RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 PHEXP78562 749 aa3.59□□□□□ -1.83
VPS35-208ENST00000568612 OCRLQ01968 901 aa3.59□□□□□ -1.83
VPS35-208ENST00000568612 DSG1Q02413 1049 aa3.59□□□□□ -1.83
VPS35-208ENST00000568612 CUL4BQ13620 913 aa3.59□□□□□ -1.83
VPS35-208ENST00000568612 PUM1Q14671 1186 aaKnown RBP eCLIP3.59□□□□□ -1.83
VPS35-208ENST00000568612 EPHA7Q15375 998 aa3.59□□□□□ -1.83
VPS35-208ENST00000568612 ELF2Q15723 593 aa3.59□□□□□ -1.83
VPS35-208ENST00000568612 DGKDQ16760 1214 aa3.59□□□□□ -1.83
VPS35-208ENST00000568612 CCDC38Q502W7 563 aa3.59□□□□□ -1.83
VPS35-208ENST00000568612 PLEKHO1Q53GL0 409 aaPredicted RBP3.59□□□□□ -1.83
VPS35-208ENST00000568612 EMC10Q5UCC4 262 aa3.59□□□□□ -1.83
VPS35-208ENST00000568612 CREB3L3Q68CJ9 461 aa3.59□□□□□ -1.83
VPS35-208ENST00000568612 TCTN3Q6NUS6 607 aa3.59□□□□□ -1.83
VPS35-208ENST00000568612 TLDC1Q6P9B6 456 aa3.59□□□□□ -1.83
VPS35-208ENST00000568612 MTHFD1LQ6UB35 978 aa3.59□□□□□ -1.83
VPS35-208ENST00000568612 KRT77Q7Z794 578 aa3.59□□□□□ -1.83
VPS35-208ENST00000568612 KIAA0907Q7Z7F0 614 aaPredicted RBP3.59□□□□□ -1.83
VPS35-208ENST00000568612 C11orf74Q86VG3 221 aa3.59□□□□□ -1.83
VPS35-208ENST00000568612 PHYKPLQ8IUZ5 450 aa3.59□□□□□ -1.83
VPS35-208ENST00000568612 APLFQ8IW19 511 aaPredicted RBP3.59□□□□□ -1.83
VPS35-208ENST00000568612 ZZZ3Q8IYH5 903 aa3.59□□□□□ -1.83
VPS35-208ENST00000568612 CCDC170Q8IYT3 715 aa3.59□□□□□ -1.83
VPS35-208ENST00000568612 OR5AN1Q8NGI8 311 aa3.59□□□□□ -1.83
VPS35-208ENST00000568612 MAGEC3Q8TD91 643 aa3.59□□□□□ -1.83
VPS35-208ENST00000568612 ACMSDQ8TDX5 336 aa3.59□□□□□ -1.83
VPS35-208ENST00000568612 LZICQ8WZA0 190 aa3.59□□□□□ -1.83
VPS35-208ENST00000568612 RBM41Q96IZ5 413 aaKnown RBP3.59□□□□□ -1.83
VPS35-208ENST00000568612 C16orf92Q96LL3 132 aa3.59□□□□□ -1.83
VPS35-208ENST00000568612 UIMC1Q96RL1 719 aa3.59□□□□□ -1.83
VPS35-208ENST00000568612 JPH2Q9BR39 696 aaPredicted RBP3.59□□□□□ -1.83
VPS35-208ENST00000568612 SSBP3Q9BWW4 388 aaPredicted RBP3.59□□□□□ -1.83
VPS35-208ENST00000568612 PARD6BQ9BYG5 372 aa3.59□□□□□ -1.83
VPS35-208ENST00000568612 ARGLU1Q9NWB6 273 aaPredicted RBP3.59□□□□□ -1.83
VPS35-208ENST00000568612 HDAC6Q9UBN7 1215 aa3.59□□□□□ -1.83
VPS35-208ENST00000568612 TUBGCP4Q9UGJ1 667 aa3.59□□□□□ -1.83
VPS35-208ENST00000568612 PCSK1NQ9UHG2 260 aa3.59□□□□□ -1.83
VPS35-208ENST00000568612 DNAI1Q9UI46 699 aa3.59□□□□□ -1.83
VPS35-208ENST00000568612 DENND2AQ9ULE3 1009 aa3.59□□□□□ -1.83
VPS35-208ENST00000568612 ZFR2Q9UPR6 939 aaKnown RBP3.59□□□□□ -1.83
VPS35-208ENST00000568612 TBX22Q9Y458 520 aa3.59□□□□□ -1.83
VPS35-208ENST00000568612 TTLL3Q9Y4R7 772 aa3.59□□□□□ -1.83
VPS35-208ENST00000568612 AATKQ6ZMQ8 1374 aa3.59□□□□□ -1.83
VPS35-208ENST00000568612 SBNO2Q9Y2G9 1366 aa3.59□□□□□ -1.83
VPS35-208ENST00000568612 CLASP1Q7Z460 1538 aa3.59□□□□□ -1.84
VPS35-208ENST00000568612 PLXNC1O60486 1568 aa3.59□□□□□ -1.84
VPS35-208ENST00000568612 E9PCH4 1651 aa3.59□□□□□ -1.84
VPS35-208ENST00000568612 ST20-MTHFSA0A0A6YYL1 179 aa3.58□□□□□ -1.84
VPS35-208ENST00000568612 ERICH2A1L162 156 aa3.58□□□□□ -1.84
VPS35-208ENST00000568612 FAM83GA6ND36 823 aa3.58□□□□□ -1.84
VPS35-208ENST00000568612 GOLGA8AA7E2F4 631 aa3.58□□□□□ -1.84
VPS35-208ENST00000568612 TBKBP1A7MCY6 615 aa3.58□□□□□ -1.84
VPS35-208ENST00000568612 KIF3BO15066 747 aa3.58□□□□□ -1.84
VPS35-208ENST00000568612 NPHP1O15259 732 aa3.58□□□□□ -1.84
VPS35-208ENST00000568612 CYP27B1O15528 508 aa3.58□□□□□ -1.84
VPS35-208ENST00000568612 FOXS1O43638 330 aa3.58□□□□□ -1.84
VPS35-208ENST00000568612 ZEB2O60315 1214 aa3.58□□□□□ -1.84
VPS35-208ENST00000568612 KDM1AO60341 852 aa3.58□□□□□ -1.84
VPS35-208ENST00000568612 ZNF623O75123 536 aa3.58□□□□□ -1.84
VPS35-208ENST00000568612 TBCAO75347 108 aaKnown RBP3.58□□□□□ -1.84
VPS35-208ENST00000568612 H2AFYO75367 372 aaKnown RBP3.58□□□□□ -1.84
VPS35-208ENST00000568612 RNF8O76064 485 aa3.58□□□□□ -1.84
VPS35-208ENST00000568612 PRPF6O94906 941 aaKnown RBP3.58□□□□□ -1.84
VPS35-208ENST00000568612 MBD4O95243 580 aa3.58□□□□□ -1.84
VPS35-208ENST00000568612 ALOX15P16050 662 aaPredicted RBP3.58□□□□□ -1.84
VPS35-208ENST00000568612 ZNF20P17024 532 aa3.58□□□□□ -1.84
VPS35-208ENST00000568612 POU3F2P20265 443 aaPredicted RBP3.58□□□□□ -1.84
VPS35-208ENST00000568612 MCM3P25205 808 aa3.58□□□□□ -1.84
VPS35-208ENST00000568612 STAT3P40763 770 aa3.58□□□□□ -1.84
VPS35-208ENST00000568612 MATR3P43243 847 aaKnown RBP eCLIP3.58□□□□□ -1.84
VPS35-208ENST00000568612 ZNF131P52739 623 aa3.58□□□□□ -1.84
VPS35-208ENST00000568612 BIRC3Q13489 604 aa3.58□□□□□ -1.84
VPS35-208ENST00000568612 CUL3Q13618 768 aa3.58□□□□□ -1.84
VPS35-208ENST00000568612 KCTD2Q14681 263 aa3.58□□□□□ -1.84
VPS35-208ENST00000568612 ACAP1Q15027 740 aa3.58□□□□□ -1.84
VPS35-208ENST00000568612 ARHGEF6Q15052 776 aa3.58□□□□□ -1.84
VPS35-208ENST00000568612 ALDH1L2Q3SY69 923 aa3.58□□□□□ -1.84
VPS35-208ENST00000568612 VPS53Q5VIR6 699 aa3.58□□□□□ -1.84
VPS35-208ENST00000568612 NUGGCQ68CJ6 796 aa3.58□□□□□ -1.84
VPS35-208ENST00000568612 KRT40Q6A162 431 aa3.58□□□□□ -1.84
VPS35-208ENST00000568612 TRIM68Q6AZZ1 485 aa3.58□□□□□ -1.84
VPS35-208ENST00000568612 SDE2Q6IQ49 451 aa3.58□□□□□ -1.84
VPS35-208ENST00000568612 KLHDC10Q6PID8 442 aa3.58□□□□□ -1.84
VPS35-208ENST00000568612 CCDC174Q6PII3 467 aa3.58□□□□□ -1.84
VPS35-208ENST00000568612 KIF18BQ86Y91 864 aa3.58□□□□□ -1.84
VPS35-208ENST00000568612 DRC7Q8IY82 874 aa3.58□□□□□ -1.84
VPS35-208ENST00000568612 THEMISQ8N1K5 641 aaPredicted RBP3.58□□□□□ -1.84
VPS35-208ENST00000568612 C17orf53Q8N3J3 647 aaPredicted RBP3.58□□□□□ -1.84
VPS35-208ENST00000568612 CHCHD4Q8N4Q1 142 aa3.58□□□□□ -1.84
VPS35-208ENST00000568612 TTC9BQ8N6N2 239 aa3.58□□□□□ -1.84
VPS35-208ENST00000568612 EFHBQ8N7U6 833 aa3.58□□□□□ -1.84
VPS35-208ENST00000568612 UBR7Q8N806 425 aa3.58□□□□□ -1.84
VPS35-208ENST00000568612 CEP112Q8N8E3 955 aa3.58□□□□□ -1.84
VPS35-208ENST00000568612 NGDNQ8NEJ9 315 aaKnown RBP3.58□□□□□ -1.84
VPS35-208ENST00000568612 NUP133Q8WUM0 1156 aa3.58□□□□□ -1.84
VPS35-208ENST00000568612 LMBR1Q8WVP7 490 aa3.58□□□□□ -1.84
VPS35-208ENST00000568612 CTNNBL1Q8WYA6 563 aaPredicted RBP3.58□□□□□ -1.84
VPS35-208ENST00000568612 GCDHQ92947 438 aaPredicted RBP3.58□□□□□ -1.84
VPS35-208ENST00000568612 DVL3Q92997 716 aaPredicted RBP3.58□□□□□ -1.84
VPS35-208ENST00000568612 USP7Q93009 1102 aa3.58□□□□□ -1.84
VPS35-208ENST00000568612 CUL5Q93034 780 aa3.58□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms