RNA–Protein interactions for RNA: ENST00000636759.1

SCN1A-213, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 3,606 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-213ENST00000636759 DDI1Q8WTU0 396 aa7.23□□□□□ -1.25
SCN1A-213ENST00000636759 CNNM1Q9NRU3 951 aa7.23□□□□□ -1.25
SCN1A-213ENST00000636759 GIN1Q9NXP7 522 aa7.23□□□□□ -1.25
SCN1A-213ENST00000636759 SUGT1Q9Y2Z0 365 aa7.23□□□□□ -1.25
SCN1A-213ENST00000636759 IRS2Q9Y4H2 1338 aa7.23□□□□□ -1.25
SCN1A-213ENST00000636759 SLC26A4O43511 780 aa7.22□□□□□ -1.25
SCN1A-213ENST00000636759 GH1P01241 217 aa7.22□□□□□ -1.25
SCN1A-213ENST00000636759 ZNF12P17014 697 aa7.22□□□□□ -1.25
SCN1A-213ENST00000636759 TAC1P20366 129 aa7.22□□□□□ -1.25
SCN1A-213ENST00000636759 IRX4P78413 519 aa7.22□□□□□ -1.25
SCN1A-213ENST00000636759 ARID5AQ03989 594 aa7.22□□□□□ -1.25
SCN1A-213ENST00000636759 KIAA1755Q5JYT7 1200 aa7.22□□□□□ -1.25
SCN1A-213ENST00000636759 PCNX4Q63HM2 1172 aa7.22□□□□□ -1.25
SCN1A-213ENST00000636759 SNRNP48Q6IEG0 339 aaKnown RBP7.22□□□□□ -1.25
SCN1A-213ENST00000636759 ANKRD35Q8N283 1001 aa7.22□□□□□ -1.25
SCN1A-213ENST00000636759 GSDMBQ8TAX9 411 aa7.22□□□□□ -1.25
SCN1A-213ENST00000636759 NSL1Q96IY1 281 aa7.22□□□□□ -1.25
SCN1A-213ENST00000636759 SERPINB12Q96P63 405 aa7.22□□□□□ -1.25
SCN1A-213ENST00000636759 MIPEPQ99797 713 aa7.22□□□□□ -1.25
SCN1A-213ENST00000636759 AASDHPPTQ9NRN7 309 aa7.22□□□□□ -1.25
SCN1A-213ENST00000636759 TMOD2Q9NZR1 351 aa7.22□□□□□ -1.25
SCN1A-213ENST00000636759 STXBP5LQ9Y2K9 1186 aa7.22□□□□□ -1.25
SCN1A-213ENST00000636759 EP400Q96L91 3159 aa7.22□□□□□ -1.25
SCN1A-213ENST00000636759 C15orf38-AP3S2A0A0A6YYH1 394 aa7.22□□□□□ -1.25
SCN1A-213ENST00000636759 TTC34A8MYJ7 566 aa7.22□□□□□ -1.25
SCN1A-213ENST00000636759 TNFRSF10AO00220 468 aa7.22□□□□□ -1.25
SCN1A-213ENST00000636759 PRKAB2O43741 272 aa7.22□□□□□ -1.25
SCN1A-213ENST00000636759 ONECUT3O60422 494 aaPredicted RBP7.22□□□□□ -1.25
SCN1A-213ENST00000636759 FGGP02679 453 aa7.22□□□□□ -1.25
SCN1A-213ENST00000636759 SERPING1P05155 500 aa7.22□□□□□ -1.25
SCN1A-213ENST00000636759 VCLP18206 1134 aa7.22□□□□□ -1.25
SCN1A-213ENST00000636759 NUP107P57740 925 aa7.22□□□□□ -1.25
SCN1A-213ENST00000636759 FAM98CQ17RN3 349 aaKnown RBP7.22□□□□□ -1.25
SCN1A-213ENST00000636759 SPDYAQ5MJ70 313 aa7.22□□□□□ -1.25
SCN1A-213ENST00000636759 WDR45BQ5MNZ6 344 aa7.22□□□□□ -1.25
SCN1A-213ENST00000636759 CGB2Q6NT52 195 aa7.22□□□□□ -1.25
SCN1A-213ENST00000636759 VSTM1Q6UX27 236 aa7.22□□□□□ -1.25
SCN1A-213ENST00000636759 ARPINQ7Z6K5 226 aa7.22□□□□□ -1.25
SCN1A-213ENST00000636759 LRRC6Q86X45 466 aa7.22□□□□□ -1.25
SCN1A-213ENST00000636759 SRRM1Q8IYB3 904 aaKnown RBP7.22□□□□□ -1.25
SCN1A-213ENST00000636759 ENAHQ8N8S7 591 aaPredicted RBP7.22□□□□□ -1.25
SCN1A-213ENST00000636759 SPATA5Q8NB90 893 aa7.22□□□□□ -1.25
SCN1A-213ENST00000636759 NUP85Q9BW27 656 aa7.22□□□□□ -1.25
SCN1A-213ENST00000636759 TXLNGYQ9BZA5 131 aa7.22□□□□□ -1.25
SCN1A-213ENST00000636759 KLHL4Q9C0H6 718 aa7.22□□□□□ -1.25
SCN1A-213ENST00000636759 VTA1Q9NP79 307 aa7.22□□□□□ -1.25
SCN1A-213ENST00000636759 UBN1Q9NPG3 1134 aa7.22□□□□□ -1.25
SCN1A-213ENST00000636759 RSPH10B2B2RC85 870 aa7.22□□□□□ -1.25
SCN1A-213ENST00000636759 RIPK2O43353 540 aa7.22□□□□□ -1.25
SCN1A-213ENST00000636759 PHF2O75151 1096 aa7.22□□□□□ -1.25
SCN1A-213ENST00000636759 MTRF1O75570 445 aaKnown RBP7.22□□□□□ -1.25
SCN1A-213ENST00000636759 RSPH10BP0C881 870 aa7.22□□□□□ -1.25
SCN1A-213ENST00000636759 CREB1P16220 341 aa7.22□□□□□ -1.25
SCN1A-213ENST00000636759 PMS1P54277 932 aaKnown RBP7.22□□□□□ -1.25
SCN1A-213ENST00000636759 CYP4A11Q02928 519 aa7.22□□□□□ -1.25
SCN1A-213ENST00000636759 TRMT5Q32P41 509 aaKnown RBP7.22□□□□□ -1.25
SCN1A-213ENST00000636759 ANKRD20A4Q4UJ75 823 aa7.22□□□□□ -1.25
SCN1A-213ENST00000636759 TMEM63BQ5T3F8 832 aa7.22□□□□□ -1.25
SCN1A-213ENST00000636759 MTDHQ86UE4 582 aaKnown RBP7.22□□□□□ -1.25
SCN1A-213ENST00000636759 LCORLQ8N3X6 602 aa7.22□□□□□ -1.25
SCN1A-213ENST00000636759 ICA1LQ8NDH6 482 aa7.22□□□□□ -1.25
SCN1A-213ENST00000636759 ZFP28Q8NHY6 868 aa7.22□□□□□ -1.25
SCN1A-213ENST00000636759 SUN5Q8TC36 379 aa7.22□□□□□ -1.25
SCN1A-213ENST00000636759 CALML6Q8TD86 181 aa7.22□□□□□ -1.25
SCN1A-213ENST00000636759 SEC14L1Q92503 715 aa7.22□□□□□ -1.25
SCN1A-213ENST00000636759 DDX24Q9GZR7 859 aaKnown RBP eCLIP7.22□□□□□ -1.25
SCN1A-213ENST00000636759 ZBTB21Q9ULJ3 1066 aa7.22□□□□□ -1.25
SCN1A-213ENST00000636759 CLEC11AQ9Y240 323 aa7.22□□□□□ -1.25
SCN1A-213ENST00000636759 NR2E3Q9Y5X4 410 aa7.22□□□□□ -1.25
SCN1A-213ENST00000636759 MAD1L1Q9Y6D9 718 aa7.22□□□□□ -1.25
SCN1A-213ENST00000636759 F8W8V4 182 aa7.21□□□□□ -1.25
SCN1A-213ENST00000636759 ACSL3O95573 720 aa7.21□□□□□ -1.25
SCN1A-213ENST00000636759 SERPINB6P35237 376 aa7.21□□□□□ -1.25
SCN1A-213ENST00000636759 CSE1LP55060 971 aaKnown RBP7.21□□□□□ -1.25
SCN1A-213ENST00000636759 EVX2Q03828 476 aa7.21□□□□□ -1.25
SCN1A-213ENST00000636759 CALCOCO2Q13137 446 aa7.21□□□□□ -1.25
SCN1A-213ENST00000636759 SPARCL1Q14515 664 aa7.21□□□□□ -1.25
SCN1A-213ENST00000636759 ARHGEF6Q15052 776 aa7.21□□□□□ -1.25
SCN1A-213ENST00000636759 TGFBIQ15582 683 aa7.21□□□□□ -1.25
SCN1A-213ENST00000636759 MYLK3Q32MK0 819 aa7.21□□□□□ -1.25
SCN1A-213ENST00000636759 C1orf146Q5VVC0 180 aa7.21□□□□□ -1.25
SCN1A-213ENST00000636759 KAZNQ674X7 775 aa7.21□□□□□ -1.25
SCN1A-213ENST00000636759 NEK10Q6ZWH5 1172 aa7.21□□□□□ -1.25
SCN1A-213ENST00000636759 SYCE1Q8N0S2 351 aa7.21□□□□□ -1.25
SCN1A-213ENST00000636759 P2RX5Q93086 422 aa7.21□□□□□ -1.25
SCN1A-213ENST00000636759 EME1Q96AY2 570 aa7.21□□□□□ -1.25
SCN1A-213ENST00000636759 MAELQ96JY0 434 aaKnown RBP7.21□□□□□ -1.25
SCN1A-213ENST00000636759 CCDC77Q9BR77 488 aa7.21□□□□□ -1.25
SCN1A-213ENST00000636759 OSBPL6Q9BZF3 934 aa7.21□□□□□ -1.25
SCN1A-213ENST00000636759 PAIP1Q9H074 479 aaKnown RBP7.21□□□□□ -1.25
SCN1A-213ENST00000636759 EPB41L4BQ9H329 900 aa7.21□□□□□ -1.25
SCN1A-213ENST00000636759 GOLPH3Q9H4A6 298 aa7.21□□□□□ -1.25
SCN1A-213ENST00000636759 NIP7Q9Y221 180 aaKnown RBP eCLIP7.21□□□□□ -1.25
SCN1A-213ENST00000636759 QSER1Q2KHR3 1735 aa7.21□□□□□ -1.25
SCN1A-213ENST00000636759 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP7.21□□□□□ -1.26
SCN1A-213ENST00000636759 UNCXA6NJT0 531 aa7.21□□□□□ -1.26
SCN1A-213ENST00000636759 GOLGA8CPA6NN73 597 aa7.21□□□□□ -1.26
SCN1A-213ENST00000636759 STAM2O75886 525 aa7.21□□□□□ -1.26
SCN1A-213ENST00000636759 ESRRBO95718 433 aa7.21□□□□□ -1.26
SCN1A-213ENST00000636759 RARGP13631 454 aa7.21□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms