RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 ANAPC1Q9H1A4 1944 aa7.36□□□□□ -1.23
VPS53-213ENST00000572334 TPRP12270 2363 aaKnown RBP7.35□□□□□ -1.23
VPS53-213ENST00000572334 MYO16Q9Y6X6 1858 aa7.35□□□□□ -1.23
VPS53-213ENST00000572334 KANSL1LA0AUZ9 987 aa7.35□□□□□ -1.23
VPS53-213ENST00000572334 TTC26A0AVF1 554 aa7.35□□□□□ -1.23
VPS53-213ENST00000572334 STK25O00506 426 aa7.35□□□□□ -1.23
VPS53-213ENST00000572334 LAD1O00515 517 aa7.35□□□□□ -1.23
VPS53-213ENST00000572334 SYN3O14994 580 aa7.35□□□□□ -1.23
VPS53-213ENST00000572334 XYLBO75191 536 aa7.35□□□□□ -1.23
VPS53-213ENST00000572334 ECI2O75521 394 aa7.35□□□□□ -1.23
VPS53-213ENST00000572334 TOM1L1O75674 476 aa7.35□□□□□ -1.23
VPS53-213ENST00000572334 ADRB2P07550 413 aa7.35□□□□□ -1.23
VPS53-213ENST00000572334 PLS3P13797 630 aa7.35□□□□□ -1.23
VPS53-213ENST00000572334 ATF2P15336 505 aa7.35□□□□□ -1.23
VPS53-213ENST00000572334 RPL9P32969 192 aaKnown RBP7.35□□□□□ -1.23
VPS53-213ENST00000572334 TNFSF9P41273 254 aa7.35□□□□□ -1.23
VPS53-213ENST00000572334 AARSP49588 968 aaKnown RBP eCLIP7.35□□□□□ -1.23
VPS53-213ENST00000572334 GRIN1Q05586 938 aa7.35□□□□□ -1.23
VPS53-213ENST00000572334 SPAG1Q07617 926 aa7.35□□□□□ -1.23
VPS53-213ENST00000572334 MCL1Q07820 350 aa7.35□□□□□ -1.23
VPS53-213ENST00000572334 RAD51AP2Q09MP3 1159 aa7.35□□□□□ -1.23
VPS53-213ENST00000572334 DMP1Q13316 513 aaPredicted RBP7.35□□□□□ -1.23
VPS53-213ENST00000572334 ZBTB6Q15916 424 aa7.35□□□□□ -1.23
VPS53-213ENST00000572334 ZBTB41Q5SVQ8 909 aa7.35□□□□□ -1.23
VPS53-213ENST00000572334 KRT79Q5XKE5 535 aa7.35□□□□□ -1.23
VPS53-213ENST00000572334 DTHD1Q6ZMT9 781 aa7.35□□□□□ -1.23
VPS53-213ENST00000572334 MTSS1LQ765P7 747 aa7.35□□□□□ -1.23
VPS53-213ENST00000572334 HS6ST3Q8IZP7 471 aa7.35□□□□□ -1.23
VPS53-213ENST00000572334 FAM184AQ8NB25 1140 aa7.35□□□□□ -1.23
VPS53-213ENST00000572334 BEST2Q8NFU1 509 aa7.35□□□□□ -1.23
VPS53-213ENST00000572334 NELL1Q92832 810 aa7.35□□□□□ -1.23
VPS53-213ENST00000572334 CLDN23Q96B33 292 aa7.35□□□□□ -1.23
VPS53-213ENST00000572334 MCRS1Q96EZ8 462 aa7.35□□□□□ -1.23
VPS53-213ENST00000572334 DRC1Q96MC2 740 aa7.35□□□□□ -1.23
VPS53-213ENST00000572334 ZSWIM3Q96MP5 696 aa7.35□□□□□ -1.23
VPS53-213ENST00000572334 FIZ1Q96SL8 496 aa7.35□□□□□ -1.23
VPS53-213ENST00000572334 PLIN2Q99541 437 aa7.35□□□□□ -1.23
VPS53-213ENST00000572334 LRRC3Q9BY71 257 aa7.35□□□□□ -1.23
VPS53-213ENST00000572334 CRISPLD1Q9H336 500 aa7.35□□□□□ -1.23
VPS53-213ENST00000572334 C17orf75Q9HAS0 396 aa7.35□□□□□ -1.23
VPS53-213ENST00000572334 LTB4R2Q9NPC1 389 aa7.35□□□□□ -1.23
VPS53-213ENST00000572334 PLSCR2Q9NRY7 297 aa7.35□□□□□ -1.23
VPS53-213ENST00000572334 BLOC1S4Q9NUP1 217 aa7.35□□□□□ -1.23
VPS53-213ENST00000572334 CEP72Q9P209 647 aa7.35□□□□□ -1.23
VPS53-213ENST00000572334 FBXL5Q9UKA1 691 aa7.35□□□□□ -1.23
VPS53-213ENST00000572334 STK24Q9Y6E0 443 aa7.35□□□□□ -1.23
VPS53-213ENST00000572334 M0QZQ0 153 aa7.34□□□□□ -1.23
VPS53-213ENST00000572334 PPEF2O14830 753 aa7.34□□□□□ -1.23
VPS53-213ENST00000572334 TRAPPC3O43617 180 aa7.34□□□□□ -1.23
VPS53-213ENST00000572334 LMNAP02545 664 aaKnown RBP7.34□□□□□ -1.23
VPS53-213ENST00000572334 CXCL8P10145 99 aa7.34□□□□□ -1.23
VPS53-213ENST00000572334 HARSP12081 509 aaKnown RBP7.34□□□□□ -1.23
VPS53-213ENST00000572334 PTPN2P17706 415 aa7.34□□□□□ -1.23
VPS53-213ENST00000572334 TARSP26639 723 aaKnown RBP7.34□□□□□ -1.23
VPS53-213ENST00000572334 LRPAP1P30533 357 aa7.34□□□□□ -1.23
VPS53-213ENST00000572334 GUCY2FP51841 1108 aa7.34□□□□□ -1.23
VPS53-213ENST00000572334 YARSP54577 528 aaKnown RBP7.34□□□□□ -1.23
VPS53-213ENST00000572334 EPHA5P54756 1037 aa7.34□□□□□ -1.23
VPS53-213ENST00000572334 NCKAP1LP55160 1127 aa7.34□□□□□ -1.23
VPS53-213ENST00000572334 PRKCQQ04759 706 aa7.34□□□□□ -1.23
VPS53-213ENST00000572334 GNL2Q13823 731 aaKnown RBP7.34□□□□□ -1.23
VPS53-213ENST00000572334 NOLC1Q14978 699 aaKnown RBP eCLIP7.34□□□□□ -1.23
VPS53-213ENST00000572334 WDR44Q5JSH3 913 aa7.34□□□□□ -1.23
VPS53-213ENST00000572334 FAM78AQ5JUQ0 283 aa7.34□□□□□ -1.23
VPS53-213ENST00000572334 SLC39A4Q6P5W5 647 aa7.34□□□□□ -1.23
VPS53-213ENST00000572334 ZPBP2Q6X784 338 aa7.34□□□□□ -1.23
VPS53-213ENST00000572334 DDX12PQ92771 950 aa7.34□□□□□ -1.23
VPS53-213ENST00000572334 ELSPBP1Q96BH3 223 aa7.34□□□□□ -1.23
VPS53-213ENST00000572334 RSPRY1Q96DX4 576 aa7.34□□□□□ -1.23
VPS53-213ENST00000572334 TMX3Q96JJ7 454 aa7.34□□□□□ -1.23
VPS53-213ENST00000572334 TBC1D32Q96NH3 1257 aa7.34□□□□□ -1.23
VPS53-213ENST00000572334 TIPINQ9BVW5 301 aa7.34□□□□□ -1.23
VPS53-213ENST00000572334 OSBPL6Q9BZF3 934 aa7.34□□□□□ -1.23
VPS53-213ENST00000572334 RAB34Q9BZG1 259 aa7.34□□□□□ -1.23
VPS53-213ENST00000572334 DNAJC25Q9H1X3 360 aa7.34□□□□□ -1.23
VPS53-213ENST00000572334 CYP4F11Q9HBI6 524 aa7.34□□□□□ -1.23
VPS53-213ENST00000572334 HEBP1Q9NRV9 189 aa7.34□□□□□ -1.23
VPS53-213ENST00000572334 TOPORSQ9NS56 1045 aaPredicted RBP7.34□□□□□ -1.23
VPS53-213ENST00000572334 SLC38A7Q9NVC3 462 aa7.34□□□□□ -1.23
VPS53-213ENST00000572334 GDE1Q9NZC3 331 aa7.34□□□□□ -1.23
VPS53-213ENST00000572334 ANKFY1Q9P2R3 1169 aa7.34□□□□□ -1.23
VPS53-213ENST00000572334 MRPS23Q9Y3D9 190 aaKnown RBP7.34□□□□□ -1.23
VPS53-213ENST00000572334 INSL5Q9Y5Q6 135 aa7.34□□□□□ -1.23
VPS53-213ENST00000572334 PTPRDP23468 1912 aa7.34□□□□□ -1.23
VPS53-213ENST00000572334 CNOT1A5YKK6 2376 aaKnown RBP7.34□□□□□ -1.23
VPS53-213ENST00000572334 KIAA1549LQ6ZVL6 1849 aa7.34□□□□□ -1.24
VPS53-213ENST00000572334 VWA3AA6NCI4 1184 aa7.33□□□□□ -1.24
VPS53-213ENST00000572334 FAM170BA6NMN3 283 aa7.33□□□□□ -1.24
VPS53-213ENST00000572334 LACTBL1A8MY62 500 aa7.33□□□□□ -1.24
VPS53-213ENST00000572334 ARNTLO00327 626 aa7.33□□□□□ -1.24
VPS53-213ENST00000572334 SPTLC1O15269 473 aa7.33□□□□□ -1.24
VPS53-213ENST00000572334 LILRB5O75023 590 aa7.33□□□□□ -1.24
VPS53-213ENST00000572334 MICAL2O94851 1124 aa7.33□□□□□ -1.24
VPS53-213ENST00000572334 OAZ2O95190 189 aa7.33□□□□□ -1.24
VPS53-213ENST00000572334 PIGRP01833 764 aa7.33□□□□□ -1.24
VPS53-213ENST00000572334 OR4Q2P0C623 313 aa7.33□□□□□ -1.24
VPS53-213ENST00000572334 PLA2G4BP0C869 781 aa7.33□□□□□ -1.24
VPS53-213ENST00000572334 TDGF1P13385 188 aa7.33□□□□□ -1.24
VPS53-213ENST00000572334 GJA1P17302 382 aa7.33□□□□□ -1.24
VPS53-213ENST00000572334 GJB2P29033 226 aa7.33□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms