RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 TDRD5Q8NAT2 981 aaKnown RBP20.91■□□□□ 0.94
CLN3-260ENST00000637578 SMG7Q92540 1137 aaKnown RBP20.91■□□□□ 0.94
CLN3-260ENST00000637578 DHX58Q96C10 678 aa20.91■□□□□ 0.94
CLN3-260ENST00000637578 ACCSQ96QU6 501 aa20.91■□□□□ 0.94
CLN3-260ENST00000637578 ASB7Q9H672 318 aa20.91■□□□□ 0.94
CLN3-260ENST00000637578 DERAQ9Y315 318 aa20.91■□□□□ 0.94
CLN3-260ENST00000637578 CDY1Q9Y6F8 540 aa20.91■□□□□ 0.94
CLN3-260ENST00000637578 C2orf16Q68DN1 1984 aa20.9■□□□□ 0.94
CLN3-260ENST00000637578 M0QZQ0 153 aa20.9■□□□□ 0.94
CLN3-260ENST00000637578 XPOTO43592 962 aaKnown RBP20.9■□□□□ 0.94
CLN3-260ENST00000637578 GCNT3O95395 438 aa20.9■□□□□ 0.94
CLN3-260ENST00000637578 HOXA9P31269 272 aa20.9■□□□□ 0.94
CLN3-260ENST00000637578 ACOT2P49753 483 aa20.9■□□□□ 0.94
CLN3-260ENST00000637578 AMPD3Q01432 767 aa20.9■□□□□ 0.94
CLN3-260ENST00000637578 UVSSAQ2YD98 709 aa20.9■□□□□ 0.94
CLN3-260ENST00000637578 VARS2Q5ST30 1063 aaKnown RBP20.9■□□□□ 0.94
CLN3-260ENST00000637578 TRIM67Q6ZTA4 783 aa20.9■□□□□ 0.94
CLN3-260ENST00000637578 OTOP3Q7RTS5 596 aa20.9■□□□□ 0.94
CLN3-260ENST00000637578 CCDC65Q8IXS2 484 aa20.9■□□□□ 0.94
CLN3-260ENST00000637578 C7orf25Q9BPX7 421 aa20.9■□□□□ 0.94
CLN3-260ENST00000637578 MAGEF1Q9HAY2 307 aa20.9■□□□□ 0.94
CLN3-260ENST00000637578 TECTAO75443 2155 aa20.9■□□□□ 0.94
CLN3-260ENST00000637578 N4BP1O75113 896 aaKnown RBP20.89■□□□□ 0.94
CLN3-260ENST00000637578 ABLIM3O94929 683 aa20.89■□□□□ 0.94
CLN3-260ENST00000637578 POU2F2P09086 479 aa20.89■□□□□ 0.94
CLN3-260ENST00000637578 HNRNPA1P09651 372 aaKnown RBP eCLIP20.89■□□□□ 0.94
CLN3-260ENST00000637578 JADE1Q6IE81 842 aa20.89■□□□□ 0.94
CLN3-260ENST00000637578 POMGNT1Q8WZA1 660 aa20.89■□□□□ 0.94
CLN3-260ENST00000637578 MCM4P33991 863 aa20.89■□□□□ 0.93
CLN3-260ENST00000637578 BMP8AQ7Z5Y6 402 aa20.89■□□□□ 0.93
CLN3-260ENST00000637578 ZNF461Q8TAF7 563 aa20.89■□□□□ 0.93
CLN3-260ENST00000637578 ACSF2Q96CM8 615 aaPredicted RBP20.89■□□□□ 0.93
CLN3-260ENST00000637578 LIMD1Q9UGP4 676 aa20.89■□□□□ 0.93
CLN3-260ENST00000637578 PCDHB8Q9UN66 801 aa20.89■□□□□ 0.93
CLN3-260ENST00000637578 C2CD2Q9Y426 696 aa20.89■□□□□ 0.93
CLN3-260ENST00000637578 CLUHO75153 1309 aa20.88■□□□□ 0.93
CLN3-260ENST00000637578 H7C4K7 107 aa20.88■□□□□ 0.93
CLN3-260ENST00000637578 POLR2DO15514 142 aaKnown RBP20.88■□□□□ 0.93
CLN3-260ENST00000637578 C8AP07357 584 aa20.88■□□□□ 0.93
CLN3-260ENST00000637578 NFICP08651 508 aa20.88■□□□□ 0.93
CLN3-260ENST00000637578 GARTP22102 1010 aa20.88■□□□□ 0.93
CLN3-260ENST00000637578 GUCY2FP51841 1108 aa20.88■□□□□ 0.93
CLN3-260ENST00000637578 SIGLEC14Q08ET2 396 aa20.88■□□□□ 0.93
CLN3-260ENST00000637578 LIN9Q5TKA1 542 aa20.88■□□□□ 0.93
CLN3-260ENST00000637578 APPL2Q8NEU8 664 aa20.88■□□□□ 0.93
CLN3-260ENST00000637578 TMEM206Q9H813 350 aa20.88■□□□□ 0.93
CLN3-260ENST00000637578 FAM13BQ9NYF5 915 aa20.88■□□□□ 0.93
CLN3-260ENST00000637578 FBXL5Q9UKA1 691 aa20.88■□□□□ 0.93
CLN3-260ENST00000637578 SORCS3Q9UPU3 1222 aa20.88■□□□□ 0.93
CLN3-260ENST00000637578 ANO9A1A5B4 782 aa20.87■□□□□ 0.93
CLN3-260ENST00000637578 OAZ2O95190 189 aa20.87■□□□□ 0.93
