RNA–Protein interactions for RNA: ENST00000228251.8

YBX3-201, Transcript of Y-box binding protein 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene YBX3, Length 1,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-201ENST00000228251 RAPGEF3O95398 923 aa26.15■■□□□ 1.78
YBX3-201ENST00000228251 BRD4O60885 1362 aaPredicted RBP26.15■■□□□ 1.78
YBX3-201ENST00000228251 FKBP8Q14318 412 aa26.15■■□□□ 1.78
YBX3-201ENST00000228251 TMF1P82094 1093 aa26.14■■□□□ 1.78
YBX3-201ENST00000228251 CFAP65Q6ZU64 1925 aaKnown RBP26.14■■□□□ 1.77
YBX3-201ENST00000228251 MYBBP1AQ9BQG0 1328 aaKnown RBP26.13■■□□□ 1.77
YBX3-201ENST00000228251 NOS1P29475 1434 aa26.13■■□□□ 1.77
YBX3-201ENST00000228251 PNISRQ8TF01 805 aaKnown RBP26.13■■□□□ 1.77
YBX3-201ENST00000228251 MYOM1P52179 1685 aa26.13■■□□□ 1.77
YBX3-201ENST00000228251 LRPPRCP42704 1394 aaKnown RBP26.13■■□□□ 1.77
YBX3-201ENST00000228251 MYO3AQ8NEV4 1616 aa26.13■■□□□ 1.77
YBX3-201ENST00000228251 WASHC2CQ9Y4E1 1318 aa26.13■■□□□ 1.77
YBX3-201ENST00000228251 SYNMO15061 1565 aa26.11■■□□□ 1.77
YBX3-201ENST00000228251 SETBP1Q9Y6X0 1596 aa26.11■■□□□ 1.77
YBX3-201ENST00000228251 CYB5RLQ6IPT4 315 aa26.1■■□□□ 1.77
YBX3-201ENST00000228251 ARHGAP31Q2M1Z3 1444 aa26.09■■□□□ 1.77
YBX3-201ENST00000228251 YEATS2Q9ULM3 1422 aa26.09■■□□□ 1.77
YBX3-201ENST00000228251 ADGRF5Q8IZF2 1346 aa26.09■■□□□ 1.77
YBX3-201ENST00000228251 NEFLP07196 543 aa26.06■■□□□ 1.76
YBX3-201ENST00000228251 GGT6Q6P531 493 aa26.06■■□□□ 1.76
YBX3-201ENST00000228251 EIF3AQ14152 1382 aaKnown RBP26.04■■□□□ 1.76
YBX3-201ENST00000228251 KDM5AP29375 1690 aaKnown RBP26.04■■□□□ 1.76
YBX3-201ENST00000228251 PIK3C2GO75747 1445 aa26.04■■□□□ 1.76
YBX3-201ENST00000228251 CNGB1Q14028 1251 aaPredicted RBP26.02■■□□□ 1.76
YBX3-201ENST00000228251 TMC1Q8TDI8 760 aa26.02■■□□□ 1.76
YBX3-201ENST00000228251 PANK3Q9H999 370 aa26.02■■□□□ 1.76
YBX3-201ENST00000228251 CFAP70Q5T0N1 1121 aa26.02■■□□□ 1.76
YBX3-201ENST00000228251 REREQ9P2R6 1566 aa26.02■■□□□ 1.76
YBX3-201ENST00000228251 ADGRB1O14514 1584 aa26■■□□□ 1.75
YBX3-201ENST00000228251 NLRP13Q86W25 1043 aa26■■□□□ 1.75
YBX3-201ENST00000228251 ERVK-7P63135 1459 aa25.99■■□□□ 1.75
YBX3-201ENST00000228251 SMG6Q86US8 1419 aaKnown RBP25.98■■□□□ 1.75
YBX3-201ENST00000228251 SBNO2Q9Y2G9 1366 aa25.98■■□□□ 1.75
YBX3-201ENST00000228251 PREX1Q8TCU6 1659 aa25.98■■□□□ 1.75
YBX3-201ENST00000228251 NEXMIFQ5QGS0 1516 aa25.97■■□□□ 1.75
YBX3-201ENST00000228251 RPGRIP1LQ68CZ1 1315 aa25.97■■□□□ 1.75
YBX3-201ENST00000228251 TSPOAP1O95153 1857 aa25.97■■□□□ 1.75
YBX3-201ENST00000228251 CDCA8Q53HL2 280 aa25.96■■□□□ 1.75
YBX3-201ENST00000228251 BCANQ96GW7 911 aa25.95■■□□□ 1.74
YBX3-201ENST00000228251 INSRP06213 1382 aa25.94■■□□□ 1.74
YBX3-201ENST00000228251 FAM69CQ0P6D2 419 aa25.92■■□□□ 1.74
YBX3-201ENST00000228251 AGLP35573 1532 aa25.92■■□□□ 1.74
YBX3-201ENST00000228251 C14orf93Q9H972 538 aaKnown RBP25.92■■□□□ 1.74
YBX3-201ENST00000228251 MYO5BQ9ULV0 1848 aa25.91■■□□□ 1.74
YBX3-201ENST00000228251 KIF13AQ9H1H9 1805 aa25.91■■□□□ 1.74
YBX3-201ENST00000228251 ASXL1Q8IXJ9 1541 aa25.91■■□□□ 1.74
YBX3-201ENST00000228251 NPC1L1Q9UHC9 1359 aa25.9■■□□□ 1.74
YBX3-201ENST00000228251 SLC24A1O60721 1099 aa25.9■■□□□ 1.74
YBX3-201ENST00000228251 QRICH2Q9H0J4 1663 aa25.9■■□□□ 1.74
YBX3-201ENST00000228251 TMEM131LA2VDJ0 1609 aa25.89■■□□□ 1.74
YBX3-201ENST00000228251 AMER1Q5JTC6 1135 aaPredicted RBP25.88■■□□□ 1.73
YBX3-201ENST00000228251 ERICH6BQ5W0A0 696 aa25.88■■□□□ 1.73
YBX3-201ENST00000228251 CC2D1BQ5T0F9 858 aaKnown RBP25.87■■□□□ 1.73
YBX3-201ENST00000228251 ZFYVE9O95405 1425 aa25.87■■□□□ 1.73
YBX3-201ENST00000228251 BLMP54132 1417 aaPredicted RBP25.86■■□□□ 1.73
YBX3-201ENST00000228251 ARHGEF28Q8N1W1 1705 aaKnown RBP25.85■■□□□ 1.73
YBX3-201ENST00000228251 CHGAP10645 457 aaKnown RBP25.84■■□□□ 1.73
YBX3-201ENST00000228251 NUDCQ9Y266 331 aa25.84■■□□□ 1.73
YBX3-201ENST00000228251 RNF123Q5XPI4 1314 aa25.82■■□□□ 1.72
YBX3-201ENST00000228251 SLC52A1Q9NWF4 448 aa25.81■■□□□ 1.72
YBX3-201ENST00000228251 IDI1Q13907 227 aa25.8■■□□□ 1.72
YBX3-201ENST00000228251 CENPJQ9HC77 1338 aaPredicted RBP25.8■■□□□ 1.72
YBX3-201ENST00000228251 KNSTRNQ9Y448 316 aa25.79■■□□□ 1.72
YBX3-201ENST00000228251 ARHGEF40Q8TER5 1519 aa25.78■■□□□ 1.72
YBX3-201ENST00000228251 TSHZ2Q9NRE2 1034 aa25.77■■□□□ 1.72
YBX3-201ENST00000228251 CLTCQ00610 1675 aaKnown RBP25.76■■□□□ 1.71
YBX3-201ENST00000228251 IRX6P78412 446 aaPredicted RBP25.76■■□□□ 1.71
YBX3-201ENST00000228251 VGFO15240 615 aaPredicted RBP25.75■■□□□ 1.71
YBX3-201ENST00000228251 PPP2R1AP30153 589 aa25.75■■□□□ 1.71
YBX3-201ENST00000228251 PPP6R1Q9UPN7 881 aa25.74■■□□□ 1.71
YBX3-201ENST00000228251 SPATA31D1Q6ZQQ2 1576 aa25.73■■□□□ 1.71
YBX3-201ENST00000228251 USP32Q8NFA0 1604 aa25.72■■□□□ 1.71
YBX3-201ENST00000228251 TULP4Q9NRJ4 1543 aa25.71■■□□□ 1.71
YBX3-201ENST00000228251 TMEM132EQ6IEE7 984 aa25.71■■□□□ 1.71
YBX3-201ENST00000228251 TRAK1Q9UPV9 953 aa25.71■■□□□ 1.71
YBX3-201ENST00000228251 CARD14Q9BXL6 1004 aa25.7■■□□□ 1.7
YBX3-201ENST00000228251 PPP4R2Q9NY27 417 aa25.68■■□□□ 1.7
YBX3-201ENST00000228251 PDE3BQ13370 1112 aa25.67■■□□□ 1.7
YBX3-201ENST00000228251 PUS7Q96PZ0 661 aaKnown RBP25.67■■□□□ 1.7
YBX3-201ENST00000228251 SENP3-EIF4A1A0A087X0R7 540 aa25.66■■□□□ 1.7
YBX3-201ENST00000228251 FBXO31Q5XUX0 539 aaPredicted RBP25.65■■□□□ 1.7
YBX3-201ENST00000228251 NUTM2DQ5VT03 806 aaPredicted RBP25.63■■□□□ 1.69
YBX3-201ENST00000228251 PTPRMP28827 1452 aa25.63■■□□□ 1.69
YBX3-201ENST00000228251 SETD1AO15047 1707 aaKnown RBP25.62■■□□□ 1.69
YBX3-201ENST00000228251 ALKQ9UM73 1620 aa25.61■■□□□ 1.69
YBX3-201ENST00000228251 ADAMTS8Q9UP79 889 aa25.61■■□□□ 1.69
YBX3-201ENST00000228251 A2ML1A8K2U0 1454 aa25.6■■□□□ 1.69
YBX3-201ENST00000228251 NSD3Q9BZ95 1437 aa25.57■■□□□ 1.68
YBX3-201ENST00000228251 YTHDC2Q9H6S0 1430 aaKnown RBP25.55■■□□□ 1.68
YBX3-201ENST00000228251 SHPRHQ149N8 1683 aa25.55■■□□□ 1.68
YBX3-201ENST00000228251 EVC2Q86UK5 1308 aa25.54■■□□□ 1.68
YBX3-201ENST00000228251 SLC12A5Q9H2X9 1139 aa25.54■■□□□ 1.68
YBX3-201ENST00000228251 ZNF521Q96K83 1311 aa25.52■■□□□ 1.68
YBX3-201ENST00000228251 CDCA7LQ96GN5 454 aa25.51■■□□□ 1.67
YBX3-201ENST00000228251 POLR3AO14802 1390 aaPredicted RBP25.51■■□□□ 1.67
YBX3-201ENST00000228251 ANKRD36BQ8N2N9 1353 aa25.51■■□□□ 1.67
YBX3-201ENST00000228251 PLEKHH1Q9ULM0 1364 aa25.5■■□□□ 1.67
YBX3-201ENST00000228251 NRXN3Q9Y4C0 1643 aa25.5■■□□□ 1.67
YBX3-201ENST00000228251 WDR43Q15061 677 aaKnown RBP eCLIP25.5■■□□□ 1.67
YBX3-201ENST00000228251 SALL2Q9Y467 1007 aaPredicted RBP25.5■■□□□ 1.67
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms