RNA–Protein interactions for RNA: ENSMUST00000113440.1

Ccdc88b-201, Transcript of Coiled-coil domain-containing protein 88B, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ccdc88b, Length 4,959 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88b-201ENSMUST00000113440 Q9D9H8 365 aa19.51■□□□□ 0.71
Ccdc88b-201ENSMUST00000113440 Ap3b2Q9JME5 1082 aa19.51■□□□□ 0.71
Ccdc88b-201ENSMUST00000113440 Pank1Q8K4K6 548 aa19.5■□□□□ 0.71
Ccdc88b-201ENSMUST00000113440 L3mbtl2P59178 703 aa19.49■□□□□ 0.71
Ccdc88b-201ENSMUST00000113440 Gsto1O09131 240 aa19.49■□□□□ 0.71
Ccdc88b-201ENSMUST00000113440 Stk31Q99MW1 1018 aa19.49■□□□□ 0.71
Ccdc88b-201ENSMUST00000113440 Rab3gap2Q8BMG7 1366 aa19.49■□□□□ 0.71
Ccdc88b-201ENSMUST00000113440 PrxO55103 1391 aa19.48■□□□□ 0.71
Ccdc88b-201ENSMUST00000113440 Cabp4Q8VHC5 271 aa19.48■□□□□ 0.71
Ccdc88b-201ENSMUST00000113440 Ttll13A4Q9F6 804 aa19.48■□□□□ 0.71
Ccdc88b-201ENSMUST00000113440 GorabQ8BRM2 368 aa19.48■□□□□ 0.71
Ccdc88b-201ENSMUST00000113440 Sart3Q9JLI8 962 aaKnown RBP19.47■□□□□ 0.71
Ccdc88b-201ENSMUST00000113440 Pla2r1Q62028 1487 aa19.47■□□□□ 0.71
Ccdc88b-201ENSMUST00000113440 Trim58Q5NCC9 485 aa19.46■□□□□ 0.71
Ccdc88b-201ENSMUST00000113440 Atp2b2Q9R0K7 1198 aa19.46■□□□□ 0.71
Ccdc88b-201ENSMUST00000113440 PxdnQ3UQ28 1475 aa19.45■□□□□ 0.7
Ccdc88b-201ENSMUST00000113440 Sall3Q62255 1320 aa19.45■□□□□ 0.7
Ccdc88b-201ENSMUST00000113440 Mlh3A0A1Y7VMP7 1443 aa19.45■□□□□ 0.7
Ccdc88b-201ENSMUST00000113440 Plekhh1Q80TI1 1356 aa19.44■□□□□ 0.7
Ccdc88b-201ENSMUST00000113440 Ak7Q9D2H2 614 aa19.44■□□□□ 0.7
Ccdc88b-201ENSMUST00000113440 G3bp1P97855 465 aaKnown RBP19.43■□□□□ 0.7
Ccdc88b-201ENSMUST00000113440 Adam1bQ8R534 806 aa19.43■□□□□ 0.7
Ccdc88b-201ENSMUST00000113440 Pik3c2gO70167 1506 aa19.43■□□□□ 0.7
Ccdc88b-201ENSMUST00000113440 Disp1Q3TDN0 1521 aa19.43■□□□□ 0.7
Ccdc88b-201ENSMUST00000113440 Caskin1Q6P9K8 1431 aa19.42■□□□□ 0.7
Ccdc88b-201ENSMUST00000113440 Eif2s2Q99L45 331 aaKnown RBP19.42■□□□□ 0.7
Ccdc88b-201ENSMUST00000113440 Apaf1O88879 1249 aa19.41■□□□□ 0.7
Ccdc88b-201ENSMUST00000113440 Casc1Q6TDU8 730 aa19.41■□□□□ 0.7
Ccdc88b-201ENSMUST00000113440 Eif4g1Q6NZJ6 1600 aaKnown RBP19.41■□□□□ 0.7
Ccdc88b-201ENSMUST00000113440 WizO88286 1684 aaKnown RBP19.4■□□□□ 0.7
Ccdc88b-201ENSMUST00000113440 MccE9PWI3 1003 aa19.4■□□□□ 0.7
Ccdc88b-201ENSMUST00000113440 Erich3F6QRE9 1637 aa19.4■□□□□ 0.7
Ccdc88b-201ENSMUST00000113440 Igf1rQ60751 1373 aa19.4■□□□□ 0.7
Ccdc88b-201ENSMUST00000113440 Asxl1P59598 1514 aa19.4■□□□□ 0.7
Ccdc88b-201ENSMUST00000113440 Polr3aB2RXC6 1390 aa19.39■□□□□ 0.69
Ccdc88b-201ENSMUST00000113440 Tnnt2P50752 301 aa19.39■□□□□ 0.69
Ccdc88b-201ENSMUST00000113440 Ccdc146E9Q9F7 977 aa19.38■□□□□ 0.69
Ccdc88b-201ENSMUST00000113440 Ylpm1Q9R0I7 1386 aaKnown RBP19.37■□□□□ 0.69
Ccdc88b-201ENSMUST00000113440 Afap1Q80YS6 731 aa19.37■□□□□ 0.69
Ccdc88b-201ENSMUST00000113440 Erich6bQ9D4S6 220 aa19.37■□□□□ 0.69
Ccdc88b-201ENSMUST00000113440 Fam135aQ6NS59 1506 aa19.36■□□□□ 0.69
Ccdc88b-201ENSMUST00000113440 Rrp12Q6P5B0 1295 aaKnown RBP19.36■□□□□ 0.69
Ccdc88b-201ENSMUST00000113440 4933402E13RikQ9D4D2 429 aa19.36■□□□□ 0.69
Ccdc88b-201ENSMUST00000113440 Gm21190A0A0G2JGJ6 266 aa19.36■□□□□ 0.69
Ccdc88b-201ENSMUST00000113440 PtmsQ9D0J8 101 aaKnown RBP19.35■□□□□ 0.69
Ccdc88b-201ENSMUST00000113440 Pes1Q9EQ61 584 aaKnown RBP19.35■□□□□ 0.69
Ccdc88b-201ENSMUST00000113440 FanciQ8K368 1330 aa19.34■□□□□ 0.69
Ccdc88b-201ENSMUST00000113440 Nectin2P32507 530 aa19.34■□□□□ 0.69
Ccdc88b-201ENSMUST00000113440 KarsQ99MN1 595 aaKnown RBP19.34■□□□□ 0.69
Ccdc88b-201ENSMUST00000113440 Nutm1Q8BHP2 1126 aa19.34■□□□□ 0.69
Ccdc88b-201ENSMUST00000113440 Ttc21bQ0HA38 1315 aa19.33■□□□□ 0.69
Ccdc88b-201ENSMUST00000113440 Camsap2Q8C1B1 1461 aa19.33■□□□□ 0.68
Ccdc88b-201ENSMUST00000113440 Atp10dQ8K2X1 1416 aa19.32■□□□□ 0.68
Ccdc88b-201ENSMUST00000113440 Rbm25B2RY56 838 aaKnown RBP19.31■□□□□ 0.68
Ccdc88b-201ENSMUST00000113440 Fancd2Q80V62 1450 aa19.3■□□□□ 0.68
Ccdc88b-201ENSMUST00000113440 Mre11Q61216 706 aa19.3■□□□□ 0.68
Ccdc88b-201ENSMUST00000113440 Sh3bp5Q9Z131 463 aa19.3■□□□□ 0.68
Ccdc88b-201ENSMUST00000113440 PrkcshO08795 521 aa19.29■□□□□ 0.68
Ccdc88b-201ENSMUST00000113440 Rapgef6Q5NCJ1 1609 aa19.29■□□□□ 0.68
Ccdc88b-201ENSMUST00000113440 HdgfP51859 237 aaKnown RBP19.29■□□□□ 0.68
Ccdc88b-201ENSMUST00000113440 Swt1Q9DBQ9 907 aa19.29■□□□□ 0.68
Ccdc88b-201ENSMUST00000113440 Ciz1Q8VEH2 845 aa19.28■□□□□ 0.68
Ccdc88b-201ENSMUST00000113440 Usp16Q99LG0 825 aa19.28■□□□□ 0.68
Ccdc88b-201ENSMUST00000113440 PnnO35691 725 aaKnown RBP19.28■□□□□ 0.68
Ccdc88b-201ENSMUST00000113440 Kif21aQ9QXL2 1672 aa19.28■□□□□ 0.68
Ccdc88b-201ENSMUST00000113440 Cc2d1aQ8K1A6 943 aa19.28■□□□□ 0.68
Ccdc88b-201ENSMUST00000113440 Ccdc183A2AJB1 534 aa19.27■□□□□ 0.68
Ccdc88b-201ENSMUST00000113440 Znf326O88291 580 aa19.27■□□□□ 0.68
Ccdc88b-201ENSMUST00000113440 Eif4g2Q62448 906 aaKnown RBP19.27■□□□□ 0.68
Ccdc88b-201ENSMUST00000113440 Shroom2A2ALU4 1481 aa19.27■□□□□ 0.68
Ccdc88b-201ENSMUST00000113440 Adgrb2Q8CGM1 1561 aa19.27■□□□□ 0.68
Ccdc88b-201ENSMUST00000113440 Peg3Q3URU2 1571 aa19.26■□□□□ 0.67
Ccdc88b-201ENSMUST00000113440 Arhgef40Q3UPH7 1517 aa19.26■□□□□ 0.67
Ccdc88b-201ENSMUST00000113440 MsnP26041 577 aaKnown RBP19.26■□□□□ 0.67
Ccdc88b-201ENSMUST00000113440 Rassf8Q8CJ96 419 aa19.25■□□□□ 0.67
Ccdc88b-201ENSMUST00000113440 Ddrgk1Q80WW9 315 aa19.25■□□□□ 0.67
Ccdc88b-201ENSMUST00000113440 Cdk19Q8BWD8 501 aa19.25■□□□□ 0.67
Ccdc88b-201ENSMUST00000113440 Lmtk2Q3TYD6 1471 aa19.25■□□□□ 0.67
Ccdc88b-201ENSMUST00000113440 Atp7aQ64430 1491 aa19.25■□□□□ 0.67
Ccdc88b-201ENSMUST00000113440 Trappc8E9PWG2 1437 aa19.25■□□□□ 0.67
Ccdc88b-201ENSMUST00000113440 Gnai1B2RSH2 354 aa19.25■□□□□ 0.67
Ccdc88b-201ENSMUST00000113440 Gnai3Q9DC51 354 aa19.25■□□□□ 0.67
Ccdc88b-201ENSMUST00000113440 DroshaQ5HZJ0 1373 aaKnown RBP19.24■□□□□ 0.67
Ccdc88b-201ENSMUST00000113440 Prex2Q3LAC4 1598 aa19.24■□□□□ 0.67
Ccdc88b-201ENSMUST00000113440 Triml2E9PW10 424 aa19.24■□□□□ 0.67
Ccdc88b-201ENSMUST00000113440 Cgnl1Q6AW69 1298 aa19.24■□□□□ 0.67
Ccdc88b-201ENSMUST00000113440 Dusp27Q148W8 1138 aa19.23■□□□□ 0.67
Ccdc88b-201ENSMUST00000113440 Magi3Q9EQJ9 1476 aa19.23■□□□□ 0.67
Ccdc88b-201ENSMUST00000113440 Rfx1P48377 963 aa19.22■□□□□ 0.67
Ccdc88b-201ENSMUST00000113440 Ggt6Q6PDE7 497 aa19.22■□□□□ 0.67
Ccdc88b-201ENSMUST00000113440 AI481877A2ALV5 1481 aa19.22■□□□□ 0.67
Ccdc88b-201ENSMUST00000113440 Lmo7E9PYF4 1699 aaKnown RBP19.22■□□□□ 0.67
Ccdc88b-201ENSMUST00000113440 Slc4a10Q5DTL9 1118 aa19.22■□□□□ 0.67
Ccdc88b-201ENSMUST00000113440 Pde3bQ61409 1100 aa19.22■□□□□ 0.67
Ccdc88b-201ENSMUST00000113440 Brpf1B2RRD7 1212 aa19.21■□□□□ 0.67
Ccdc88b-201ENSMUST00000113440 Atl3Q91YH5 541 aa19.21■□□□□ 0.67
Ccdc88b-201ENSMUST00000113440 Clstn1Q9EPL2 979 aa19.21■□□□□ 0.67
Ccdc88b-201ENSMUST00000113440 Fyb1O35601 819 aa19.21■□□□□ 0.67
Ccdc88b-201ENSMUST00000113440 Wdr7Q920I9 1489 aa19.21■□□□□ 0.67
Ccdc88b-201ENSMUST00000113440 Cavin4A2AMM0 362 aa19.21■□□□□ 0.67
Retrieved 100 of 22,080 RNA–protein pairs in 12.5 ms