLC1O15269 473 aa11.97□□□□□ -0.49
CXCR4-201ENST00000241393 PRR14Q9BWN1 585 aa11.97□□□□□ -0.49
CXCR4-201ENST00000241393 KMT5BQ4FZB7 885 aa11.96□□□□□ -0.5
CXCR4-201ENST00000241393 LRCH3Q96II8 777 aa11.96□□□□□ -0.5
CXCR4-201ENST00000241393 BIVM-ERCC5R4GMW8 1640 aa11.95□□□□□ -0.5
CXCR4-201ENST00000241393 BHMG1C9JSJ3 638 aaPredicted RBP11.95□□□□□ -0.5
CXCR4-201ENST00000241393 SAMD7Q7Z3H4 446 aa11.95□□□□□ -0.5
CXCR4-201ENST00000241393 ZFRQ96KR1 1074 aaKnown RBP11.95□□□□□ -0.5
CXCR4-201ENST00000241393 RNF40O75150 1001 aa11.94□□□□□ -0.5
CXCR4-201ENST00000241393 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.94□□□□□ -0.5
CXCR4-201ENST00000241393 UBTFP17480 764 aaKnown RBP11.94□□□□□ -0.5
CXCR4-201ENST00000241393 TMEM259Q4ZIN3 620 aa11.94□□□□□ -0.5
CXCR4-201ENST00000241393 RSBN1LQ6PCB5 846 aaPredicted RBP11.94□□□□□ -0.5
CXCR4-201ENST00000241393 PROCA1Q8NCQ7 364 aaPredicted RBP11.94□□□□□ -0.5
CXCR4-201ENST00000241393 ANKK1Q8NFD2 765 aa11.94□□□□□ -0.5
CXCR4-201ENST00000241393 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.92□□□□□ -0.5
CXCR4-201ENST00000241393 PRPF38BQ5VTL8 546 aaKnown RBP11.91□□□□□ -0.5
CXCR4-201ENST00000241393 ANKRD13DQ6ZTN6 518 aa11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms