RNA–Protein interactions for RNA: ENST00000219084.10

CHD9-201, Transcript of chromodomain helicase DNA binding protein 9, humanhuman

TSL 1 (best)

Gene CHD9, Length 8,739 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9-201ENST00000219084 NOC3LQ8WTT2 800 aaKnown RBP5.41□□□□□ -1.54
CHD9-201ENST00000219084 RTN4Q9NQC3 1192 aaKnown RBP5.41□□□□□ -1.54
CHD9-201ENST00000219084 RUSC2Q8N2Y8 1516 aa5.41□□□□□ -1.54
CHD9-201ENST00000219084 GOLGA6L19H0YKK7 550 aa5.41□□□□□ -1.54
CHD9-201ENST00000219084 SLKQ9H2G2 1235 aaPredicted RBP5.41□□□□□ -1.54
CHD9-201ENST00000219084 ANKRD50Q9ULJ7 1429 aa5.41□□□□□ -1.54
CHD9-201ENST00000219084 TSR1Q2NL82 804 aaKnown RBP5.41□□□□□ -1.54
CHD9-201ENST00000219084 NAP1L2Q9ULW6 460 aaPredicted RBP5.41□□□□□ -1.54
CHD9-201ENST00000219084 FAM135AQ9P2D6 1515 aa5.41□□□□□ -1.54
CHD9-201ENST00000219084 KIAA1107Q9UPP5 1409 aa5.4□□□□□ -1.54
CHD9-201ENST00000219084 IFT140Q96RY7 1462 aa5.4□□□□□ -1.54
CHD9-201ENST00000219084 WDR97A6NE52 1622 aa5.4□□□□□ -1.54
CHD9-201ENST00000219084 API5Q9BZZ5 524 aaKnown RBP5.4□□□□□ -1.54
CHD9-201ENST00000219084 NOM1Q5C9Z4 860 aaKnown RBP5.4□□□□□ -1.54
CHD9-201ENST00000219084 RNF20Q5VTR2 975 aa5.4□□□□□ -1.54
CHD9-201ENST00000219084 AKNAQ7Z591 1439 aa5.4□□□□□ -1.54
CHD9-201ENST00000219084 A0A0U1RQG5 324 aaPredicted RBP5.4□□□□□ -1.55
CHD9-201ENST00000219084 HSP90AB4PQ58FF6 505 aa5.4□□□□□ -1.55
CHD9-201ENST00000219084 INTS3Q68E01 1043 aaKnown RBP5.4□□□□□ -1.55
CHD9-201ENST00000219084 ACBD3Q9H3P7 528 aa5.4□□□□□ -1.55
CHD9-201ENST00000219084 IGF1RP08069 1367 aa5.4□□□□□ -1.55
CHD9-201ENST00000219084 TRIM6-TRIM34B2RNG4 842 aa5.4□□□□□ -1.55
CHD9-201ENST00000219084 MRE11P49959 708 aa5.4□□□□□ -1.55
CHD9-201ENST00000219084 RUNDC1Q96C34 613 aa5.4□□□□□ -1.55
CHD9-201ENST00000219084 NAT10Q9H0A0 1025 aaKnown RBP5.4□□□□□ -1.55
CHD9-201ENST00000219084 CCDC39Q9UFE4 941 aa5.4□□□□□ -1.55
CHD9-201ENST00000219084 GCC2Q8IWJ2 1684 aa5.4□□□□□ -1.55
CHD9-201ENST00000219084 TDRD9Q8NDG6 1382 aaKnown RBP5.39□□□□□ -1.55
CHD9-201ENST00000219084 MRC2Q9UBG0 1479 aa5.39□□□□□ -1.55
CHD9-201ENST00000219084 HSP90B1P14625 803 aaKnown RBP5.39□□□□□ -1.55
CHD9-201ENST00000219084 ANKRD20A12PQ8NF67 263 aa5.39□□□□□ -1.55
