RNA–Protein interactions for RNA: ENST00000218348.7

USP11-201, Transcript of ubiquitin specific peptidase 11, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP11, Length 3,338 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP11-201ENST00000218348 TMEM131LA2VDJ0 1609 aa13.84□□□□□ -0.19
USP11-201ENST00000218348 ADGRB3O60242 1522 aa13.82□□□□□ -0.2
USP11-201ENST00000218348 CCDC184Q52MB2 194 aa13.82□□□□□ -0.2
USP11-201ENST00000218348 UBR1Q8IWV7 1749 aa13.82□□□□□ -0.2
USP11-201ENST00000218348 PTPRMP28827 1452 aa13.82□□□□□ -0.2
USP11-201ENST00000218348 KDM4FA0A1W2PPD8 638 aa13.81□□□□□ -0.2
USP11-201ENST00000218348 ZMYM3Q14202 1370 aa13.81□□□□□ -0.2
USP11-201ENST00000218348 FAM9BQ8IZU0 186 aa13.8□□□□□ -0.2
USP11-201ENST00000218348 CFAP65Q6ZU64 1925 aaKnown RBP13.8□□□□□ -0.2
USP11-201ENST00000218348 HNRNPUQ00839 825 aaKnown RBP eCLIP13.79□□□□□ -0.2
USP11-201ENST00000218348 SPATA31E1Q6ZUB1 1445 aa13.79□□□□□ -0.2
USP11-201ENST00000218348 CARD11Q9BXL7 1154 aa13.78□□□□□ -0.2
USP11-201ENST00000218348 PPLO60437 1756 aa13.78□□□□□ -0.2
USP11-201ENST00000218348 KIF1BO60333 1816 aa13.78□□□□□ -0.2
USP11-201ENST00000218348 KANK1Q14678 1352 aa13.77□□□□□ -0.2
USP11-201ENST00000218348 GGT6Q6P531 493 aa13.77□□□□□ -0.21
USP11-201ENST00000218348 SUPT16HQ9Y5B9 1047 aaKnown RBP13.77□□□□□ -0.21
USP11-201ENST00000218348 KIF7Q2M1P5 1343 aa13.76□□□□□ -0.21
USP11-201ENST00000218348 SALL2Q9Y467 1007 aaPredicted RBP13.76□□□□□ -0.21
USP11-201ENST00000218348 FKBP8Q14318 412 aa13.75□□□□□ -0.21
USP11-201ENST00000218348 WASHC2CQ9Y4E1 1318 aa13.74□□□□□ -0.21
USP11-201ENST00000218348 SENP3Q9H4L4 574 aaPredicted RBP13.74□□□□□ -0.21
USP11-201ENST00000218348 SETD1AO15047 1707 aaKnown RBP13.74□□□□□ -0.21
USP11-201ENST00000218348 IRX6P78412 446 aaPredicted RBP13.74□□□□□ -0.21
USP11-201ENST00000218348 NEXMIFQ5QGS0 1516 aa13.74□□□□□ -0.21
USP11-201ENST00000218348 CCDC7Q96M83 1385 aa13.73□□□□□ -0.21
USP11-201ENST00000218348 MRS2Q9HD23 443 aa13.73□□□□□ -0.21
USP11-201ENST00000218348 CEP170BQ9Y4F5 1589 aaPredicted RBP13.73□□□□□ -0.21
USP11-201ENST00000218348 NRXN1Q9ULB1 1477 aa13.73□□□□□ -0.21
USP11-201ENST00000218348 ST20-MTHFSA0A0A6YYL1 179 aa13.72□□□□□ -0.21
USP11-201ENST00000218348 CCER2I3L3R5 266 aa13.72□□□□□ -0.21
USP11-201ENST00000218348 USP47Q96K76 1375 aa13.72□□□□□ -0.21
USP11-201ENST00000218348 NRXN3Q9Y4C0 1643 aa13.72□□□□□ -0.21
USP11-201ENST00000218348 NBPF1Q3BBV0 1214 aa13.72□□□□□ -0.21
USP11-201ENST00000218348 NLRP1Q9C000 1473 aa13.71□□□□□ -0.21
USP11-201ENST00000218348 FBXO31Q5XUX0 539 aaPredicted RBP13.71□□□□□ -0.21
USP11-201ENST00000218348 UBE2Q2Q8WVN8 375 aa13.71□□□□□ -0.21
USP11-201ENST00000218348 A2ML1A8K2U0 1454 aa13.71□□□□□ -0.22
USP11-201ENST00000218348 SLIT1O75093 1534 aa13.71□□□□□ -0.22
USP11-201ENST00000218348 ARHGAP23Q9P227 1491 aa13.7□□□□□ -0.22
USP11-201ENST00000218348 SETD1BQ9UPS6 1966 aaKnown RBP13.7□□□□□ -0.22
USP11-201ENST00000218348 ZFYVE9O95405 1425 aa13.7□□□□□ -0.22
USP11-201ENST00000218348 MLECQ14165 292 aa13.69□□□□□ -0.22
USP11-201ENST00000218348 PRKRIP1Q9H875 184 aaPredicted RBP13.68□□□□□ -0.22
USP11-201ENST00000218348 LMTK3Q96Q04 1460 aa13.68□□□□□ -0.22
USP11-201ENST00000218348 ARID4BQ4LE39 1312 aaPredicted RBP13.68□□□□□ -0.22
USP11-201ENST00000218348 STRCQ7RTU9 1775 aa13.66□□□□□ -0.22
USP11-201ENST00000218348 POLR1AO95602 1720 aaPredicted RBP13.66□□□□□ -0.22
USP11-201ENST00000218348 TNRQ92752 1358 aa13.66□□□□□ -0.22
USP11-201ENST00000218348 MYOM2P54296 1465 aa13.66□□□□□ -0.22
USP11-201ENST00000218348 CEBPAP49715 358 aaPredicted RBP13.66□□□□□ -0.22
USP11-201ENST00000218348 CCDC144AA2RUR9 1427 aa13.66□□□□□ -0.22
USP11-201ENST00000218348 PODXL2Q9NZ53 605 aa13.66□□□□□ -0.22
USP11-201ENST00000218348 ROCK2O75116 1388 aaKnown RBP13.65□□□□□ -0.22
USP11-201ENST00000218348 KIAA1210Q9ULL0 1709 aa13.65□□□□□ -0.22
USP11-201ENST00000218348 TRPM1Q7Z4N2 1603 aa13.64□□□□□ -0.23
USP11-201ENST00000218348 NEFLP07196 543 aa13.64□□□□□ -0.23
USP11-201ENST00000218348 CHGAP10645 457 aaKnown RBP13.64□□□□□ -0.23
USP11-201ENST00000218348 UHRF1BP1Q6BDS2 1440 aa13.63□□□□□ -0.23
USP11-201ENST00000218348 IQGAP1P46940 1657 aa13.63□□□□□ -0.23
USP11-201ENST00000218348 IDI1Q13907 227 aa13.62□□□□□ -0.23
USP11-201ENST00000218348 SETBP1Q9Y6X0 1596 aa13.62□□□□□ -0.23
USP11-201ENST00000218348 TSHZ2Q9NRE2 1034 aa13.62□□□□□ -0.23
USP11-201ENST00000218348 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.62□□□□□ -0.23
USP11-201ENST00000218348 ASXL1Q8IXJ9 1541 aa13.6□□□□□ -0.23
USP11-201ENST00000218348 SLC52A1Q9NWF4 448 aa13.6□□□□□ -0.23
USP11-201ENST00000218348 MED14O60244 1454 aa13.6□□□□□ -0.23
USP11-201ENST00000218348 LAMC1P11047 1609 aa13.6□□□□□ -0.23
USP11-201ENST00000218348 PIK3C2GO75747 1445 aa13.59□□□□□ -0.23
USP11-201ENST00000218348 ADGRB1O14514 1584 aa13.58□□□□□ -0.23
USP11-201ENST00000218348 PKNOX2Q96KN3 472 aa13.57□□□□□ -0.24
USP11-201ENST00000218348 PRAG1Q86YV5 1406 aa13.57□□□□□ -0.24
USP11-201ENST00000218348 CC2D1BQ5T0F9 858 aaKnown RBP13.57□□□□□ -0.24
USP11-201ENST00000218348 NUTM2DQ5VT03 806 aaPredicted RBP13.56□□□□□ -0.24
USP11-201ENST00000218348 TMC1Q8TDI8 760 aa13.56□□□□□ -0.24
USP11-201ENST00000218348 TMEM2Q9UHN6 1383 aa13.56□□□□□ -0.24
USP11-201ENST00000218348 KNDC1Q76NI1 1749 aa13.54□□□□□ -0.24
USP11-201ENST00000218348 STRCP1A6NGW2 1772 aa13.53□□□□□ -0.24
USP11-201ENST00000218348 DIP2AQ14689 1571 aa13.53□□□□□ -0.24
USP11-201ENST00000218348 ALKQ9UM73 1620 aa13.53□□□□□ -0.24
USP11-201ENST00000218348 XRN1Q8IZH2 1706 aaKnown RBP13.52□□□□□ -0.24
USP11-201ENST00000218348 ADAMTS13Q76LX8 1427 aa13.52□□□□□ -0.24
USP11-201ENST00000218348 RIMS2Q9UQ26 1411 aa13.52□□□□□ -0.24
USP11-201ENST00000218348 RALGAPBQ86X10 1494 aa13.51□□□□□ -0.25
USP11-201ENST00000218348 NWD1Q149M9 1564 aa13.51□□□□□ -0.25
USP11-201ENST00000218348 RPGRIP1LQ68CZ1 1315 aa13.51□□□□□ -0.25
USP11-201ENST00000218348 CHD2O14647 1828 aaKnown RBP13.5□□□□□ -0.25
USP11-201ENST00000218348 GPRASP1Q5JY77 1395 aa13.5□□□□□ -0.25
USP11-201ENST00000218348 SCAF11Q99590 1463 aaKnown RBP13.5□□□□□ -0.25
USP11-201ENST00000218348 ARHGEF28Q8N1W1 1705 aaKnown RBP13.49□□□□□ -0.25
USP11-201ENST00000218348 PLEKHG1Q9ULL1 1385 aa13.49□□□□□ -0.25
USP11-201ENST00000218348 ESF1Q9H501 851 aaKnown RBP13.49□□□□□ -0.25
USP11-201ENST00000218348 PANK3Q9H999 370 aa13.49□□□□□ -0.25
USP11-201ENST00000218348 LTKP29376 864 aa13.48□□□□□ -0.25
USP11-201ENST00000218348 ADGRF5Q8IZF2 1346 aa13.48□□□□□ -0.25
USP11-201ENST00000218348 CFAP70Q5T0N1 1121 aa13.47□□□□□ -0.25
USP11-201ENST00000218348 DISP3Q9P2K9 1392 aa13.47□□□□□ -0.25
USP11-201ENST00000218348 AEBP2Q6ZN18 517 aaPredicted RBP13.46□□□□□ -0.25
USP11-201ENST00000218348 XIRP1Q702N8 1843 aaKnown RBP13.46□□□□□ -0.25
USP11-201ENST00000218348 CPS1P31327 1500 aa13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms