RNA–Protein interactions for RNA: ENST00000590096.1

ATG4D-212, Transcript of autophagy related 4D cysteine peptidase, humanhuman

TSL 5

Gene ATG4D, Length 1,282 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4D-212ENST00000590096 LMBRD2Q68DH5 695 aaPredicted RBP23.03■■□□□ 1.28
ATG4D-212ENST00000590096 EP400NLQ6ZTU2 488 aa23.03■■□□□ 1.28
ATG4D-212ENST00000590096 WDR49Q8IV35 697 aa23.03■■□□□ 1.28
ATG4D-212ENST00000590096 GPR65Q8IYL9 337 aa23.03■■□□□ 1.28
ATG4D-212ENST00000590096 RIN2Q8WYP3 895 aaPredicted RBP23.03■■□□□ 1.28
ATG4D-212ENST00000590096 CCDC127Q96BQ5 260 aa23.03■■□□□ 1.28
ATG4D-212ENST00000590096 DHTKD1Q96HY7 919 aaPredicted RBP23.03■■□□□ 1.28
ATG4D-212ENST00000590096 B3GALT6Q96L58 329 aa23.03■■□□□ 1.28
ATG4D-212ENST00000590096 CGRRF1Q99675 332 aa23.03■■□□□ 1.28
ATG4D-212ENST00000590096 INTS13Q9NVM9 706 aa23.03■■□□□ 1.28
ATG4D-212ENST00000590096 R3HCC1Q9Y3T6 440 aaKnown RBP23.03■■□□□ 1.28
ATG4D-212ENST00000590096 I3L4J1 428 aa23.02■■□□□ 1.28
ATG4D-212ENST00000590096 PIRO00625 290 aa23.02■■□□□ 1.28
ATG4D-212ENST00000590096 BMP6P22004 513 aa23.02■■□□□ 1.28
ATG4D-212ENST00000590096 PAX3P23760 479 aa23.02■■□□□ 1.28
ATG4D-212ENST00000590096 CCNE1P24864 410 aa23.02■■□□□ 1.28
ATG4D-212ENST00000590096 GTF2F1P35269 517 aaKnown RBP eCLIP23.02■■□□□ 1.28
ATG4D-212ENST00000590096 CASP4P49662 377 aa23.02■■□□□ 1.28
ATG4D-212ENST00000590096 CREMQ03060 361 aa23.02■■□□□ 1.28
ATG4D-212ENST00000590096 LRRC63Q05C16 580 aa23.02■■□□□ 1.28
ATG4D-212ENST00000590096 DUOXA2Q1HG44 320 aa23.02■■□□□ 1.28
ATG4D-212ENST00000590096 RTP2Q5QGT7 225 aa23.02■■□□□ 1.28
ATG4D-212ENST00000590096 KLHL10Q6JEL2 608 aa23.02■■□□□ 1.28
ATG4D-212ENST00000590096 PDXDC1Q6P996 788 aa23.02■■□□□ 1.28
ATG4D-212ENST00000590096 PHF6Q8IWS0 365 aaKnown RBP eCLIP23.02■■□□□ 1.28
ATG4D-212ENST00000590096 MTMR12Q9C0I1 747 aa23.02■■□□□ 1.28
ATG4D-212ENST00000590096 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP23.02■■□□□ 1.28
ATG4D-212ENST00000590096 CLDND1Q9NY35 253 aa23.02■■□□□ 1.28
ATG4D-212ENST00000590096 ITGA11Q9UKX5 1188 aa23.02■■□□□ 1.28
ATG4D-212ENST00000590096 ANO9A1A5B4 782 aa23.01■■□□□ 1.27
ATG4D-212ENST00000590096 SYN3O14994 580 aa23.01■■□□□ 1.27
ATG4D-212ENST00000590096 CETN3O15182 167 aa23.01■■□□□ 1.27
ATG4D-212ENST00000590096 MAPK13O15264 365 aa23.01■■□□□ 1.27
ATG4D-212ENST00000590096 LILRB3O75022 631 aa23.01■■□□□ 1.27
ATG4D-212ENST00000590096 CD44P16070 742 aaKnown RBP23.01■■□□□ 1.27
ATG4D-212ENST00000590096 FGFR3P22607 806 aa23.01■■□□□ 1.27
ATG4D-212ENST00000590096 USP37Q86T82 979 aa23.01■■□□□ 1.27
ATG4D-212ENST00000590096 EFHBQ8N7U6 833 aa23.01■■□□□ 1.27
ATG4D-212ENST00000590096 HLA-CQ95604 372 aa23.01■■□□□ 1.27
ATG4D-212ENST00000590096 PABPC5Q96DU9 382 aaKnown RBP23.01■■□□□ 1.27
ATG4D-212ENST00000590096 SUSD3Q96L08 255 aa23.01■■□□□ 1.27
ATG4D-212ENST00000590096 ZNF560Q96MR9 790 aa23.01■■□□□ 1.27
ATG4D-212ENST00000590096 COG5Q9UP83 839 aa23.01■■□□□ 1.27
ATG4D-212ENST00000590096 PPP1R3GB7ZBB8 358 aa23■■□□□ 1.27
ATG4D-212ENST00000590096 PPEF2O14830 753 aa23■■□□□ 1.27
ATG4D-212ENST00000590096 ITGB3P05106 788 aa23■■□□□ 1.27
ATG4D-212ENST00000590096 KRT19P08727 400 aa23■■□□□ 1.27
ATG4D-212ENST00000590096 SRGAP2BP0DMP2 458 aa23■■□□□ 1.27
ATG4D-212ENST00000590096 TKTP29401 623 aaKnown RBP23■■□□□ 1.27
ATG4D-212ENST00000590096 POLR2BP30876 1174 aaKnown RBP23■■□□□ 1.27
ATG4D-212ENST00000590096 PSMC2P35998 433 aaKnown RBP23■■□□□ 1.27
ATG4D-212ENST00000590096 TAF6P49848 677 aa23■■□□□ 1.27
ATG4D-212ENST00000590096 PSMD5Q16401 504 aa23■■□□□ 1.27
ATG4D-212ENST00000590096 ANKRD40Q6AI12 368 aa23■■□□□ 1.27
ATG4D-212ENST00000590096 DSTYKQ6XUX3 929 aa23■■□□□ 1.27
ATG4D-212ENST00000590096 PPFIBP1Q86W92 1011 aa23■■□□□ 1.27
ATG4D-212ENST00000590096 FAM186BQ8IYM0 893 aa23■■□□□ 1.27
ATG4D-212ENST00000590096 CSGALNACT2Q8N6G5 542 aa23■■□□□ 1.27
ATG4D-212ENST00000590096 C1orf127Q8N9H9 656 aa23■■□□□ 1.27
ATG4D-212ENST00000590096 OR5B17Q8NGF7 314 aa23■■□□□ 1.27
ATG4D-212ENST00000590096 PIK3R5Q8WYR1 880 aa23■■□□□ 1.27
ATG4D-212ENST00000590096 KLHL5Q96PQ7 755 aa23■■□□□ 1.27
ATG4D-212ENST00000590096 COL25A1Q9BXS0 654 aaPredicted RBP23■■□□□ 1.27
ATG4D-212ENST00000590096 RXFP1Q9HBX9 757 aa23■■□□□ 1.27
ATG4D-212ENST00000590096 AGAP1Q9UPQ3 857 aa23■■□□□ 1.27
ATG4D-212ENST00000590096 CTNND2Q9UQB3 1225 aa23■■□□□ 1.27
ATG4D-212ENST00000590096 PTPRJQ12913 1337 aa23■■□□□ 1.27
ATG4D-212ENST00000590096 VWA8A3KMH1 1905 aa23■■□□□ 1.27
ATG4D-212ENST00000590096 BICDL2A1A5D9 508 aa22.99■■□□□ 1.27
ATG4D-212ENST00000590096 TRIM49BA6NDI0 452 aa22.99■■□□□ 1.27
ATG4D-212ENST00000590096 CLASP2O75122 1294 aaKnown RBP22.99■■□□□ 1.27
ATG4D-212ENST00000590096 ADH1AP07327 375 aa22.99■■□□□ 1.27
ATG4D-212ENST00000590096 CNPP09543 421 aaKnown RBP22.99■■□□□ 1.27
ATG4D-212ENST00000590096 KRT13P13646 458 aa22.99■■□□□ 1.27
ATG4D-212ENST00000590096 KLRC2P26717 231 aa22.99■■□□□ 1.27
ATG4D-212ENST00000590096 PNPLA4P41247 253 aa22.99■■□□□ 1.27
ATG4D-212ENST00000590096 LILRA4P59901 499 aa22.99■■□□□ 1.27
ATG4D-212ENST00000590096 RBP5P82980 135 aa22.99■■□□□ 1.27
ATG4D-212ENST00000590096 FKBP3Q00688 224 aaKnown RBP22.99■■□□□ 1.27
ATG4D-212ENST00000590096 PRSS55Q6UWB4 352 aaPredicted RBP22.99■■□□□ 1.27
ATG4D-212ENST00000590096 ANKS3Q6ZW76 656 aa22.99■■□□□ 1.27
ATG4D-212ENST00000590096 INTS8Q75QN2 995 aaKnown RBP22.99■■□□□ 1.27
ATG4D-212ENST00000590096 APPL2Q8NEU8 664 aa22.99■■□□□ 1.27
ATG4D-212ENST00000590096 PARD3BQ8TEW8 1205 aa22.99■■□□□ 1.27
ATG4D-212ENST00000590096 NELFBQ8WX92 580 aa22.99■■□□□ 1.27
ATG4D-212ENST00000590096 FAM84AQ96KN4 292 aa22.99■■□□□ 1.27
ATG4D-212ENST00000590096 POP1Q99575 1024 aaKnown RBP22.99■■□□□ 1.27
ATG4D-212ENST00000590096 UBE2ZQ9H832 354 aaPredicted RBP22.99■■□□□ 1.27
ATG4D-212ENST00000590096 FNIP2Q9P278 1114 aa22.99■■□□□ 1.27
ATG4D-212ENST00000590096 THEGQ9P2T0 379 aa22.99■■□□□ 1.27
ATG4D-212ENST00000590096 PCDHB8Q9UN66 801 aa22.99■■□□□ 1.27
ATG4D-212ENST00000590096 ARHGEF37A1IGU5 675 aa22.98■■□□□ 1.27
ATG4D-212ENST00000590096 LINC01565O15544 149 aa22.98■■□□□ 1.27
ATG4D-212ENST00000590096 AKAP3O75969 853 aa22.98■■□□□ 1.27
ATG4D-212ENST00000590096 EPB41P11171 864 aaKnown RBP22.98■■□□□ 1.27
ATG4D-212ENST00000590096 AARSP49588 968 aaKnown RBP eCLIP22.98■■□□□ 1.27
ATG4D-212ENST00000590096 NDUFV1P49821 464 aa22.98■■□□□ 1.27
ATG4D-212ENST00000590096 AP3M2P53677 418 aa22.98■■□□□ 1.27
ATG4D-212ENST00000590096 PMS1P54277 932 aaKnown RBP22.98■■□□□ 1.27
ATG4D-212ENST00000590096 PAK1Q13153 545 aa22.98■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms