RNA–Protein interactions for RNA: ENST00000233146.6

MSH2-201, Transcript of mutS homolog 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH2, Length 3,307 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2-201ENST00000233146 NCBP3Q53F19 620 aaKnown RBP16.31■□□□□ 0.2
MSH2-201ENST00000233146 DNTTIP2Q5QJE6 756 aaKnown RBP16.31■□□□□ 0.2
MSH2-201ENST00000233146 CGNQ9P2M7 1197 aaKnown RBP16.31■□□□□ 0.2
MSH2-201ENST00000233146 MBD5Q9P267 1494 aa16.31■□□□□ 0.2
MSH2-201ENST00000233146 SLC20A2Q08357 652 aa16.29■□□□□ 0.2
MSH2-201ENST00000233146 CIZ1Q9ULV3 898 aaPredicted RBP16.29■□□□□ 0.2
MSH2-201ENST00000233146 RAB3GAP1Q15042 981 aa16.27■□□□□ 0.2
MSH2-201ENST00000233146 GTF2F1P35269 517 aaKnown RBP eCLIP16.27■□□□□ 0.2
MSH2-201ENST00000233146 IRX5P78411 483 aaPredicted RBP16.27■□□□□ 0.2
MSH2-201ENST00000233146 KIF14Q15058 1648 aa16.26■□□□□ 0.19
MSH2-201ENST00000233146 HSCBQ8IWL3 235 aa16.26■□□□□ 0.19
MSH2-201ENST00000233146 C22orf23Q9BZE7 217 aa16.26■□□□□ 0.19
MSH2-201ENST00000233146 RBM25P49756 843 aaKnown RBP16.25■□□□□ 0.19
MSH2-201ENST00000233146 ZNF445P59923 1031 aa16.25■□□□□ 0.19
MSH2-201ENST00000233146 FGD5Q6ZNL6 1462 aa16.25■□□□□ 0.19
MSH2-201ENST00000233146 P3H3Q8IVL6 736 aa16.25■□□□□ 0.19
MSH2-201ENST00000233146 SECISBP2LQ93073 1101 aaKnown RBP16.25■□□□□ 0.19
MSH2-201ENST00000233146 SMC5Q8IY18 1101 aa16.24■□□□□ 0.19
MSH2-201ENST00000233146 JARID2Q92833 1246 aaPredicted RBP16.24■□□□□ 0.19
MSH2-201ENST00000233146 IGF1RP08069 1367 aa16.24■□□□□ 0.19
MSH2-201ENST00000233146 HSP90AB1P08238 724 aaKnown RBP16.24■□□□□ 0.19
MSH2-201ENST00000233146 KLHL40Q2TBA0 621 aa16.24■□□□□ 0.19
MSH2-201ENST00000233146 MTUS2Q5JR59 1369 aa16.24■□□□□ 0.19
MSH2-201ENST00000233146 ZNF521Q96K83 1311 aa16.24■□□□□ 0.19
MSH2-201ENST00000233146 RGS22Q8NE09 1264 aa16.23■□□□□ 0.19
MSH2-201ENST00000233146 PRIMPOLQ96LW4 560 aa16.23■□□□□ 0.19
MSH2-201ENST00000233146 CHIC2Q9UKJ5 165 aa16.23■□□□□ 0.19
MSH2-201ENST00000233146 FHOD3Q2V2M9 1422 aa16.23■□□□□ 0.19
MSH2-201ENST00000233146 PLEKHH1Q9ULM0 1364 aa16.23■□□□□ 0.19
MSH2-201ENST00000233146 IRX3P78415 501 aaPredicted RBP16.23■□□□□ 0.19
MSH2-201ENST00000233146 KIF21AQ7Z4S6 1674 aa16.23■□□□□ 0.19
MSH2-201ENST00000233146 NBPF1Q3BBV0 1214 aa16.22■□□□□ 0.19
MSH2-201ENST00000233146 ZNF608Q9ULD9 1512 aaPredicted RBP16.22■□□□□ 0.19
MSH2-201ENST00000233146 CGNL1Q0VF96 1302 aa16.22■□□□□ 0.19
MSH2-201ENST00000233146 BRD2P25440 801 aaKnown RBP16.22■□□□□ 0.19
MSH2-201ENST00000233146 TSC1Q92574 1164 aa16.22■□□□□ 0.19
MSH2-201ENST00000233146 CLUAP1Q96AJ1 413 aa16.22■□□□□ 0.19
MSH2-201ENST00000233146 HMGN5P82970 282 aaKnown RBP16.21■□□□□ 0.19
MSH2-201ENST00000233146 DNAJC2Q99543 621 aaKnown RBP16.21■□□□□ 0.19
MSH2-201ENST00000233146 CCDC39Q9UFE4 941 aa16.21■□□□□ 0.19
MSH2-201ENST00000233146 GOLGA2Q08379 1002 aa16.2■□□□□ 0.18
MSH2-201ENST00000233146 RBSNQ9H1K0 784 aa16.2■□□□□ 0.18
MSH2-201ENST00000233146 ARHGAP31Q2M1Z3 1444 aa16.2■□□□□ 0.18
MSH2-201ENST00000233146 IGSF3O75054 1194 aa16.2■□□□□ 0.18
MSH2-201ENST00000233146 CLEC17AQ6ZS10 378 aa16.2■□□□□ 0.18
MSH2-201ENST00000233146 SNX21Q969T3 373 aa16.2■□□□□ 0.18
MSH2-201ENST00000233146 SPDYE4A6NLX3 237 aa16.19■□□□□ 0.18
MSH2-201ENST00000233146 TCOF1Q13428 1488 aaKnown RBP16.19■□□□□ 0.18
MSH2-201ENST00000233146 ZNF771Q7L3S4 317 aaPredicted RBP16.19■□□□□ 0.18
MSH2-201ENST00000233146 TRMT2AQ8IZ69 625 aaKnown RBP16.19■□□□□ 0.18
MSH2-201ENST00000233146 KCNJ4P48050 445 aa16.18■□□□□ 0.18
MSH2-201ENST00000233146 SLFN5Q08AF3 891 aa16.18■□□□□ 0.18
MSH2-201ENST00000233146 DDX49Q9Y6V7 483 aaKnown RBP16.18■□□□□ 0.18
MSH2-201ENST00000233146 PER1O15534 1290 aaPredicted RBP16.18■□□□□ 0.18
MSH2-201ENST00000233146 PDE3AQ14432 1141 aa16.18■□□□□ 0.18
MSH2-201ENST00000233146 CARMIL1Q5VZK9 1371 aa16.17■□□□□ 0.18
MSH2-201ENST00000233146 BCAR3O75815 825 aa16.17■□□□□ 0.18
MSH2-201ENST00000233146 AMER1Q5JTC6 1135 aaPredicted RBP16.17■□□□□ 0.18
MSH2-201ENST00000233146 SUPT6HQ7KZ85 1726 aaKnown RBP16.17■□□□□ 0.18
MSH2-201ENST00000233146 RALGAPBQ86X10 1494 aa16.16■□□□□ 0.18
MSH2-201ENST00000233146 EFCAB5A4FU69 1503 aa16.16■□□□□ 0.18
MSH2-201ENST00000233146 GOLGA6L22H0YM25 854 aa16.16■□□□□ 0.18
MSH2-201ENST00000233146 ADAMTS8Q9UP79 889 aa16.16■□□□□ 0.18
MSH2-201ENST00000233146 PDZRN3Q9UPQ7 1066 aa16.16■□□□□ 0.18
MSH2-201ENST00000233146 KIAA2012Q0VF49 1180 aa16.16■□□□□ 0.18
MSH2-201ENST00000233146 PDCL2Q8N4E4 241 aa16.16■□□□□ 0.18
MSH2-201ENST00000233146 KIF3AQ9Y496 699 aa16.16■□□□□ 0.18
MSH2-201ENST00000233146 MFAP1P55081 439 aaKnown RBP16.15■□□□□ 0.18
MSH2-201ENST00000233146 E9PSI1 815 aa16.15■□□□□ 0.18
MSH2-201ENST00000233146 ZSCAN23Q3MJ62 389 aa16.15■□□□□ 0.18
MSH2-201ENST00000233146 PMFBP1Q8TBY8 1022 aa16.15■□□□□ 0.18
MSH2-201ENST00000233146 CHMP4AQ9BY43 222 aa16.15■□□□□ 0.18
MSH2-201ENST00000233146 SNAPC4Q5SXM2 1469 aa16.14■□□□□ 0.17
MSH2-201ENST00000233146 BCL2L12Q9HB09 334 aa16.14■□□□□ 0.17
MSH2-201ENST00000233146 UHRF1BP1Q6BDS2 1440 aa16.14■□□□□ 0.17
MSH2-201ENST00000233146 GABPB1Q06547 395 aaPredicted RBP16.14■□□□□ 0.17
MSH2-201ENST00000233146 CFTRP13569 1480 aa16.14■□□□□ 0.17
MSH2-201ENST00000233146 NKTRP30414 1462 aaKnown RBP16.13■□□□□ 0.17
MSH2-201ENST00000233146 NINLQ9Y2I6 1382 aa16.13■□□□□ 0.17
MSH2-201ENST00000233146 ST20-MTHFSA0A0A6YYL1 179 aa16.13■□□□□ 0.17
MSH2-201ENST00000233146 MAPK8IP2Q13387 824 aaPredicted RBP16.13■□□□□ 0.17
MSH2-201ENST00000233146 FEZ1Q99689 392 aa16.13■□□□□ 0.17
MSH2-201ENST00000233146 CLASP1Q7Z460 1538 aa16.13■□□□□ 0.17
MSH2-201ENST00000233146 UGGT2Q9NYU1 1516 aa16.13■□□□□ 0.17
MSH2-201ENST00000233146 GAPVD1Q14C86 1478 aa16.13■□□□□ 0.17
MSH2-201ENST00000233146 KIAA1107Q9UPP5 1409 aa16.13■□□□□ 0.17
MSH2-201ENST00000233146 ARHGEF11O15085 1522 aa16.13■□□□□ 0.17
MSH2-201ENST00000233146 EPRSP07814 1512 aaKnown RBP16.13■□□□□ 0.17
MSH2-201ENST00000233146 U2AF2P26368 475 aaKnown RBP eCLIP16.12■□□□□ 0.17
MSH2-201ENST00000233146 PRIM1P49642 420 aaKnown RBP16.12■□□□□ 0.17
MSH2-201ENST00000233146 CARD11Q9BXL7 1154 aa16.12■□□□□ 0.17
MSH2-201ENST00000233146 RNF216Q9NWF9 866 aaPredicted RBP16.11■□□□□ 0.17
MSH2-201ENST00000233146 TULP2O00295 520 aa16.11■□□□□ 0.17
MSH2-201ENST00000233146 BAG4O95429 457 aaKnown RBP16.11■□□□□ 0.17
MSH2-201ENST00000233146 ANKRD7Q92527 254 aa16.11■□□□□ 0.17
MSH2-201ENST00000233146 SLC4A1APQ9BWU0 796 aaKnown RBP16.11■□□□□ 0.17
MSH2-201ENST00000233146 OGFRQ9NZT2 677 aa16.11■□□□□ 0.17
MSH2-201ENST00000233146 SLFN14P0C7P3 912 aa16.1■□□□□ 0.17
MSH2-201ENST00000233146 SSFA2P28290 1259 aa16.1■□□□□ 0.17
MSH2-201ENST00000233146 LRRIQ1Q96JM4 1722 aa16.1■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms