RNA–Protein interactions for RNA: ENST00000595974.5

TRIM28-206, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 665 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-206ENST00000595974 NFICP08651 508 aa17.59■□□□□ 0.41
TRIM28-206ENST00000595974 AFMP43652 599 aa17.59■□□□□ 0.41
TRIM28-206ENST00000595974 KANK3Q6NY19 840 aa17.59■□□□□ 0.41
TRIM28-206ENST00000595974 ARMCX5Q6P1M9 558 aa17.59■□□□□ 0.41
TRIM28-206ENST00000595974 CRELD2Q6UXH1 353 aaPredicted RBP17.59■□□□□ 0.41
TRIM28-206ENST00000595974 EPM2AIP1Q7L775 607 aaPredicted RBP17.59■□□□□ 0.41
TRIM28-206ENST00000595974 NT5DC4Q86YG4 428 aa17.59■□□□□ 0.41
TRIM28-206ENST00000595974 KREMEN2Q8NCW0 462 aa17.59■□□□□ 0.41
TRIM28-206ENST00000595974 GLIS3Q8NEA6 775 aa17.59■□□□□ 0.41
TRIM28-206ENST00000595974 HPS3Q969F9 1004 aa17.59■□□□□ 0.41
TRIM28-206ENST00000595974 C1QTNF1Q9BXJ1 281 aa17.59■□□□□ 0.41
TRIM28-206ENST00000595974 BLZF1Q9H2G9 400 aa17.59■□□□□ 0.41
TRIM28-206ENST00000595974 SERTAD1Q9UHV2 236 aa17.59■□□□□ 0.41
TRIM28-206ENST00000595974 DOCK6Q96HP0 2047 aa17.59■□□□□ 0.41
TRIM28-206ENST00000595974 A0A1W2PQ27 194 aa17.58■□□□□ 0.4
TRIM28-206ENST00000595974 A0A1W2PQ64 194 aa17.58■□□□□ 0.4
TRIM28-206ENST00000595974 A0A1W2PQD8 194 aa17.58■□□□□ 0.4
TRIM28-206ENST00000595974 PI4K2BG5E9Z4 385 aa17.58■□□□□ 0.4
TRIM28-206ENST00000595974 DCXO43602 365 aa17.58■□□□□ 0.4
TRIM28-206ENST00000595974 MYL1P05976 194 aa17.58■□□□□ 0.4
TRIM28-206ENST00000595974 WEE2P0C1S8 567 aa17.58■□□□□ 0.4
TRIM28-206ENST00000595974 ALADP13716 330 aa17.58■□□□□ 0.4
TRIM28-206ENST00000595974 PAX3P23760 479 aa17.58■□□□□ 0.4
TRIM28-206ENST00000595974 CASP1P29466 404 aa17.58■□□□□ 0.4
TRIM28-206ENST00000595974 AARSP49588 968 aaKnown RBP eCLIP17.58■□□□□ 0.4
TRIM28-206ENST00000595974 CUL4BQ13620 913 aa17.58■□□□□ 0.4
TRIM28-206ENST00000595974 RAB33AQ14088 237 aa17.58■□□□□ 0.4
TRIM28-206ENST00000595974 VARS2Q5ST30 1063 aaKnown RBP17.58■□□□□ 0.4
TRIM28-206ENST00000595974 RNF135Q8IUD6 432 aa17.58■□□□□ 0.4
TRIM28-206ENST00000595974 BRSK2Q8IWQ3 736 aa17.58■□□□□ 0.4
TRIM28-206ENST00000595974 APPL2Q8NEU8 664 aa17.58■□□□□ 0.4
TRIM28-206ENST00000595974 SAAL1Q96ER3 474 aa17.58■□□□□ 0.4
TRIM28-206ENST00000595974 CBWD1Q9BRT8 395 aa17.58■□□□□ 0.4
TRIM28-206ENST00000595974 FAM213AQ9BRX8 229 aa17.58■□□□□ 0.4
TRIM28-206ENST00000595974 PCDHB8Q9UN66 801 aa17.58■□□□□ 0.4
TRIM28-206ENST00000595974 CCDC195A0A1B0GUA6 201 aa17.57■□□□□ 0.4
TRIM28-206ENST00000595974 H7C4K7 107 aa17.57■□□□□ 0.4
TRIM28-206ENST00000595974 M0QZQ0 153 aa17.57■□□□□ 0.4
TRIM28-206ENST00000595974 ADAM12O43184 909 aa17.57■□□□□ 0.4
TRIM28-206ENST00000595974 EXTL3O43909 919 aa17.57■□□□□ 0.4
TRIM28-206ENST00000595974 SPATA31D3P0C874 917 aa17.57■□□□□ 0.4
TRIM28-206ENST00000595974 OR1D2P34982 312 aa17.57■□□□□ 0.4
TRIM28-206ENST00000595974 SYKP43405 635 aa17.57■□□□□ 0.4
TRIM28-206ENST00000595974 GUCY2FP51841 1108 aa17.57■□□□□ 0.4
TRIM28-206ENST00000595974 LIN9Q5TKA1 542 aa17.57■□□□□ 0.4
TRIM28-206ENST00000595974 SLC8B1Q6J4K2 584 aa17.57■□□□□ 0.4
TRIM28-206ENST00000595974 SPATA31D4Q6ZUB0 917 aa17.57■□□□□ 0.4
TRIM28-206ENST00000595974 CCDC149Q6ZUS6 474 aa17.57■□□□□ 0.4
TRIM28-206ENST00000595974 GRAMD1CQ8IYS0 662 aa17.57■□□□□ 0.4
TRIM28-206ENST00000595974 ZNF507Q8TCN5 953 aa17.57■□□□□ 0.4
TRIM28-206ENST00000595974 USTQ9Y2C2 406 aa17.57■□□□□ 0.4
TRIM28-206ENST00000595974 CDY1Q9Y6F8 540 aa17.57■□□□□ 0.4
TRIM28-206ENST00000595974 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP17.56■□□□□ 0.4
TRIM28-206ENST00000595974 RFPL2O75678 378 aa17.56■□□□□ 0.4
TRIM28-206ENST00000595974 ZMYND10O75800 440 aa17.56■□□□□ 0.4
TRIM28-206ENST00000595974 HOXA9P31269 272 aa17.56■□□□□ 0.4
TRIM28-206ENST00000595974 NDUFA8P51970 172 aa17.56■□□□□ 0.4
TRIM28-206ENST00000595974 MRPL58Q14197 206 aaKnown RBP17.56■□□□□ 0.4
TRIM28-206ENST00000595974 ZNF280DQ6N043 979 aa17.56■□□□□ 0.4
TRIM28-206ENST00000595974 EFCAB13Q8IY85 973 aa17.56■□□□□ 0.4
TRIM28-206ENST00000595974 GPD1LQ8N335 351 aa17.56■□□□□ 0.4
TRIM28-206ENST00000595974 FSIP1Q8NA03 581 aa17.56■□□□□ 0.4
TRIM28-206ENST00000595974 TDRD5Q8NAT2 981 aaKnown RBP17.56■□□□□ 0.4
TRIM28-206ENST00000595974 SMG7Q92540 1137 aaKnown RBP17.56■□□□□ 0.4
TRIM28-206ENST00000595974 ZNF707Q96C28 371 aaPredicted RBP17.56■□□□□ 0.4
TRIM28-206ENST00000595974 PAGE5Q96GU1 130 aa17.56■□□□□ 0.4
TRIM28-206ENST00000595974 EPHX3Q9H6B9 360 aa17.56■□□□□ 0.4
TRIM28-206ENST00000595974 TSHZ2Q9NRE2 1034 aa17.56■□□□□ 0.4
TRIM28-206ENST00000595974 EXOC1Q9NV70 894 aa17.56■□□□□ 0.4
TRIM28-206ENST00000595974 RBAKQ9NYW8 714 aaPredicted RBP17.56■□□□□ 0.4
TRIM28-206ENST00000595974 ANO9A1A5B4 782 aa17.55■□□□□ 0.4
TRIM28-206ENST00000595974 KLRC4O43908 158 aa17.55■□□□□ 0.4
TRIM28-206ENST00000595974 TBC1D4O60343 1298 aa17.55■□□□□ 0.4
TRIM28-206ENST00000595974 C8AP07357 584 aa17.55■□□□□ 0.4
TRIM28-206ENST00000595974 HNRNPA1P09651 372 aaKnown RBP eCLIP17.55■□□□□ 0.4
TRIM28-206ENST00000595974 SP100P23497 879 aaPredicted RBP17.55■□□□□ 0.4
TRIM28-206ENST00000595974 HOXD13P35453 343 aa17.55■□□□□ 0.4
TRIM28-206ENST00000595974 SNRPFP62306 86 aaKnown RBP17.55■□□□□ 0.4
TRIM28-206ENST00000595974 ROR1Q01973 937 aa17.55■□□□□ 0.4
TRIM28-206ENST00000595974 BMT2Q1RMZ1 405 aa17.55■□□□□ 0.4
TRIM28-206ENST00000595974 C9orf57Q5W0N0 161 aa17.55■□□□□ 0.4
TRIM28-206ENST00000595974 RSPO2Q6UXX9 243 aaPredicted RBP17.55■□□□□ 0.4
TRIM28-206ENST00000595974 RTL10Q7L3V2 364 aa17.55■□□□□ 0.4
TRIM28-206ENST00000595974 TMEM130Q8N3G9 435 aa17.55■□□□□ 0.4
TRIM28-206ENST00000595974 ZSWIM2Q8NEG5 633 aa17.55■□□□□ 0.4
TRIM28-206ENST00000595974 FEZF2Q8TBJ5 459 aa17.55■□□□□ 0.4
TRIM28-206ENST00000595974 SCFD1Q8WVM8 642 aa17.55■□□□□ 0.4
TRIM28-206ENST00000595974 OXCT2Q9BYC2 517 aaPredicted RBP17.55■□□□□ 0.4
TRIM28-206ENST00000595974 PRKD2Q9BZL6 878 aa17.55■□□□□ 0.4
TRIM28-206ENST00000595974 PCIF1Q9H4Z3 704 aa17.55■□□□□ 0.4
TRIM28-206ENST00000595974 GDPD2Q9HCC8 539 aa17.55■□□□□ 0.4
TRIM28-206ENST00000595974 MUTYHQ9UIF7 546 aa17.55■□□□□ 0.4
TRIM28-206ENST00000595974 TRIOO75962 3097 aa17.55■□□□□ 0.4
TRIM28-206ENST00000595974 TECTAO75443 2155 aa17.55■□□□□ 0.4
TRIM28-206ENST00000595974 CLUHO75153 1309 aa17.54■□□□□ 0.4
TRIM28-206ENST00000595974 ARHGEF37A1IGU5 675 aa17.54■□□□□ 0.4
TRIM28-206ENST00000595974 GOLGA8IPA6NC78 632 aa17.54■□□□□ 0.4
TRIM28-206ENST00000595974 GOLGA8JA6NMD2 632 aa17.54■□□□□ 0.4
TRIM28-206ENST00000595974 C2CD4DB7Z1M9 353 aa17.54■□□□□ 0.4
TRIM28-206ENST00000595974 PIRO00625 290 aa17.54■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms