RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 XPO6Q96QU8 1125 aaKnown RBP15.41■□□□□ 0.06
SHROOM1-208ENST00000617339 IMPG2Q9BZV3 1241 aa15.41■□□□□ 0.06
SHROOM1-208ENST00000617339 ISCUQ9H1K1 167 aa15.41■□□□□ 0.06
SHROOM1-208ENST00000617339 SPATS2LQ9NUQ6 558 aaKnown RBP15.41■□□□□ 0.06
SHROOM1-208ENST00000617339 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP15.41■□□□□ 0.06
SHROOM1-208ENST00000617339 ANKRD62A6NC57 917 aa15.41■□□□□ 0.06
SHROOM1-208ENST00000617339 THAP12O43422 761 aa15.41■□□□□ 0.06
SHROOM1-208ENST00000617339 EDN1P05305 212 aa15.41■□□□□ 0.06
SHROOM1-208ENST00000617339 POTEJP0CG39 1038 aa15.41■□□□□ 0.06
SHROOM1-208ENST00000617339 MAP3K10Q02779 954 aa15.41■□□□□ 0.06
SHROOM1-208ENST00000617339 ZKSCAN8Q15776 578 aaPredicted RBP15.41■□□□□ 0.06
SHROOM1-208ENST00000617339 CAPRIN2Q6IMN6 1127 aaKnown RBP15.41■□□□□ 0.06
SHROOM1-208ENST00000617339 BZW1Q7L1Q6 419 aaKnown RBP15.41■□□□□ 0.06
SHROOM1-208ENST00000617339 LRRC34Q8IZ02 419 aa15.41■□□□□ 0.06
SHROOM1-208ENST00000617339 ANKRD13AQ8IZ07 590 aa15.41■□□□□ 0.06
SHROOM1-208ENST00000617339 GPRASP2Q96D09 838 aa15.41■□□□□ 0.06
SHROOM1-208ENST00000617339 SPATA33Q96N06 139 aa15.41■□□□□ 0.06
SHROOM1-208ENST00000617339 FOCADQ5VW36 1801 aa15.4■□□□□ 0.06
SHROOM1-208ENST00000617339 SOWAHBA6NEL2 793 aa15.4■□□□□ 0.06
SHROOM1-208ENST00000617339 FGFR4P22455 802 aa15.4■□□□□ 0.06
SHROOM1-208ENST00000617339 RRM1P23921 792 aa15.4■□□□□ 0.06
SHROOM1-208ENST00000617339 IRX1P78414 480 aaPredicted RBP15.4■□□□□ 0.06
SHROOM1-208ENST00000617339 CYP24A1Q07973 514 aa15.4■□□□□ 0.06
SHROOM1-208ENST00000617339 CCDC38Q502W7 563 aa15.4■□□□□ 0.06
SHROOM1-208ENST00000617339 ABHD15Q6UXT9 468 aa15.4■□□□□ 0.06
SHROOM1-208ENST00000617339 TAS1R3Q7RTX0 852 aa15.4■□□□□ 0.06
SHROOM1-208ENST00000617339 RNF169Q8NCN4 708 aa15.4■□□□□ 0.06
SHROOM1-208ENST00000617339 MLXIPLQ9NP71 852 aa15.4■□□□□ 0.06
SHROOM1-208ENST00000617339 ABCF3Q9NUQ8 709 aa15.4■□□□□ 0.06
SHROOM1-208ENST00000617339 H0YGN5 161 aa15.4■□□□□ 0.06
SHROOM1-208ENST00000617339 GOLGA8SH3BPF8 625 aa15.4■□□□□ 0.06
SHROOM1-208ENST00000617339 B4GALT5O43286 388 aa15.4■□□□□ 0.06
SHROOM1-208ENST00000617339 OATP04181 439 aa15.4■□□□□ 0.06
SHROOM1-208ENST00000617339 MAPTP10636 758 aaKnown RBP15.4■□□□□ 0.06
SHROOM1-208ENST00000617339 PYGMP11217 842 aa15.4■□□□□ 0.06
SHROOM1-208ENST00000617339 ALDH5A1P51649 535 aaPredicted RBP15.4■□□□□ 0.06
SHROOM1-208ENST00000617339 DCAF12L1Q5VU92 463 aa15.4■□□□□ 0.06
SHROOM1-208ENST00000617339 SYCE1Q8N0S2 351 aa15.4■□□□□ 0.06
SHROOM1-208ENST00000617339 MCPH1Q8NEM0 835 aa15.4■□□□□ 0.06
SHROOM1-208ENST00000617339 ZNF483Q8TF39 744 aaPredicted RBP15.4■□□□□ 0.06
SHROOM1-208ENST00000617339 IWS1Q96ST2 819 aa15.4■□□□□ 0.06
SHROOM1-208ENST00000617339 ANKEF1Q9NU02 776 aa15.4■□□□□ 0.06
SHROOM1-208ENST00000617339 GGA2Q9UJY4 613 aa15.4■□□□□ 0.06
SHROOM1-208ENST00000617339 SYNPO2Q9UMS6 1093 aa15.4■□□□□ 0.06
SHROOM1-208ENST00000617339 C15orf41Q9Y2V0 281 aa15.4■□□□□ 0.06
SHROOM1-208ENST00000617339 NFS1Q9Y697 457 aa15.4■□□□□ 0.06
SHROOM1-208ENST00000617339 LAMA2P24043 3122 aaKnown RBP15.4■□□□□ 0.06
SHROOM1-208ENST00000617339 CST3P01034 146 aaPredicted RBP15.4■□□□□ 0.06
SHROOM1-208ENST00000617339 CHRNB2P17787 502 aa15.4■□□□□ 0.06
SHROOM1-208ENST00000617339 MAPK4P31152 587 aa15.4■□□□□ 0.06
SHROOM1-208ENST00000617339 RNF25Q96BH1 459 aaPredicted RBP15.4■□□□□ 0.06
SHROOM1-208ENST00000617339 MMP19Q99542 508 aa15.4■□□□□ 0.06
SHROOM1-208ENST00000617339 SAMD15Q9P1V8 674 aa15.4■□□□□ 0.06
SHROOM1-208ENST00000617339 CCL15-CCL14A0A0B4J2E2 113 aa15.39■□□□□ 0.05
SHROOM1-208ENST00000617339 TXNP10599 105 aaKnown RBP15.39■□□□□ 0.05
SHROOM1-208ENST00000617339 CCL15Q16663 113 aa15.39■□□□□ 0.05
SHROOM1-208ENST00000617339 THEMIS2Q5TEJ8 643 aa15.39■□□□□ 0.05
SHROOM1-208ENST00000617339 AP1ARQ63HQ0 302 aa15.39■□□□□ 0.05
SHROOM1-208ENST00000617339 MAP4K3Q8IVH8 894 aa15.39■□□□□ 0.05
SHROOM1-208ENST00000617339 SPDYE1Q8NFV5 336 aaPredicted RBP15.39■□□□□ 0.05
SHROOM1-208ENST00000617339 MTMR12Q9C0I1 747 aa15.39■□□□□ 0.05
SHROOM1-208ENST00000617339 UTP11Q9Y3A2 253 aaKnown RBP15.39■□□□□ 0.05
SHROOM1-208ENST00000617339 SHBGP04278 402 aa15.39■□□□□ 0.05
SHROOM1-208ENST00000617339 LRRC14Q15048 493 aa15.39■□□□□ 0.05
SHROOM1-208ENST00000617339 ATP13A4Q4VNC1 1196 aa15.39■□□□□ 0.05
SHROOM1-208ENST00000617339 DDX55Q8NHQ9 600 aaKnown RBP eCLIP15.39■□□□□ 0.05
SHROOM1-208ENST00000617339 CDCA5Q96FF9 252 aa15.39■□□□□ 0.05
SHROOM1-208ENST00000617339 PRMT1Q99873 361 aaKnown RBP15.39■□□□□ 0.05
SHROOM1-208ENST00000617339 HAPLN2Q9GZV7 340 aa15.39■□□□□ 0.05
SHROOM1-208ENST00000617339 PORCNQ9H237 461 aa15.39■□□□□ 0.05
SHROOM1-208ENST00000617339 RRAGCQ9HB90 399 aa15.39■□□□□ 0.05
SHROOM1-208ENST00000617339 AGAP1Q9UPQ3 857 aa15.39■□□□□ 0.05
SHROOM1-208ENST00000617339 DKC1O60832 514 aaKnown RBP eCLIP15.38■□□□□ 0.05
SHROOM1-208ENST00000617339 TMEM253P0C7T8 217 aa15.38■□□□□ 0.05
SHROOM1-208ENST00000617339 ECHS1P30084 290 aa15.38■□□□□ 0.05
SHROOM1-208ENST00000617339 HUNKP57058 714 aa15.38■□□□□ 0.05
SHROOM1-208ENST00000617339 FMO1Q01740 532 aa15.38■□□□□ 0.05
SHROOM1-208ENST00000617339 LRIG3Q6UXM1 1119 aa15.38■□□□□ 0.05
SHROOM1-208ENST00000617339 REPS2Q8NFH8 660 aa15.38■□□□□ 0.05
SHROOM1-208ENST00000617339 PWWP2AQ96N64 755 aa15.38■□□□□ 0.05
SHROOM1-208ENST00000617339 SYNCQ9H7C4 482 aa15.38■□□□□ 0.05
SHROOM1-208ENST00000617339 NRBP2Q9NSY0 501 aa15.38■□□□□ 0.05
SHROOM1-208ENST00000617339 GTPBP10A4D1E9 387 aaKnown RBP15.38■□□□□ 0.05
SHROOM1-208ENST00000617339 DNAJC8O75937 253 aaPredicted RBP15.38■□□□□ 0.05
SHROOM1-208ENST00000617339 RAP1GAPP47736 663 aa15.38■□□□□ 0.05
SHROOM1-208ENST00000617339 NCKAP1LP55160 1127 aa15.38■□□□□ 0.05
SHROOM1-208ENST00000617339 CDH8P55286 799 aa15.38■□□□□ 0.05
SHROOM1-208ENST00000617339 DR1Q01658 176 aa15.38■□□□□ 0.05
SHROOM1-208ENST00000617339 SYCP2LQ5T4T6 812 aa15.38■□□□□ 0.05
SHROOM1-208ENST00000617339 SESTD1Q86VW0 696 aa15.38■□□□□ 0.05
SHROOM1-208ENST00000617339 C2orf69Q8N8R5 385 aa15.38■□□□□ 0.05
SHROOM1-208ENST00000617339 POLR2AP24928 1970 aaKnown RBP15.38■□□□□ 0.05
SHROOM1-208ENST00000617339 SPATA31C2B4DYI2 1134 aa15.38■□□□□ 0.05
SHROOM1-208ENST00000617339 PLCB3Q01970 1234 aa15.38■□□□□ 0.05
SHROOM1-208ENST00000617339 TRPC3Q13507 836 aa15.38■□□□□ 0.05
SHROOM1-208ENST00000617339 TDRD10Q5VZ19 366 aaKnown RBP15.38■□□□□ 0.05
SHROOM1-208ENST00000617339 DYDC1Q8WWB3 177 aa15.38■□□□□ 0.05
SHROOM1-208ENST00000617339 CALR3Q96L12 384 aaKnown RBP15.38■□□□□ 0.05
SHROOM1-208ENST00000617339 ZNF570Q96NI8 536 aa15.38■□□□□ 0.05
SHROOM1-208ENST00000617339 KDM4CQ9H3R0 1056 aa15.38■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms