RNA–Protein interactions for RNA: ENST00000586058.1

LIG3-206, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 581 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-206ENST00000586058 EDN1P05305 212 aa6.64□□□□□ -1.35
LIG3-206ENST00000586058 ITGA4P13612 1032 aa6.64□□□□□ -1.35
LIG3-206ENST00000586058 FGFR4P22455 802 aa6.64□□□□□ -1.35
LIG3-206ENST00000586058 CASQ1P31415 396 aa6.64□□□□□ -1.35
LIG3-206ENST00000586058 EIF4A3P38919 411 aaKnown RBP6.64□□□□□ -1.35
LIG3-206ENST00000586058 PRKCIP41743 596 aa6.64□□□□□ -1.35
LIG3-206ENST00000586058 MAGEA1P43355 309 aa6.64□□□□□ -1.35
LIG3-206ENST00000586058 RBP5P82980 135 aa6.64□□□□□ -1.35
LIG3-206ENST00000586058 ZNF200P98182 395 aaPredicted RBP6.64□□□□□ -1.35
LIG3-206ENST00000586058 CUL2Q13617 745 aa6.64□□□□□ -1.35
LIG3-206ENST00000586058 AMHR2Q16671 573 aa6.64□□□□□ -1.35
LIG3-206ENST00000586058 SV2CQ496J9 727 aa6.64□□□□□ -1.35
LIG3-206ENST00000586058 E4F1Q66K89 784 aaPredicted RBP6.64□□□□□ -1.35
LIG3-206ENST00000586058 JADE1Q6IE81 842 aa6.64□□□□□ -1.35
LIG3-206ENST00000586058 CCSAPQ6IQ19 270 aaPredicted RBP6.64□□□□□ -1.35
LIG3-206ENST00000586058 RAD9BQ6WBX8 426 aa6.64□□□□□ -1.35
LIG3-206ENST00000586058 C15orf39Q6ZRI6 1047 aa6.64□□□□□ -1.35
LIG3-206ENST00000586058 TRAPPC11Q7Z392 1133 aa6.64□□□□□ -1.35
LIG3-206ENST00000586058 ZNF677Q86XU0 584 aa6.64□□□□□ -1.35
LIG3-206ENST00000586058 CEP120Q8N960 986 aa6.64□□□□□ -1.35
LIG3-206ENST00000586058 ACRBPQ8NEB7 543 aa6.64□□□□□ -1.35
LIG3-206ENST00000586058 ZSWIM2Q8NEG5 633 aa6.64□□□□□ -1.35
LIG3-206ENST00000586058 PPP1R13LQ8WUF5 828 aa6.64□□□□□ -1.35
LIG3-206ENST00000586058 CTNNBL1Q8WYA6 563 aaPredicted RBP6.64□□□□□ -1.35
LIG3-206ENST00000586058 SECISBP2LQ93073 1101 aaKnown RBP6.64□□□□□ -1.35
LIG3-206ENST00000586058 TRIM11Q96F44 468 aa6.64□□□□□ -1.35
LIG3-206ENST00000586058 CALR3Q96L12 384 aaKnown RBP6.64□□□□□ -1.35
LIG3-206ENST00000586058 SNX27Q96L92 541 aa6.64□□□□□ -1.35
LIG3-206ENST00000586058 DEFB118Q96PH6 123 aa6.64□□□□□ -1.35
LIG3-206ENST00000586058 POP1Q99575 1024 aaKnown RBP6.64□□□□□ -1.35
LIG3-206ENST00000586058 CHP1Q99653 195 aa6.64□□□□□ -1.35
LIG3-206ENST00000586058 FTHL17Q9BXU8 183 aa6.64□□□□□ -1.35
LIG3-206ENST00000586058 HAPLN2Q9GZV7 340 aa6.64□□□□□ -1.35
LIG3-206ENST00000586058 UNC93B1Q9H1C4 597 aa6.64□□□□□ -1.35
LIG3-206ENST00000586058 SIX2Q9NPC8 291 aa6.64□□□□□ -1.35
LIG3-206ENST00000586058 WBP1LQ9NX94 342 aa6.64□□□□□ -1.35
LIG3-206ENST00000586058 HCSTQ9UBK5 93 aa6.64□□□□□ -1.35
LIG3-206ENST00000586058 USP20Q9Y2K6 914 aa6.64□□□□□ -1.35
LIG3-206ENST00000586058 PAXBP1Q9Y5B6 917 aa6.64□□□□□ -1.35
LIG3-206ENST00000586058 PCDHB4Q9Y5E5 795 aa6.64□□□□□ -1.35
LIG3-206ENST00000586058 ADGRG1Q9Y653 693 aa6.64□□□□□ -1.35
LIG3-206ENST00000586058 UMODL1Q5DID0 1318 aa6.64□□□□□ -1.35
LIG3-206ENST00000586058 SRCAPQ6ZRS2 3230 aa6.64□□□□□ -1.35
LIG3-206ENST00000586058 PATJQ8NI35 1801 aa6.64□□□□□ -1.35
LIG3-206ENST00000586058 NLRC5Q86WI3 1866 aa6.64□□□□□ -1.35
LIG3-206ENST00000586058 LACTBL1A8MY62 500 aa6.63□□□□□ -1.35
LIG3-206ENST00000586058 ABLIM1O14639 778 aa6.63□□□□□ -1.35
LIG3-206ENST00000586058 FAM189A1O60320 539 aa6.63□□□□□ -1.35
LIG3-206ENST00000586058 ASS1P00966 412 aaKnown RBP6.63□□□□□ -1.35
LIG3-206ENST00000586058 MYCP01106 439 aaPredicted RBP6.63□□□□□ -1.35
LIG3-206ENST00000586058 NFICP08651 508 aa6.63□□□□□ -1.35
LIG3-206ENST00000586058 IQCF3P0C7M6 154 aa6.63□□□□□ -1.35
LIG3-206ENST00000586058 GHRP10912 638 aa6.63□□□□□ -1.35
LIG3-206ENST00000586058 SELPP16109 830 aa6.63□□□□□ -1.35
LIG3-206ENST00000586058 DESP17661 470 aa6.63□□□□□ -1.35
LIG3-206ENST00000586058 GNA15P30679 374 aa6.63□□□□□ -1.35
LIG3-206ENST00000586058 CTCFP49711 727 aaPredicted RBP6.63□□□□□ -1.35
LIG3-206ENST00000586058 MCCD1P59942 119 aaPredicted RBP6.63□□□□□ -1.35
LIG3-206ENST00000586058 GNG11P61952 73 aa6.63□□□□□ -1.35
LIG3-206ENST00000586058 GFPT1Q06210 699 aaPredicted RBP6.63□□□□□ -1.35
LIG3-206ENST00000586058 MTF1Q14872 753 aa6.63□□□□□ -1.35
LIG3-206ENST00000586058 FBXO47Q5MNV8 452 aa6.63□□□□□ -1.35
LIG3-206ENST00000586058 ZBTB41Q5SVQ8 909 aa6.63□□□□□ -1.35
LIG3-206ENST00000586058 PHLDB3Q6NSJ2 640 aa6.63□□□□□ -1.35
LIG3-206ENST00000586058 GJB7Q6PEY0 223 aa6.63□□□□□ -1.35
LIG3-206ENST00000586058 WDR59Q6PJI9 974 aa6.63□□□□□ -1.35
LIG3-206ENST00000586058 SCARA5Q6ZMJ2 495 aa6.63□□□□□ -1.35
LIG3-206ENST00000586058 TRIM72Q6ZMU5 477 aa6.63□□□□□ -1.35
LIG3-206ENST00000586058 LRRC8DQ7L1W4 858 aa6.63□□□□□ -1.35
LIG3-206ENST00000586058 FAM228AQ86W67 206 aa6.63□□□□□ -1.35
LIG3-206ENST00000586058 ARHGEF19Q8IW93 802 aa6.63□□□□□ -1.35
LIG3-206ENST00000586058 C17orf53Q8N3J3 647 aaPredicted RBP6.63□□□□□ -1.35
LIG3-206ENST00000586058 ANKLE1Q8NAG6 615 aa6.63□□□□□ -1.35
LIG3-206ENST00000586058 TRIM58Q8NG06 486 aa6.63□□□□□ -1.35
LIG3-206ENST00000586058 URGCPQ8TCY9 931 aa6.63□□□□□ -1.35
LIG3-206ENST00000586058 PLEKHO2Q8TD55 490 aa6.63□□□□□ -1.35
LIG3-206ENST00000586058 SHC3Q92529 594 aa6.63□□□□□ -1.35
LIG3-206ENST00000586058 APBB2Q92870 758 aa6.63□□□□□ -1.35
LIG3-206ENST00000586058 NOX5Q96PH1 765 aa6.63□□□□□ -1.35
LIG3-206ENST00000586058 KCNK17Q96T54 332 aa6.63□□□□□ -1.35
LIG3-206ENST00000586058 PI4K2AQ9BTU6 479 aa6.63□□□□□ -1.35
LIG3-206ENST00000586058 KIAA1671Q9BY89 1806 aa6.63□□□□□ -1.35
LIG3-206ENST00000586058 NXF3Q9H4D5 531 aaKnown RBP6.63□□□□□ -1.35
LIG3-206ENST00000586058 PAK6Q9NQU5 681 aaPredicted RBP6.63□□□□□ -1.35
LIG3-206ENST00000586058 UTP3Q9NQZ2 479 aaKnown RBP eCLIP6.63□□□□□ -1.358e-8■■■■■ 44.9
LIG3-206ENST00000586058 TRMT13Q9NUP7 481 aaKnown RBP6.63□□□□□ -1.35
LIG3-206ENST00000586058 FAM105AQ9NUU6 356 aa6.63□□□□□ -1.35
LIG3-206ENST00000586058 DPP3Q9NY33 737 aa6.63□□□□□ -1.35
LIG3-206ENST00000586058 SNTG2Q9NY99 539 aa6.63□□□□□ -1.35
LIG3-206ENST00000586058 CNTN3Q9P232 1028 aa6.63□□□□□ -1.35
LIG3-206ENST00000586058 ARHGAP20Q9P2F6 1191 aa6.63□□□□□ -1.35
LIG3-206ENST00000586058 PUF60Q9UHX1 559 aaKnown RBP6.63□□□□□ -1.35
LIG3-206ENST00000586058 INTUQ9ULD6 942 aa6.63□□□□□ -1.35
LIG3-206ENST00000586058 GUCA1BQ9UMX6 200 aa6.63□□□□□ -1.35
LIG3-206ENST00000586058 ST3GAL5Q9UNP4 418 aa6.63□□□□□ -1.35
LIG3-206ENST00000586058 NOC2LQ9Y3T9 749 aaKnown RBP6.63□□□□□ -1.35
LIG3-206ENST00000586058 IPPQ9Y573 584 aa6.63□□□□□ -1.35
LIG3-206ENST00000586058 PCDHB2Q9Y5E7 798 aa6.63□□□□□ -1.35
LIG3-206ENST00000586058 PCDHA13Q9Y5I0 950 aa6.63□□□□□ -1.35
LIG3-206ENST00000586058 PTPRJQ12913 1337 aa6.62□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms