RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 ZNF662Q6ZS27 426 aa19.78■□□□□ 0.76
CLN3-254ENST00000637050 LRRC8DQ7L1W4 858 aa19.78■□□□□ 0.76
CLN3-254ENST00000637050 ANKRD33Q7Z3H0 272 aa19.78■□□□□ 0.76
CLN3-254ENST00000637050 MRPL10Q7Z7H8 261 aaKnown RBP19.78■□□□□ 0.76
CLN3-254ENST00000637050 HACE1Q8IYU2 909 aa19.78■□□□□ 0.76
CLN3-254ENST00000637050 TMEM130Q8N3G9 435 aa19.78■□□□□ 0.76
CLN3-254ENST00000637050 OLIG1Q8TAK6 271 aa19.78■□□□□ 0.76
CLN3-254ENST00000637050 FAXDC2Q96IV6 333 aa19.78■□□□□ 0.76
CLN3-254ENST00000637050 NIF3L1Q9GZT8 377 aa19.78■□□□□ 0.76
CLN3-254ENST00000637050 KLK14Q9P0G3 267 aa19.78■□□□□ 0.76
CLN3-254ENST00000637050 PDCD11Q14690 1871 aaKnown RBP19.78■□□□□ 0.76
CLN3-254ENST00000637050 A0A0U1RQJ8 604 aa19.78■□□□□ 0.76
CLN3-254ENST00000637050 CYP26A1O43174 497 aa19.78■□□□□ 0.76
CLN3-254ENST00000637050 OFD1O75665 1012 aa19.78■□□□□ 0.76
CLN3-254ENST00000637050 COL6A1P12109 1028 aa19.78■□□□□ 0.76
CLN3-254ENST00000637050 USP8P40818 1118 aa19.78■□□□□ 0.76
CLN3-254ENST00000637050 GJA8P48165 433 aa19.78■□□□□ 0.76
CLN3-254ENST00000637050 GUCY2FP51841 1108 aa19.78■□□□□ 0.76
CLN3-254ENST00000637050 RBP5P82980 135 aa19.78■□□□□ 0.76
CLN3-254ENST00000637050 BMS1Q14692 1282 aaKnown RBP19.78■□□□□ 0.76
CLN3-254ENST00000637050 UBR7Q8N806 425 aa19.78■□□□□ 0.76
CLN3-254ENST00000637050 ATRIPQ8WXE1 791 aa19.78■□□□□ 0.76
CLN3-254ENST00000637050 C16orf45Q96MC5 204 aaPredicted RBP19.78■□□□□ 0.76
CLN3-254ENST00000637050 UBQLN1Q9UMX0 589 aaKnown RBP19.78■□□□□ 0.76
CLN3-254ENST00000637050 CNTN6Q9UQ52 1028 aa19.78■□□□□ 0.76
CLN3-254ENST00000637050 PITPNM1O00562 1244 aa19.77■□□□□ 0.76
CLN3-254ENST00000637050 TLR3O15455 904 aaKnown RBP19.77■□□□□ 0.76
CLN3-254ENST00000637050 STAU1O95793 577 aaKnown RBP19.77■□□□□ 0.76
CLN3-254ENST00000637050 ITGA4P13612 1032 aa19.77■□□□□ 0.76
CLN3-254ENST00000637050 POLR2BP30876 1174 aaKnown RBP19.77■□□□□ 0.76
CLN3-254ENST00000637050 PTPN14Q15678 1187 aa19.77■□□□□ 0.76
CLN3-254ENST00000637050 GLRA4Q5JXX5 417 aa19.77■□□□□ 0.76
CLN3-254ENST00000637050 C1orf53Q5VUE5 145 aa19.77■□□□□ 0.76
CLN3-254ENST00000637050 VPS36Q86VN1 386 aa19.77■□□□□ 0.76
CLN3-254ENST00000637050 BEST2Q8NFU1 509 aa19.77■□□□□ 0.76
CLN3-254ENST00000637050 ADAM2Q99965 735 aa19.77■□□□□ 0.76
CLN3-254ENST00000637050 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP19.77■□□□□ 0.76
CLN3-254ENST00000637050 NENFQ9UMX5 172 aa19.77■□□□□ 0.76
CLN3-254ENST00000637050 AGAP1Q9UPQ3 857 aa19.77■□□□□ 0.76
CLN3-254ENST00000637050 PCDHA13Q9Y5I0 950 aa19.77■□□□□ 0.76
CLN3-254ENST00000637050 TRIP11Q15643 1979 aa19.76■□□□□ 0.75
CLN3-254ENST00000637050 A0A0U1RQF3 1178 aa19.76■□□□□ 0.75
CLN3-254ENST00000637050 PQBP1O60828 265 aaKnown RBP19.76■□□□□ 0.75
CLN3-254ENST00000637050 CLSTN1O94985 981 aa19.76■□□□□ 0.75
CLN3-254ENST00000637050 ARHGAP25P42331 645 aa19.76■□□□□ 0.75
CLN3-254ENST00000637050 ASPAP45381 313 aa19.76■□□□□ 0.75
CLN3-254ENST00000637050 VAV2P52735 878 aa19.76■□□□□ 0.75
CLN3-254ENST00000637050 ZNF667Q5HYK9 610 aa19.76■□□□□ 0.75
CLN3-254ENST00000637050 ANKLE1Q8NAG6 615 aa19.76■□□□□ 0.75
CLN3-254ENST00000637050 SLC30A5Q8TAD4 765 aa19.76■□□□□ 0.75
CLN3-254ENST00000637050 EPS8L1Q8TE68 723 aa19.76■□□□□ 0.75
CLN3-254ENST00000637050 C18orf25Q96B23 403 aaPredicted RBP19.76■□□□□ 0.75
CLN3-254ENST00000637050 IFIH1Q9BYX4 1025 aaKnown RBP19.76■□□□□ 0.75
CLN3-254ENST00000637050 TUBGCP4Q9UGJ1 667 aa19.76■□□□□ 0.75
CLN3-254ENST00000637050 NOCTQ9UK39 431 aaKnown RBP19.76■□□□□ 0.75
CLN3-254ENST00000637050 MEIS3P2A8K0S8 358 aa19.75■□□□□ 0.75
CLN3-254ENST00000637050 DDX3XO00571 662 aaKnown RBP eCLIP19.75■□□□□ 0.75
CLN3-254ENST00000637050 XPOTO43592 962 aaKnown RBP19.75■□□□□ 0.75
CLN3-254ENST00000637050 KRT5P13647 590 aa19.75■□□□□ 0.75
CLN3-254ENST00000637050 ATN1P54259 1190 aaPredicted RBP19.75■□□□□ 0.75
CLN3-254ENST00000637050 KIAA1328Q86T90 577 aa19.75■□□□□ 0.75
CLN3-254ENST00000637050 SLC47A2Q86VL8 602 aa19.75■□□□□ 0.75
CLN3-254ENST00000637050 HPDLQ96IR7 371 aa19.75■□□□□ 0.75
CLN3-254ENST00000637050 TOX2Q96NM4 488 aa19.75■□□□□ 0.75
CLN3-254ENST00000637050 AGPAT1Q99943 283 aa19.75■□□□□ 0.75
CLN3-254ENST00000637050 BCO2Q9BYV7 579 aa19.75■□□□□ 0.75
CLN3-254ENST00000637050 LZTFL1Q9NQ48 299 aa19.75■□□□□ 0.75
CLN3-254ENST00000637050 NAGPAQ9UK23 515 aa19.75■□□□□ 0.75
CLN3-254ENST00000637050 GIT1Q9Y2X7 761 aa19.75■□□□□ 0.75
CLN3-254ENST00000637050 R3HCC1Q9Y3T6 440 aaKnown RBP19.75■□□□□ 0.75
CLN3-254ENST00000637050 RCCD1A6NED2 376 aa19.75■□□□□ 0.75
CLN3-254ENST00000637050 PTGESO14684 152 aa19.75■□□□□ 0.75
CLN3-254ENST00000637050 SKIP12755 728 aa19.75■□□□□ 0.75
CLN3-254ENST00000637050 CYP11B1P15538 503 aa19.75■□□□□ 0.75
CLN3-254ENST00000637050 CYP3A5P20815 502 aa19.75■□□□□ 0.75
CLN3-254ENST00000637050 MAGEA1P43355 309 aa19.75■□□□□ 0.75
CLN3-254ENST00000637050 WDR72Q3MJ13 1102 aa19.75■□□□□ 0.75
CLN3-254ENST00000637050 AGMOQ6ZNB7 445 aa19.75■□□□□ 0.75
CLN3-254ENST00000637050 NOP9Q86U38 636 aaKnown RBP19.75■□□□□ 0.75
CLN3-254ENST00000637050 LNX1Q8TBB1 728 aaPredicted RBP19.75■□□□□ 0.75
CLN3-254ENST00000637050 DIS3LQ8TF46 1054 aaKnown RBP19.75■□□□□ 0.75
CLN3-254ENST00000637050 SLC20A1Q8WUM9 679 aa19.75■□□□□ 0.75
CLN3-254ENST00000637050 RNF19AQ9NV58 838 aa19.75■□□□□ 0.75
CLN3-254ENST00000637050 ANO9A1A5B4 782 aa19.74■□□□□ 0.75
CLN3-254ENST00000637050 KIF2AO00139 706 aaPredicted RBP19.74■□□□□ 0.75
CLN3-254ENST00000637050 ABL1P00519 1130 aa19.74■□□□□ 0.75
CLN3-254ENST00000637050 ATF7P17544 494 aaPredicted RBP19.74■□□□□ 0.75
CLN3-254ENST00000637050 BPIFB4P59827 614 aa19.74■□□□□ 0.75
CLN3-254ENST00000637050 GPNMBQ14956 572 aa19.74■□□□□ 0.75
CLN3-254ENST00000637050 NAB2Q15742 525 aa19.74■□□□□ 0.75
CLN3-254ENST00000637050 ARHGAP29Q52LW3 1261 aa19.74■□□□□ 0.75
CLN3-254ENST00000637050 C10orf76Q5T2E6 689 aa19.74■□□□□ 0.75
CLN3-254ENST00000637050 GLYCTKQ8IVS8 523 aa19.74■□□□□ 0.75
CLN3-254ENST00000637050 LRRC52Q8N7C0 313 aa19.74■□□□□ 0.75
CLN3-254ENST00000637050 GSTCDQ8NEC7 633 aa19.74■□□□□ 0.75
CLN3-254ENST00000637050 ZFP42Q96MM3 310 aa19.74■□□□□ 0.75
CLN3-254ENST00000637050 PPP1R10Q96QC0 940 aaKnown RBP19.74■□□□□ 0.75
CLN3-254ENST00000637050 LACRTQ9GZZ8 138 aa19.74■□□□□ 0.75
CLN3-254ENST00000637050 ACP6Q9NPH0 428 aa19.74■□□□□ 0.75
CLN3-254ENST00000637050 LUC7LQ9NQ29 371 aaKnown RBP19.74■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 67.7 ms