RNA–Protein interactions for RNA: ENSMUST00000113440.1

Ccdc88b-201, Transcript of Coiled-coil domain-containing protein 88B, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ccdc88b, Length 4,959 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88b-201ENSMUST00000113440 Q9D9H8 365 aa19.51■□□□□ 0.71
Ccdc88b-201ENSMUST00000113440 Ap3b2Q9JME5 1082 aa19.51■□□□□ 0.71
Ccdc88b-201ENSMUST00000113440 Pank1Q8K4K6 548 aa19.5■□□□□ 0.71
Ccdc88b-201ENSMUST00000113440 L3mbtl2P59178 703 aa19.49■□□□□ 0.71
Ccdc88b-201ENSMUST00000113440 Gsto1O09131 240 aa19.49■□□□□ 0.71
Ccdc88b-201ENSMUST00000113440 Stk31Q99MW1 1018 aa19.49■□□□□ 0.71
Ccdc88b-201ENSMUST00000113440 Rab3gap2Q8BMG7 1366 aa19.49■□□□□ 0.71
Ccdc88b-201ENSMUST00000113440 PrxO55103 1391 aa19.48■□□□□ 0.71
Ccdc88b-201ENSMUST00000113440 Cabp4Q8VHC5 271 aa19.48■□□□□ 0.71
Ccdc88b-201ENSMUST00000113440 Ttll13A4Q9F6 804 aa19.48■□□□□ 0.71
Ccdc88b-201ENSMUST00000113440 GorabQ8BRM2 368 aa19.48■□□□□ 0.71
Ccdc88b-201ENSMUST00000113440 Sart3Q9JLI8 962 aaKnown RBP19.47■□□□□ 0.71
Ccdc88b-201ENSMUST00000113440 Pla2r1Q62028 1487 aa19.47■□□□□ 0.71
Ccdc88b-201ENSMUST00000113440 Trim58Q5NCC9 485 aa19.46■□□□□ 0.71
Ccdc88b-201ENSMUST00000113440 Atp2b2Q9R0K7 1198 aa19.46■□□□□ 0.71
Ccdc88b-201ENSMUST00000113440 PxdnQ3UQ28 1475 aa19.45■□□□□ 0.7
Ccdc88b-201ENSMUST00000113440 Sall3Q62255 1320 aa19.45■□□□□ 0.7
Ccdc88b-201ENSMUST00000113440 Mlh3A0A1Y7VMP7 1443 aa19.45■□□□□ 0.7
Ccdc88b-201ENSMUST00000113440 Plekhh1Q80TI1 1356 aa19.44■□□□□ 0.7
Ccdc88b-201ENSMUST00000113440 Ak7Q9D2H2 614 aa19.44■□□□□ 0.7
Ccdc88b-201ENSMUST00000113440 G3bp1P97855 465 aaKnown RBP19.43■□□□□ 0.7
Ccdc88b-201ENSMUST00000113440 Adam1bQ8R534 806 aa19.43■□□□□ 0.7
Ccdc88b-201ENSMUST00000113440 Pik3c2gO70167 1506 aa19.43■□□□□ 0.7
Ccdc88b-201ENSMUST00000113440 Disp1Q3TDN0 1521 aa19.43■□□□□ 0.7
Ccdc88b-201ENSMUST00000113440 Caskin1Q6P9K8 1431 aa19.42■□□□□ 0.7
Ccdc88b-201ENSMUST00000113440 Eif2s2Q99L45 331 aaKnown RBP19.42■□□□□ 0.7
Ccdc88b-201ENSMUST00000113440 Apaf1O88879 1249 aa19.41■□□□□ 0.7
Ccdc88b-201ENSMUST00000113440 Casc1Q6TDU8 730 aa19.41■□□□□ 0.7
Ccdc88b-201ENSMUST00000113440 Eif4g1Q6NZJ6 1600 aaKnown RBP19.41■□□□□ 0.7
Ccdc88b-201ENSMUST00000113440 WizO88286 1684 aaKnown RBP19.4■□□□□ 0.7
Ccdc88b-201ENSMUST00000113440 MccE9PWI3 1003 aa19.4■□□□□ 0.7
Ccdc88b-201ENSMUST00000113440 Erich3F6QRE9 1637 aa19.4■□□□□ 0.7
Ccdc88b-201ENSMUST00000113440 Igf1rQ60751 1373 aa19.4■□□□□ 0.7
Ccdc88b-201ENSMUST00000113440 Asxl1P59598 1514 aa19.4■□□□□ 0.7
Ccdc88b-201ENSMUST00000113440 Polr3aB2RXC6 1390 aa19.39■□□□□ 0.69
Ccdc88b-201ENSMUST00000113440 Tnnt2P50752 301 aa19.39■□□□□ 0.69
Ccdc88b-201ENSMUST00000113440 Ccdc146E9Q9F7 977 aa19.38■□□□□ 0.69
Ccdc88b-201ENSMUST00000113440 Ylpm1Q9R0I7 1386 aaKnown RBP19.37■□□□□ 0.69
Ccdc88b-201ENSMUST00000113440 Afap1Q80YS6 731 aa19.37■□□□□ 0.69
Ccdc88b-201ENSMUST00000113440 Erich6bQ9D4S6 220 aa19.37■□□□□ 0.69
Ccdc88b-201ENSMUST00000113440 Fam135aQ6NS59 1506 aa19.36■□□□□ 0.69
Ccdc88b-201ENSMUST00000113440 Rrp12Q6P5B0 1295 aaKnown RBP19.36■□□□□ 0.69
Ccdc88b-201ENSMUST00000113440 4933402E13RikQ9D4D2 429 aa19.36■□□□□ 0.69
Ccdc88b-201ENSMUST00000113440 Gm21190A0A0G2JGJ6 266 aa19.36■□□□□ 0.69
Ccdc88b-201ENSMUST00000113440 PtmsQ9D0J8 101 aaKnown RBP19.35■□□□□ 0.69
Ccdc88b-201ENSMUST00000113440 Pes1Q9EQ61 584 aaKnown RBP19.35■□□□□ 0.69
Ccdc88b-201ENSMUST00000113440 FanciQ8K368 1330 aa19.34■□□□□ 0.69
Ccdc88b-201ENSMUST00000113440 Nectin2P32507 530 aa19.34■□□□□ 0.69
Ccdc88b-201ENSMUST00000113440 KarsQ99MN1 595 aaKnown RBP19.34■□□□□ 0.69
Ccdc88b-201ENSMUST00000113440 Nutm1Q8BHP2 1126 aa19.34■□□□□ 0.69
Ccdc88b-201ENSMUST00000113440 Ttc21bQ0HA38 1315 aa19.33■□□□□ 0.69
Ccdc88b-201ENSMUST00000113440 Camsap2Q8C1B1 1461 aa19.33■□□□□ 0.68
Ccdc88b-201ENSMUST00000113440 Atp10dQ8K2X1 1416 aa19.32■□□□□ 0.68
Ccdc88b-201ENSMUST00000113440 Rbm25B2RY56 838 aaKnown RBP19.31■□□□□ 0.68
Ccdc88b-201ENSMUST00000113440 Fancd2Q80V62 1450 aa19.3■□□□□ 0.68
Ccdc88b-201ENSMUST00000113440 Mre11Q61216 706 aa19.3■□□□□ 0.68
Ccdc88b-201ENSMUST00000113440 Sh3bp5Q9Z131 463 aa19.3■□□□□ 0.68
Ccdc88b-201ENSMUST00000113440 PrkcshO08795 521 aa19.29■□□□□ 0.68
Ccdc88b-201ENSMUST00000113440 Rapgef6Q5NCJ1 1609 aa19.29■□□□□ 0.68
Ccdc88b-201ENSMUST00000113440 HdgfP51859 237 aaKnown RBP19.29■□□□□ 0.68
Ccdc88b-201ENSMUST00000113440 Swt1Q9DBQ9 907 aa19.29■□□□□ 0.68
Ccdc88b-201ENSMUST00000113440 Ciz1Q8VEH2 845 aa19.28■□□□□ 0.68
Ccdc88b-201ENSMUST00000113440 Usp16Q99LG0 825 aa19.28■□□□□ 0.68
Ccdc88b-201ENSMUST00000113440 PnnO35691 725 aaKnown RBP19.28■□□□□ 0.68
Ccdc88b-201ENSMUST00000113440 Kif21aQ9QXL2 1672 aa19.28■□□□□ 0.68
Ccdc88b-201ENSMUST00000113440 Cc2d1aQ8K1A6 943 aa19.28■□□□□ 0.68
Ccdc88b-201ENSMUST00000113440 Ccdc183A2AJB1 534 aa19.27■□□□□ 0.68
Ccdc88b-201ENSMUST00000113440 Znf326O88291 580 aa19.27■□□□□ 0.68
Ccdc88b-201ENSMUST00000113440 Eif4g2Q62448 906 aaKnown RBP19.27■□□□□ 0.68
Ccdc88b-201ENSMUST00000113440 Shroom2A2ALU4 1481 aa19.27■□□□□ 0.68
Ccdc88b-201ENSMUST00000113440 Adgrb2Q8CGM1 1561 aa19.27■□□□□ 0.68
Ccdc88b-201ENSMUST00000113440 Peg3Q3URU2 1571 aa19.26■□□□□ 0.67
Ccdc88b-201ENSMUST00000113440 Arhgef40Q3UPH7 1517 aa19.26■□□□□ 0.67
Ccdc88b-201ENSMUST00000113440 MsnP26041 577 aaKnown RBP19.26■□□□□ 0.67
Ccdc88b-201ENSMUST00000113440 Rassf8Q8CJ96 419 aa19.25■□□□□ 0.67
Ccdc88b-201ENSMUST00000113440 Ddrgk1Q80WW9 315 aa19.25■□□□□ 0.67
Ccdc88b-201ENSMUST00000113440 Cdk19Q8BWD8 501 aa19.25■□□□□ 0.67
Ccdc88b-201ENSMUST00000113440 Lmtk2Q3TYD6 1471 aa19.25■□□□□ 0.67
Ccdc88b-201ENSMUST00000113440 Atp7aQ64430 1491 aa19.25■□□□□ 0.67
Ccdc88b-201ENSMUST00000113440 Trappc8E9PWG2 1437 aa19.25■□□□□ 0.67
Ccdc88b-201ENSMUST00000113440 Gnai1B2RSH2 354 aa19.25■□□□□ 0.67
Ccdc88b-201ENSMUST00000113440 Gnai3Q9DC51 354 aa19.25■□□□□ 0.67
Ccdc88b-201ENSMUST00000113440 DroshaQ5HZJ0 1373 aaKnown RBP19.24■□□□□ 0.67
Ccdc88b-201ENSMUST00000113440 Prex2Q3LAC4 1598 aa19.24■□□□□ 0.67
Ccdc88b-201ENSMUST00000113440 Triml2E9PW10 424 aa19.24■□□□□ 0.67
Ccdc88b-201ENSMUST00000113440 Cgnl1Q6AW69 1298 aa19.24■□□□□ 0.67
Ccdc88b-201ENSMUST00000113440 Dusp27Q148W8 1138 aa19.23■□□□□ 0.67
Ccdc88b-201ENSMUST00000113440 Magi3Q9EQJ9 1476 aa19.23■□□□□ 0.67
Ccdc88b-201ENSMUST00000113440 Rfx1P48377 963 aa19.22■□□□□ 0.67
Ccdc88b-201ENSMUST00000113440 Ggt6Q6PDE7 497 aa19.22■□□□□ 0.67
Ccdc88b-201ENSMUST00000113440 AI481877A2ALV5 1481 aa19.22■□□□□ 0.67
Ccdc88b-201ENSMUST00000113440 Lmo7E9PYF4 1699 aaKnown RBP19.22■□□□□ 0.67
Ccdc88b-201ENSMUST00000113440 Slc4a10Q5DTL9 1118 aa19.22■□□□□ 0.67
Ccdc88b-201ENSMUST00000113440 Pde3bQ61409 1100 aa19.22■□□□□ 0.67
Ccdc88b-201ENSMUST00000113440 Brpf1B2RRD7 1212 aa19.21■□□□□ 0.67
Ccdc88b-201ENSMUST00000113440 Atl3Q91YH5 541 aa19.21■□□□□ 0.67
Ccdc88b-201ENSMUST00000113440 Clstn1Q9EPL2 979 aa19.21■□□□□ 0.67
Ccdc88b-201ENSMUST00000113440 Fyb1O35601 819 aa19.21■□□□□ 0.67
Ccdc88b-201ENSMUST00000113440 Wdr7Q920I9 1489 aa19.21■□□□□ 0.67
Ccdc88b-201ENSMUST00000113440 Cavin4A2AMM0 362 aa19.21■□□□□ 0.67
Retrieved 100 of 22,080 RNA–protein pairs in 152.6 ms