CHD9-201ENST00000219084 MBD3O95983 291 aa5.39□□□□□ -1.55
CHD9-201ENST00000219084 HMGN5P82970 282 aaKnown RBP5.39□□□□□ -1.55
CHD9-201ENST00000219084 DIAPH3Q9NSV4 1193 aa5.39□□□□□ -1.55
CHD9-201ENST00000219084 ARGLU1Q9NWB6 273 aaPredicted RBP5.39□□□□□ -1.55
CHD9-201ENST00000219084 EID1Q9Y6B2 187 aa5.39□□□□□ -1.55
CHD9-201ENST00000219084 ZKSCAN1P17029 563 aaPredicted RBP5.39□□□□□ -1.55
CHD9-201ENST00000219084 CAVIN1Q6NZI2 390 aaKnown RBP5.39□□□□□ -1.55
CHD9-201ENST00000219084 PTPRGP23470 1445 aa5.39□□□□□ -1.55
CHD9-201ENST00000219084 DDX49Q9Y6V7 483 aaKnown RBP5.38□□□□□ -1.55
CHD9-201ENST00000219084 ABCA10Q8WWZ4 1543 aa5.38□□□□□ -1.55
CHD9-201ENST00000219084 ZBTB7CA1YPR0 619 aa5.38□□□□□ -1.55
CHD9-201ENST00000219084 PANK3Q9H999 370 aa5.38□□□□□ -1.55
CHD9-201ENST00000219084 C9orf84Q5VXU9 1444 aa5.38□□□□□ -1.55
CHD9-201ENST00000219084 H3BQV1 296 aa5.38□□□□□ -1.55
CHD9-201ENST00000219084 IFFO2Q5TF58 517 aa5.38□□□□□ -1.55
CHD9-201ENST00000219084 ZNF428Q96B54 188 aa5.38□□□□□ -1.55
CHD9-201ENST00000219084 PDE3AQ14432 1141 aa5.38□□□□□ -1.55
CHD9-201ENST00000219084 ST20-MTHFSA0A0A6YYL1 179 aa5.38□□□□□ -1.55
CHD9-201ENST00000219084 NPHP1O15259 732 aa5.38□□□□□ -1.55
CHD9-201ENST00000219084 GZF1Q9H116 711 aaPredicted RBP5.38□□□□□ -1.55
CHD9-201ENST00000219084 TAF3Q5VWG9 929 aa5.38□□□□□ -1.55
CHD9-201ENST00000219084 DZIP1LQ8IYY4 767 aaKnown RBP5.38□□□□□ -1.55
CHD9-201ENST00000219084 HIP1O00291 1037 aa5.38□□□□□ -1.55
CHD9-201ENST00000219084 CPLX2Q6PUV4 134 aaKnown RBP5.38□□□□□ -1.55
CHD9-201ENST00000219084 CWC15Q9P013 229 aaKnown RBP5.38□□□□□ -1.55
CHD9-201ENST00000219084 TOPBP1Q92547 1522 aa5.38□□□□□ -1.55
CHD9-201ENST00000219084 ERC2O15083 957 aa5.37□□□□□ -1.55
CHD9-201ENST00000219084 FAM43AQ8N2R8 423 aa5.37□□□□□ -1.55
CHD9-201ENST00000219084 ABCF1Q8NE71 845 aaKnown RBP eCLIP5.37□□□□□ -1.55
CHD9-201ENST00000219084 ZSCAN21Q9Y5A6 473 aaPredicted RBP5.37□□□□□ -1.55
CHD9-201ENST00000219084 DHX29Q7Z478 1369 aaKnown RBP5.37□□□□□ -1.55
CHD9-201ENST00000219084 PDCP20941 246 aa5.37□□□□□ -1.55
CHD9-201ENST00000219084 GNAI1P63096 354 aa5.37□□□□□ -1.55
CHD9-201ENST00000219084 CWC22Q9HCG8 908 aaKnown RBP5.37□□□□□ -1.55
CHD9-201ENST00000219084 CCDC173Q0VFZ6 552 aa5.37□□□□□ -1.55
