RNA–Protein interactions for RNA: ENST00000568422.6

CLN3-231, Transcript of CLN3, battenin, human

TSL 5

Gene CLN3, Length 1,168 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN3-231	ENST00000568422	CYP4F11	Q9HBI6	524 aa		18.38	■□□□□ 0.53
CLN3-231	ENST00000568422	AFF4	Q9UHB7	1163 aa	Known RBP	18.38	■□□□□ 0.53
CLN3-231	ENST00000568422	PCDHB8	Q9UN66	801 aa		18.38	■□□□□ 0.53
CLN3-231	ENST00000568422	WDR87	Q6ZQQ6	2873 aa		18.37	■□□□□ 0.53
CLN3-231	ENST00000568422	MEFV	O15553	781 aa	Predicted RBP	18.37	■□□□□ 0.53
CLN3-231	ENST00000568422	BMP15	O95972	392 aa		18.37	■□□□□ 0.53
CLN3-231	ENST00000568422	CYP3A5	P20815	502 aa		18.37	■□□□□ 0.53
CLN3-231	ENST00000568422	ABCD1	P33897	745 aa		18.37	■□□□□ 0.53
CLN3-231	ENST00000568422	MATR3	P43243	847 aa	Known RBP eCLIP	18.37	■□□□□ 0.53
CLN3-231	ENST00000568422	ARPP19	P56211	112 aa		18.37	■□□□□ 0.53
CLN3-231	ENST00000568422	FOXK2	Q01167	660 aa		18.37	■□□□□ 0.53
CLN3-231	ENST00000568422	SLC5A9	Q2M3M2	681 aa		18.37	■□□□□ 0.53
CLN3-231	ENST00000568422	HAUS6	Q7Z4H7	955 aa		18.37	■□□□□ 0.53
CLN3-231	ENST00000568422	LEMD2	Q8NC56	503 aa		18.37	■□□□□ 0.53
CLN3-231	ENST00000568422	ING5	Q8WYH8	240 aa		18.37	■□□□□ 0.53
CLN3-231	ENST00000568422	ELSPBP1	Q96BH3	223 aa		18.37	■□□□□ 0.53
CLN3-231	ENST00000568422	MCRS1	Q96EZ8	462 aa		18.37	■□□□□ 0.53
CLN3-231	ENST00000568422	BICD1	Q96G01	975 aa		18.37	■□□□□ 0.53
CLN3-231	ENST00000568422	CALML4	Q96GE6	196 aa		18.37	■□□□□ 0.53
CLN3-231	ENST00000568422	NELL2	Q99435	816 aa		18.37	■□□□□ 0.53
CLN3-231	ENST00000568422	PLIN2	Q99541	437 aa		18.37	■□□□□ 0.53
CLN3-231	ENST00000568422	BCO2	Q9BYV7	579 aa		18.37	■□□□□ 0.53
CLN3-231	ENST00000568422	FOXQ1	Q9C009	403 aa		18.37	■□□□□ 0.53
CLN3-231	ENST00000568422	UPF2	Q9HAU5	1272 aa	Known RBP	18.37	■□□□□ 0.53
CLN3-231	ENST00000568422	INSL5	Q9Y5Q6	135 aa		18.37	■□□□□ 0.53
CLN3-231	ENST00000568422	PATJ	Q8NI35	1801 aa		18.37	■□□□□ 0.53
CLN3-231	ENST00000568422	SPTBN4	Q9H254	2564 aa		18.37	■□□□□ 0.53
CLN3-231	ENST00000568422	TTC26	A0AVF1	554 aa		18.36	■□□□□ 0.53
CLN3-231	ENST00000568422		M0QZQ0	153 aa		18.36	■□□□□ 0.53
CLN3-231	ENST00000568422	XPOT	O43592	962 aa	Known RBP	18.36	■□□□□ 0.53
CLN3-231	ENST00000568422	LMNA	P02545	664 aa	Known RBP	18.36	■□□□□ 0.53
CLN3-231	ENST00000568422	SP9	P0CG40	484 aa		18.36	■□□□□ 0.53
CLN3-231	ENST00000568422	CXCL8	P10145	99 aa		18.36	■□□□□ 0.53
CLN3-231	ENST00000568422	LRPAP1	P30533	357 aa		18.36	■□□□□ 0.53
CLN3-231	ENST00000568422	UBA7	P41226	1012 aa		18.36	■□□□□ 0.53
CLN3-231	ENST00000568422	SEZ6	Q53EL9	994 aa		18.36	■□□□□ 0.53
CLN3-231	ENST00000568422	ARSH	Q5FYA8	562 aa		18.36	■□□□□ 0.53
CLN3-231	ENST00000568422	PRSS36	Q5K4E3	855 aa		18.36	■□□□□ 0.53
CLN3-231	ENST00000568422	CYP4A22	Q5TCH4	519 aa		18.36	■□□□□ 0.53
CLN3-231	ENST00000568422	IQCE	Q6IPM2	695 aa		18.36	■□□□□ 0.53
CLN3-231	ENST00000568422	KCNG4	Q8TDN1	519 aa		18.36	■□□□□ 0.53
CLN3-231	ENST00000568422	CORO1B	Q9BR76	489 aa		18.36	■□□□□ 0.53
CLN3-231	ENST00000568422	UBQLN1	Q9UMX0	589 aa	Known RBP	18.36	■□□□□ 0.53
CLN3-231	ENST00000568422	ZNF292	O60281	2723 aa		18.36	■□□□□ 0.53
CLN3-231	ENST00000568422	NCAM2	O15394	837 aa		18.35	■□□□□ 0.53
CLN3-231	ENST00000568422	OAZ2	O95190	189 aa		18.35	■□□□□ 0.53
CLN3-231	ENST00000568422	SEC24A	O95486	1093 aa		18.35	■□□□□ 0.53
CLN3-231	ENST00000568422	CENPB	P07199	599 aa	Predicted RBP	18.35	■□□□□ 0.53
CLN3-231	ENST00000568422	GLUL	P15104	373 aa		18.35	■□□□□ 0.53
CLN3-231	ENST00000568422	PAX3	P23760	479 aa		18.35	■□□□□ 0.53
CLN3-231	ENST00000568422	LIG4	P49917	911 aa		18.35	■□□□□ 0.53
CLN3-231	ENST00000568422	YWHAH	Q04917	246 aa	Predicted RBP	18.35	■□□□□ 0.53
CLN3-231	ENST00000568422	PPP2R3A	Q06190	1150 aa		18.35	■□□□□ 0.53
CLN3-231	ENST00000568422	ADCY1	Q08828	1119 aa		18.35	■□□□□ 0.53
CLN3-231	ENST00000568422	ZBTB6	Q15916	424 aa		18.35	■□□□□ 0.53
CLN3-231	ENST00000568422	PDZD4	Q76G19	769 aa	Predicted RBP	18.35	■□□□□ 0.53
CLN3-231	ENST00000568422	ZNF512	Q96ME7	567 aa	Predicted RBP	18.35	■□□□□ 0.53
CLN3-231	ENST00000568422	TUBGCP4	Q9UGJ1	667 aa		18.35	■□□□□ 0.53
CLN3-231	ENST00000568422	SMC3	Q9UQE7	1217 aa		18.35	■□□□□ 0.53
CLN3-231	ENST00000568422	ZSCAN21	Q9Y5A6	473 aa	Predicted RBP	18.35	■□□□□ 0.53
CLN3-231	ENST00000568422	CACNA1I	Q9P0X4	2223 aa		18.35	■□□□□ 0.53
CLN3-231	ENST00000568422	NPHP3-ACAD11	A0A0J9YXS1	232 aa		18.34	■□□□□ 0.53
CLN3-231	ENST00000568422	FAM170B	A6NMN3	283 aa		18.34	■□□□□ 0.53
CLN3-231	ENST00000568422	HNRNPDL	O14979	420 aa	Known RBP	18.34	■□□□□ 0.53
CLN3-231	ENST00000568422	PIGR	P01833	764 aa		18.34	■□□□□ 0.53
CLN3-231	ENST00000568422	CPB1	P15086	417 aa		18.34	■□□□□ 0.53
CLN3-231	ENST00000568422	CEBPB	P17676	345 aa		18.34	■□□□□ 0.53
CLN3-231	ENST00000568422	UBXN2B	Q14CS0	331 aa		18.34	■□□□□ 0.53
CLN3-231	ENST00000568422	ZNF528	Q3MIS6	628 aa		18.34	■□□□□ 0.53
CLN3-231	ENST00000568422	ZBTB41	Q5SVQ8	909 aa		18.34	■□□□□ 0.53
CLN3-231	ENST00000568422	DNASE1L2	Q92874	299 aa		18.34	■□□□□ 0.53
CLN3-231	ENST00000568422	KIF12	Q96FN5	646 aa		18.34	■□□□□ 0.53
CLN3-231	ENST00000568422	REEP2	Q9BRK0	252 aa		18.34	■□□□□ 0.53
CLN3-231	ENST00000568422	HAPLN2	Q9GZV7	340 aa		18.34	■□□□□ 0.53
CLN3-231	ENST00000568422	PARVG	Q9HBI0	331 aa		18.34	■□□□□ 0.53
CLN3-231	ENST00000568422	ZFP14	Q9HCL3	533 aa		18.34	■□□□□ 0.53
CLN3-231	ENST00000568422	LTB4R2	Q9NPC1	389 aa		18.34	■□□□□ 0.53
CLN3-231	ENST00000568422	FBXO4	Q9UKT5	387 aa		18.34	■□□□□ 0.53
CLN3-231	ENST00000568422	TBX20	Q9UMR3	447 aa		18.34	■□□□□ 0.53
CLN3-231	ENST00000568422	MRPS17	Q9Y2R5	130 aa	Known RBP	18.34	■□□□□ 0.53
CLN3-231	ENST00000568422	OGT	O15294	1046 aa		18.33	■□□□□ 0.52
CLN3-231	ENST00000568422	FAM13A	O94988	1023 aa		18.33	■□□□□ 0.52
CLN3-231	ENST00000568422	ADRB2	P07550	413 aa		18.33	■□□□□ 0.52
CLN3-231	ENST00000568422	LONP1	P36776	959 aa	Known RBP	18.33	■□□□□ 0.52
CLN3-231	ENST00000568422	AARS	P49588	968 aa	Known RBP eCLIP	18.33	■□□□□ 0.52
CLN3-231	ENST00000568422	ZNF131	P52739	623 aa		18.33	■□□□□ 0.52
CLN3-231	ENST00000568422	CACNB1	Q02641	598 aa	Predicted RBP	18.33	■□□□□ 0.52
CLN3-231	ENST00000568422	LARP1B	Q659C4	914 aa	Known RBP	18.33	■□□□□ 0.52
CLN3-231	ENST00000568422	TANGO2	Q6ICL3	276 aa		18.33	■□□□□ 0.52
CLN3-231	ENST00000568422	ZNF852	Q6ZMS4	543 aa		18.33	■□□□□ 0.52
CLN3-231	ENST00000568422	BRAP	Q7Z569	592 aa		18.33	■□□□□ 0.52
CLN3-231	ENST00000568422	GPBP1	Q86WP2	473 aa		18.33	■□□□□ 0.52
CLN3-231	ENST00000568422	CD302	Q8IX05	232 aa		18.33	■□□□□ 0.52
CLN3-231	ENST00000568422	MYCT1	Q8N699	235 aa		18.33	■□□□□ 0.52
CLN3-231	ENST00000568422	RPF1	Q9H9Y2	349 aa	Known RBP	18.33	■□□□□ 0.52
CLN3-231	ENST00000568422	SPATA6	Q9NWH7	488 aa	Predicted RBP	18.33	■□□□□ 0.52
CLN3-231	ENST00000568422		R4GN57	208 aa		18.33	■□□□□ 0.52
CLN3-231	ENST00000568422	GVINP1	Q7Z2Y8	2422 aa		18.32	■□□□□ 0.52
CLN3-231	ENST00000568422	FRYL	O94915	3013 aa		18.32	■□□□□ 0.52
CLN3-231	ENST00000568422	OR6C75	A6NL08	312 aa		18.32	■□□□□ 0.52

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