CLN3-260ENST00000637578 PAX3P23760 479 aa20.87■□□□□ 0.93
CLN3-260ENST00000637578 ROR1Q01973 937 aa20.87■□□□□ 0.93
CLN3-260ENST00000637578 EHHADHQ08426 723 aa20.87■□□□□ 0.93
CLN3-260ENST00000637578 TMEM132DQ14C87 1099 aa20.87■□□□□ 0.93
CLN3-260ENST00000637578 PPM1LQ5SGD2 360 aa20.87■□□□□ 0.93
CLN3-260ENST00000637578 HFE2Q6ZVN8 426 aa20.87■□□□□ 0.93
CLN3-260ENST00000637578 BEST2Q8NFU1 509 aa20.87■□□□□ 0.93
CLN3-260ENST00000637578 FAM212AQ96EL1 285 aa20.87■□□□□ 0.93
CLN3-260ENST00000637578 PIDD1Q9HB75 910 aa20.87■□□□□ 0.93
CLN3-260ENST00000637578 RAPGEFL1Q9UHV5 662 aa20.87■□□□□ 0.93
CLN3-260ENST00000637578 MYO10Q9HD67 2058 aa20.86■□□□□ 0.93
CLN3-260ENST00000637578 TMEM221A6NGB7 291 aa20.86■□□□□ 0.93
CLN3-260ENST00000637578 M0R296 226 aa20.86■□□□□ 0.93
CLN3-260ENST00000637578 PIRO00625 290 aa20.86■□□□□ 0.93
CLN3-260ENST00000637578 HOXD13P35453 343 aa20.86■□□□□ 0.93
CLN3-260ENST00000637578 C9orf57Q5W0N0 161 aa20.86■□□□□ 0.93
CLN3-260ENST00000637578 UBALD2Q8IYN6 164 aa20.86■□□□□ 0.93
CLN3-260ENST00000637578 GLIS3Q8NEA6 775 aa20.86■□□□□ 0.93
CLN3-260ENST00000637578 SLC7A14Q8TBB6 771 aa20.86■□□□□ 0.93
CLN3-260ENST00000637578 ASIC4Q96FT7 647 aa20.86■□□□□ 0.93
CLN3-260ENST00000637578 PYM1Q9BRP8 204 aaKnown RBP20.86■□□□□ 0.93
CLN3-260ENST00000637578 EPS15L1Q9UBC2 864 aa20.86■□□□□ 0.93
CLN3-260ENST00000637578 KCNH3Q9ULD8 1083 aa20.86■□□□□ 0.93
CLN3-260ENST00000637578 ARIH1Q9Y4X5 557 aaPredicted RBP20.86■□□□□ 0.93
CLN3-260ENST00000637578 TCHHQ07283 1943 aa20.86■□□□□ 0.93
CLN3-260ENST00000637578 WDR27A2RRH5 827 aa20.85■□□□□ 0.93
CLN3-260ENST00000637578 PPEF2O14830 753 aa20.85■□□□□ 0.93
CLN3-260ENST00000637578 PRPF6O94906 941 aaKnown RBP20.85■□□□□ 0.93
CLN3-260ENST00000637578 IL18RAPO95256 599 aa20.85■□□□□ 0.93
CLN3-260ENST00000637578 ATF2P15336 505 aa20.85■□□□□ 0.93
CLN3-260ENST00000637578 CMA1P23946 247 aa20.85■□□□□ 0.93
CLN3-260ENST00000637578 LILRA4P59901 499 aa20.85■□□□□ 0.93
CLN3-260ENST00000637578 MTMR3Q13615 1198 aa20.85■□□□□ 0.93
CLN3-260ENST00000637578 EPM2AIP1Q7L775 607 aaPredicted RBP20.85■□□□□ 0.93
CLN3-260ENST00000637578 NT5DC4Q86YG4 428 aa20.85■□□□□ 0.93
CLN3-260ENST00000637578 SYCP3Q8IZU3 236 aa20.85■□□□□ 0.93
CLN3-260ENST00000637578 ZSWIM2Q8NEG5 633 aa20.85■□□□□ 0.93
CLN3-260ENST00000637578 HPS3Q969F9 1004 aa20.85■□□□□ 0.93
CLN3-260ENST00000637578 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP20.85■□□□□ 0.93
CLN3-260ENST00000637578 A0A1W2PQ27 194 aa20.85■□□□□ 0.93
CLN3-260ENST00000637578 A0A1W2PQ64 194 aa20.85■□□□□ 0.93
CLN3-260ENST00000637578 A0A1W2PQD8 194 aa20.85■□□□□ 0.93
CLN3-260ENST00000637578 ARHGEF37A1IGU5 675 aa20.85■□□□□ 0.93
CLN3-260ENST00000637578 EIF3DO15371 548 aaKnown RBP eCLIP20.85■□□□□ 0.93
CLN3-260ENST00000637578 LDHAP00338 332 aaKnown RBP20.85■□□□□ 0.93
CLN3-260ENST00000637578 ASGR2P07307 311 aa20.85■□□□□ 0.93
CLN3-260ENST00000637578 ASIC1P78348 528 aa20.85■□□□□ 0.93
CLN3-260ENST00000637578 CTXN3Q4LDR2 81 aa20.85■□□□□ 0.93
CLN3-260ENST00000637578 TPGS2Q68CL5 300 aa20.85■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms