RNA–Protein interactions for RNA: ENST00000239243.6

MSX2-201, Transcript of msh homeobox 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSX2, Length 2,241 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2-201ENST00000239243 PIK3C2BO00750 1634 aa31.85■■■□□ 2.69
MSX2-201ENST00000239243 DISP3Q9P2K9 1392 aa31.84■■■□□ 2.69
MSX2-201ENST00000239243 KIF13AQ9H1H9 1805 aa31.84■■■□□ 2.69
MSX2-201ENST00000239243 SIGLEC1Q9BZZ2 1709 aa31.84■■■□□ 2.69
MSX2-201ENST00000239243 RPGRIP1LQ68CZ1 1315 aa31.84■■■□□ 2.69
MSX2-201ENST00000239243 PPLO60437 1756 aa31.82■■■□□ 2.68
MSX2-201ENST00000239243 AGLP35573 1532 aa31.81■■■□□ 2.68
MSX2-201ENST00000239243 CCDC184Q52MB2 194 aa31.81■■■□□ 2.68
MSX2-201ENST00000239243 SYNMO15061 1565 aa31.81■■■□□ 2.68
MSX2-201ENST00000239243 CHGAP10645 457 aaKnown RBP31.8■■■□□ 2.68
MSX2-201ENST00000239243 ADGRF5Q8IZF2 1346 aa31.8■■■□□ 2.68
MSX2-201ENST00000239243 SLC24A1O60721 1099 aa31.79■■■□□ 2.68
MSX2-201ENST00000239243 HNRNPUQ00839 825 aaKnown RBP eCLIP31.79■■■□□ 2.68
MSX2-201ENST00000239243 CDCA8Q53HL2 280 aa31.77■■■□□ 2.68
MSX2-201ENST00000239243 RALBP1Q15311 655 aa31.76■■■□□ 2.68
MSX2-201ENST00000239243 SETBP1Q9Y6X0 1596 aa31.76■■■□□ 2.68
MSX2-201ENST00000239243 PPP6R1Q9UPN7 881 aa31.76■■■□□ 2.67
MSX2-201ENST00000239243 CFAP70Q5T0N1 1121 aa31.75■■■□□ 2.67
MSX2-201ENST00000239243 SLC52A1Q9NWF4 448 aa31.73■■■□□ 2.67
MSX2-201ENST00000239243 PIK3C2GO75747 1445 aa31.73■■■□□ 2.67
MSX2-201ENST00000239243 PREX1Q8TCU6 1659 aa31.72■■■□□ 2.67
MSX2-201ENST00000239243 FAM9BQ8IZU0 186 aa31.71■■■□□ 2.67
MSX2-201ENST00000239243 MYBBP1AQ9BQG0 1328 aaKnown RBP31.68■■■□□ 2.66
MSX2-201ENST00000239243 ARHGEF40Q8TER5 1519 aa31.68■■■□□ 2.66
MSX2-201ENST00000239243 PER1O15534 1290 aaPredicted RBP31.67■■■□□ 2.66
MSX2-201ENST00000239243 MYO3AQ8NEV4 1616 aa31.67■■■□□ 2.66
MSX2-201ENST00000239243 NEXMIFQ5QGS0 1516 aa31.65■■■□□ 2.66
MSX2-201ENST00000239243 CNGB1Q14028 1251 aaPredicted RBP31.65■■■□□ 2.66
MSX2-201ENST00000239243 BRD4O60885 1362 aaPredicted RBP31.65■■■□□ 2.66
MSX2-201ENST00000239243 C14orf93Q9H972 538 aaKnown RBP31.64■■■□□ 2.66
MSX2-201ENST00000239243 VGFO15240 615 aaPredicted RBP31.64■■■□□ 2.66
MSX2-201ENST00000239243 PARD3Q8TEW0 1356 aa31.64■■■□□ 2.66
MSX2-201ENST00000239243 PANK3Q9H999 370 aa31.63■■■□□ 2.65
MSX2-201ENST00000239243 SBNO2Q9Y2G9 1366 aa31.62■■■□□ 2.65
MSX2-201ENST00000239243 KDM5AP29375 1690 aaKnown RBP31.62■■■□□ 2.65
MSX2-201ENST00000239243 IDI1Q13907 227 aa31.61■■■□□ 2.65
MSX2-201ENST00000239243 TMC1Q8TDI8 760 aa31.61■■■□□ 2.65
MSX2-201ENST00000239243 ZFYVE9O95405 1425 aa31.6■■■□□ 2.65
MSX2-201ENST00000239243 ERVK-7P63135 1459 aa31.59■■■□□ 2.65
MSX2-201ENST00000239243 ADGRB1O14514 1584 aa31.59■■■□□ 2.65
MSX2-201ENST00000239243 ZBED9Q6R2W3 1325 aa31.58■■■□□ 2.65
MSX2-201ENST00000239243 TMEM131LA2VDJ0 1609 aa31.57■■■□□ 2.64
MSX2-201ENST00000239243 CLTCQ00610 1675 aaKnown RBP31.56■■■□□ 2.64
MSX2-201ENST00000239243 SUPT16HQ9Y5B9 1047 aaKnown RBP31.56■■■□□ 2.64
MSX2-201ENST00000239243 NLRP13Q86W25 1043 aa31.55■■■□□ 2.64
MSX2-201ENST00000239243 PNISRQ8TF01 805 aaKnown RBP31.53■■■□□ 2.64
MSX2-201ENST00000239243 MYOM1P52179 1685 aa31.53■■■□□ 2.64
MSX2-201ENST00000239243 CENPJQ9HC77 1338 aaPredicted RBP31.52■■■□□ 2.64
MSX2-201ENST00000239243 MYO5BQ9ULV0 1848 aa31.5■■■□□ 2.63
MSX2-201ENST00000239243 SPATA31D1Q6ZQQ2 1576 aa31.49■■■□□ 2.63
MSX2-201ENST00000239243 NEFLP07196 543 aa31.48■■■□□ 2.63
MSX2-201ENST00000239243 KNSTRNQ9Y448 316 aa31.48■■■□□ 2.63
MSX2-201ENST00000239243 FBXO31Q5XUX0 539 aaPredicted RBP31.47■■■□□ 2.63
MSX2-201ENST00000239243 LRPPRCP42704 1394 aaKnown RBP31.46■■■□□ 2.63
MSX2-201ENST00000239243 QRICH2Q9H0J4 1663 aa31.46■■■□□ 2.63
MSX2-201ENST00000239243 CC2D1BQ5T0F9 858 aaKnown RBP31.45■■■□□ 2.62
MSX2-201ENST00000239243 TRAK1Q9UPV9 953 aa31.44■■■□□ 2.62
MSX2-201ENST00000239243 ASXL1Q8IXJ9 1541 aa31.42■■■□□ 2.62
MSX2-201ENST00000239243 NPC1L1Q9UHC9 1359 aa31.42■■■□□ 2.62
MSX2-201ENST00000239243 TMEM132EQ6IEE7 984 aa31.4■■■□□ 2.62
MSX2-201ENST00000239243 ESF1Q9H501 851 aaKnown RBP31.4■■■□□ 2.62
MSX2-201ENST00000239243 NUTM2DQ5VT03 806 aaPredicted RBP31.4■■■□□ 2.62
MSX2-201ENST00000239243 MLECQ14165 292 aa31.39■■■□□ 2.62
MSX2-201ENST00000239243 STAG3Q9UJ98 1225 aa31.39■■■□□ 2.62
MSX2-201ENST00000239243 ARHGEF28Q8N1W1 1705 aaKnown RBP31.39■■■□□ 2.62
MSX2-201ENST00000239243 AMER1Q5JTC6 1135 aaPredicted RBP31.36■■■□□ 2.61
MSX2-201ENST00000239243 FKBP8Q14318 412 aa31.36■■■□□ 2.61
MSX2-201ENST00000239243 INSRP06213 1382 aa31.33■■■□□ 2.61
MSX2-201ENST00000239243 PUS7Q96PZ0 661 aaKnown RBP31.32■■■□□ 2.6
MSX2-201ENST00000239243 A2ML1A8K2U0 1454 aa31.32■■■□□ 2.6
MSX2-201ENST00000239243 ZMYM3Q14202 1370 aa31.31■■■□□ 2.6
MSX2-201ENST00000239243 EVC2Q86UK5 1308 aa31.26■■■□□ 2.6
MSX2-201ENST00000239243 ALKQ9UM73 1620 aa31.25■■■□□ 2.59
MSX2-201ENST00000239243 PELP1Q8IZL8 1130 aaKnown RBP31.25■■■□□ 2.59
MSX2-201ENST00000239243 SMG6Q86US8 1419 aaKnown RBP31.24■■■□□ 2.59
MSX2-201ENST00000239243 PPP2R1AP30153 589 aa31.23■■■□□ 2.59
MSX2-201ENST00000239243 RIMS2Q9UQ26 1411 aa31.23■■■□□ 2.59
MSX2-201ENST00000239243 YTHDC2Q9H6S0 1430 aaKnown RBP31.22■■■□□ 2.59
MSX2-201ENST00000239243 TULP4Q9NRJ4 1543 aa31.21■■■□□ 2.59
MSX2-201ENST00000239243 PTPRMP28827 1452 aa31.19■■■□□ 2.58
MSX2-201ENST00000239243 ABCF1Q8NE71 845 aaKnown RBP eCLIP31.18■■■□□ 2.58
MSX2-201ENST00000239243 CARD14Q9BXL6 1004 aa31.18■■■□□ 2.58
MSX2-201ENST00000239243 BLMP54132 1417 aaPredicted RBP31.17■■■□□ 2.58
MSX2-201ENST00000239243 TNRQ92752 1358 aa31.17■■■□□ 2.58
MSX2-201ENST00000239243 NUDCQ9Y266 331 aa31.17■■■□□ 2.58
MSX2-201ENST00000239243 STK26Q9P289 416 aa31.15■■■□□ 2.58
MSX2-201ENST00000239243 USP32Q8NFA0 1604 aa31.15■■■□□ 2.58
MSX2-201ENST00000239243 HDGFP51858 240 aaKnown RBP31.14■■■□□ 2.58
MSX2-201ENST00000239243 NINLQ9Y2I6 1382 aa31.14■■■□□ 2.58
MSX2-201ENST00000239243 NSD3Q9BZ95 1437 aa31.12■■■□□ 2.57
MSX2-201ENST00000239243 ERICH6BQ5W0A0 696 aa31.12■■■□□ 2.57
MSX2-201ENST00000239243 DLC1Q96QB1 1528 aa31.12■■■□□ 2.57
MSX2-201ENST00000239243 SLC12A5Q9H2X9 1139 aa31.11■■■□□ 2.57
MSX2-201ENST00000239243 SETD1AO15047 1707 aaKnown RBP31.11■■■□□ 2.57
MSX2-201ENST00000239243 POGKQ9P215 609 aa31.1■■■□□ 2.57
MSX2-201ENST00000239243 ANKRD36BQ8N2N9 1353 aa31.09■■■□□ 2.57
MSX2-201ENST00000239243 BCANQ96GW7 911 aa31.09■■■□□ 2.57
MSX2-201ENST00000239243 PDE3BQ13370 1112 aa31.08■■■□□ 2.57
MSX2-201ENST00000239243 WDR43Q15061 677 aaKnown RBP eCLIP31.08■■■□□ 2.57
MSX2-201ENST00000239243 PRAM1Q96QH2 718 aa31.08■■■□□ 2.57
Retrieved 100 of 20,778 RNA–protein pairs in 9.7 ms