CHD9-201ENST00000219084 PLPPR3Q6T4P5 718 aa5.37□□□□□ -1.55
CHD9-201ENST00000219084 COG3Q96JB2 828 aa5.37□□□□□ -1.55
CHD9-201ENST00000219084 GORABQ5T7V8 394 aa5.37□□□□□ -1.55
CHD9-201ENST00000219084 CLUAP1Q96AJ1 413 aa5.37□□□□□ -1.55
CHD9-201ENST00000219084 BECN2A8MW95 431 aa5.36□□□□□ -1.55
CHD9-201ENST00000219084 CDR1P51861 262 aa5.36□□□□□ -1.55
CHD9-201ENST00000219084 SPRYD3Q8NCJ5 442 aa5.36□□□□□ -1.55
CHD9-201ENST00000219084 CIZ1Q9ULV3 898 aaPredicted RBP5.36□□□□□ -1.55
CHD9-201ENST00000219084 PBRM1Q86U86 1689 aa5.36□□□□□ -1.55
CHD9-201ENST00000219084 IPO7O95373 1038 aaKnown RBP5.36□□□□□ -1.55
CHD9-201ENST00000219084 FOXD1Q16676 465 aa5.36□□□□□ -1.55
CHD9-201ENST00000219084 TMX4Q9H1E5 349 aaPredicted RBP5.36□□□□□ -1.55
CHD9-201ENST00000219084 TROQ12816 1431 aaPredicted RBP5.36□□□□□ -1.55
CHD9-201ENST00000219084 SNAPC4Q5SXM2 1469 aa5.36□□□□□ -1.55
CHD9-201ENST00000219084 PLEKHH1Q9ULM0 1364 aa5.36□□□□□ -1.55
CHD9-201ENST00000219084 PSMA5P28066 241 aa5.36□□□□□ -1.55
CHD9-201ENST00000219084 EPRSP07814 1512 aaKnown RBP5.36□□□□□ -1.55
CHD9-201ENST00000219084 CALRP27797 417 aaKnown RBP5.36□□□□□ -1.55
CHD9-201ENST00000219084 RABEP1Q15276 862 aa5.36□□□□□ -1.55
CHD9-201ENST00000219084 SF3A1Q15459 793 aaKnown RBP5.36□□□□□ -1.55
CHD9-201ENST00000219084 FAM184AQ8NB25 1140 aa5.36□□□□□ -1.55
CHD9-201ENST00000219084 CCDC47Q96A33 483 aaKnown RBP5.36□□□□□ -1.55
CHD9-201ENST00000219084 CRBNQ96SW2 442 aa5.36□□□□□ -1.55
CHD9-201ENST00000219084 CCDC66A2RUB6 948 aa5.36□□□□□ -1.55
CHD9-201ENST00000219084 CDC45O75419 566 aa5.36□□□□□ -1.55
CHD9-201ENST00000219084 NEXNQ0ZGT2 675 aa5.36□□□□□ -1.55
CHD9-201ENST00000219084 AEBP2Q6ZN18 517 aaPredicted RBP5.36□□□□□ -1.55
CHD9-201ENST00000219084 RAPGEF6Q8TEU7 1601 aa5.36□□□□□ -1.55
CHD9-201ENST00000219084 POLR1AO95602 1720 aaPredicted RBP5.36□□□□□ -1.55
CHD9-201ENST00000219084 DDX58O95786 925 aaKnown RBP5.35□□□□□ -1.55
CHD9-201ENST00000219084 ERCC4Q92889 916 aaPredicted RBP5.35□□□□□ -1.55
CHD9-201ENST00000219084 TXLNBQ8N3L3 684 aa5.35□□□□□ -1.55
CHD9-201ENST00000219084 GCC1Q96CN9 775 aa5.35□□□□□ -1.55
CHD9-201ENST00000219084 AK7Q96M32 723 aa5.35□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms