RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 AGO4Q9HCK5 861 aaKnown RBP14.03□□□□□ -0.16
CLN3-210ENST00000563874 SAYSD1Q9NPB0 183 aa14.03□□□□□ -0.16
CLN3-210ENST00000563874 UBR3Q6ZT12 1888 aa14.02□□□□□ -0.16
CLN3-210ENST00000563874 EXOC1LA0A1B0GW35 172 aa14.02□□□□□ -0.16
CLN3-210ENST00000563874 FAM47DPA6NHR8 397 aa14.02□□□□□ -0.16
CLN3-210ENST00000563874 PIAS1O75925 651 aa14.02□□□□□ -0.16
CLN3-210ENST00000563874 MYCLP12524 364 aaPredicted RBP14.02□□□□□ -0.16
CLN3-210ENST00000563874 MAGEA4P43358 317 aa14.02□□□□□ -0.16
CLN3-210ENST00000563874 NSFP46459 744 aaKnown RBP14.02□□□□□ -0.16
CLN3-210ENST00000563874 NCKAP1LP55160 1127 aa14.02□□□□□ -0.16
CLN3-210ENST00000563874 ATP11AP98196 1134 aa14.02□□□□□ -0.16
CLN3-210ENST00000563874 BZW1Q7L1Q6 419 aaKnown RBP14.02□□□□□ -0.16
CLN3-210ENST00000563874 CCDC77Q9BR77 488 aa14.02□□□□□ -0.16
CLN3-210ENST00000563874 OSBPL8Q9BZF1 889 aa14.02□□□□□ -0.16
CLN3-210ENST00000563874 FHDC1Q9C0D6 1143 aaPredicted RBP14.02□□□□□ -0.16
CLN3-210ENST00000563874 TCEAL9Q9UHQ7 104 aa14.02□□□□□ -0.16
CLN3-210ENST00000563874 COQ4Q9Y3A0 265 aa14.02□□□□□ -0.16
CLN3-210ENST00000563874 MYPNQ86TC9 1320 aa14.02□□□□□ -0.17
CLN3-210ENST00000563874 ENTPD3O75355 529 aa14.02□□□□□ -0.17
CLN3-210ENST00000563874 UNC5CO95185 931 aa14.02□□□□□ -0.17
CLN3-210ENST00000563874 ETS1P14921 441 aa14.02□□□□□ -0.17
CLN3-210ENST00000563874 IL9RQ01113 521 aa14.02□□□□□ -0.17
CLN3-210ENST00000563874 KLF1Q13351 362 aaPredicted RBP14.02□□□□□ -0.17
CLN3-210ENST00000563874 MIS18BP1Q6P0N0 1132 aa14.02□□□□□ -0.17
CLN3-210ENST00000563874 LGALS13Q9UHV8 139 aa14.02□□□□□ -0.17
CLN3-210ENST00000563874 HAO1Q9UJM8 370 aa14.02□□□□□ -0.17
CLN3-210ENST00000563874 NEU2Q9Y3R4 380 aa14.02□□□□□ -0.17
CLN3-210ENST00000563874 ATRNL1Q5VV63 1379 aa14.02□□□□□ -0.17
CLN3-210ENST00000563874 NRXN2Q9P2S2 1712 aa14.01□□□□□ -0.17
CLN3-210ENST00000563874 HNRNPDLO14979 420 aaKnown RBP14.01□□□□□ -0.17
CLN3-210ENST00000563874 TCF4P15884 667 aa14.01□□□□□ -0.17
CLN3-210ENST00000563874 MAN1A1P33908 653 aa14.01□□□□□ -0.17
CLN3-210ENST00000563874 CAV1Q03135 178 aa14.01□□□□□ -0.17
CLN3-210ENST00000563874 ZNF449Q6P9G9 518 aa14.01□□□□□ -0.17
CLN3-210ENST00000563874 POTEAQ6S8J7 498 aa14.01□□□□□ -0.17
CLN3-210ENST00000563874 PPP1R21Q6ZMI0 780 aa14.01□□□□□ -0.17
CLN3-210ENST00000563874 SYDE1Q6ZW31 735 aaPredicted RBP14.01□□□□□ -0.17
CLN3-210ENST00000563874 CCDC89Q8N998 374 aa14.01□□□□□ -0.17
CLN3-210ENST00000563874 HAUS1Q96CS2 278 aa14.01□□□□□ -0.17
CLN3-210ENST00000563874 KMT5AQ9NQR1 393 aa14.01□□□□□ -0.17
CLN3-210ENST00000563874 SCAF8Q9UPN6 1271 aaKnown RBP14.01□□□□□ -0.17
CLN3-210ENST00000563874 ZNFX1Q9P2E3 1918 aaKnown RBP14.01□□□□□ -0.17
CLN3-210ENST00000563874 MAPK13O15264 365 aa14.01□□□□□ -0.17
CLN3-210ENST00000563874 KRT15P19012 456 aa14.01□□□□□ -0.17
CLN3-210ENST00000563874 DSG3P32926 999 aa14.01□□□□□ -0.17
CLN3-210ENST00000563874 CYP24A1Q07973 514 aa14.01□□□□□ -0.17
CLN3-210ENST00000563874 MKRN3Q13064 507 aaKnown RBP14.01□□□□□ -0.17
CLN3-210ENST00000563874 DMP1Q13316 513 aaPredicted RBP14.01□□□□□ -0.17
CLN3-210ENST00000563874 DGKZQ13574 1117 aa14.01□□□□□ -0.17
CLN3-210ENST00000563874 PKN2Q16513 984 aaKnown RBP14.01□□□□□ -0.17
CLN3-210ENST00000563874 SEPT12Q8IYM1 358 aa14.01□□□□□ -0.17
CLN3-210ENST00000563874 ANKRD35Q8N283 1001 aa14.01□□□□□ -0.17
CLN3-210ENST00000563874 FBF1Q8TES7 1133 aa14.01□□□□□ -0.17
CLN3-210ENST00000563874 MAIP1Q8WWC4 291 aa14.01□□□□□ -0.17
CLN3-210ENST00000563874 MASTLQ96GX5 879 aa14.01□□□□□ -0.17
CLN3-210ENST00000563874 FAXDC2Q96IV6 333 aa14.01□□□□□ -0.17
CLN3-210ENST00000563874 FAM167BQ9BTA0 163 aa14.01□□□□□ -0.17
CLN3-210ENST00000563874 NKX1-2Q9UD57 310 aaPredicted RBP14.01□□□□□ -0.17
CLN3-210ENST00000563874 GRID1Q9ULK0 1009 aa14.01□□□□□ -0.17
CLN3-210ENST00000563874 UMODL1Q5DID0 1318 aa14.01□□□□□ -0.17
CLN3-210ENST00000563874 PMM2O15305 246 aa14.01□□□□□ -0.17
CLN3-210ENST00000563874 NPM3O75607 178 aaKnown RBP14.01□□□□□ -0.17
CLN3-210ENST00000563874 TCEA3O75764 348 aa14.01□□□□□ -0.17
CLN3-210ENST00000563874 PROSCO94903 275 aa14.01□□□□□ -0.17
CLN3-210ENST00000563874 MMP10P09238 476 aa14.01□□□□□ -0.17
CLN3-210ENST00000563874 ATP2A2P16615 1042 aaKnown RBP14.01□□□□□ -0.17
CLN3-210ENST00000563874 ATF7P17544 494 aaPredicted RBP14.01□□□□□ -0.17
CLN3-210ENST00000563874 MTM1Q13496 603 aa14.01□□□□□ -0.17
CLN3-210ENST00000563874 STAT4Q14765 748 aa14.01□□□□□ -0.17
CLN3-210ENST00000563874 ANKRD20A2Q5SQ80 823 aa14.01□□□□□ -0.17
CLN3-210ENST00000563874 ANKRD20A1Q5TYW2 823 aa14.01□□□□□ -0.17
CLN3-210ENST00000563874 ANKRD20A3Q5VUR7 823 aa14.01□□□□□ -0.17
CLN3-210ENST00000563874 PCNX4Q63HM2 1172 aa14.01□□□□□ -0.17
CLN3-210ENST00000563874 RNF43Q68DV7 783 aa14.01□□□□□ -0.17
CLN3-210ENST00000563874 MAP4K3Q8IVH8 894 aa14.01□□□□□ -0.17
CLN3-210ENST00000563874 MAML1Q92585 1016 aa14.01□□□□□ -0.17
CLN3-210ENST00000563874 ACSF2Q96CM8 615 aaPredicted RBP14.01□□□□□ -0.17
CLN3-210ENST00000563874 IWS1Q96ST2 819 aa14.01□□□□□ -0.17
CLN3-210ENST00000563874 C1orf112Q9NSG2 853 aa14.01□□□□□ -0.17
CLN3-210ENST00000563874 PHTF1Q9UMS5 762 aa14.01□□□□□ -0.17
CLN3-210ENST00000563874 EXOC7Q9UPT5 735 aa14.01□□□□□ -0.17
CLN3-210ENST00000563874 CHKBQ9Y259 395 aa14.01□□□□□ -0.17
CLN3-210ENST00000563874 CCNE2O96020 404 aa14□□□□□ -0.17
CLN3-210ENST00000563874 CCNB1P14635 433 aa14□□□□□ -0.17
CLN3-210ENST00000563874 GCAP28676 217 aa14□□□□□ -0.17
CLN3-210ENST00000563874 SP4Q02446 784 aa14□□□□□ -0.17
CLN3-210ENST00000563874 MAB21L3Q8N8X9 362 aa14□□□□□ -0.17
CLN3-210ENST00000563874 ZNF516Q92618 1163 aa14□□□□□ -0.17
CLN3-210ENST00000563874 BICD1Q96G01 975 aa14□□□□□ -0.17
CLN3-210ENST00000563874 GJD4Q96KN9 370 aaPredicted RBP14□□□□□ -0.17
CLN3-210ENST00000563874 TRIM6Q9C030 488 aaPredicted RBP14□□□□□ -0.17
CLN3-210ENST00000563874 KIAA1586Q9HCI6 787 aa14□□□□□ -0.17
CLN3-210ENST00000563874 EURLQ9NYK6 297 aa14□□□□□ -0.17
CLN3-210ENST00000563874 BANF1O75531 89 aa14□□□□□ -0.17
CLN3-210ENST00000563874 UPP2O95045 317 aa14□□□□□ -0.17
CLN3-210ENST00000563874 RPA3P35244 121 aaPredicted RBP14□□□□□ -0.17
CLN3-210ENST00000563874 SLC1A1P43005 524 aa14□□□□□ -0.17
CLN3-210ENST00000563874 HSD17B4P51659 736 aa14□□□□□ -0.17
CLN3-210ENST00000563874 SLC8A3P57103 927 aa14□□□□□ -0.17
CLN3-210ENST00000563874 CENPCQ03188 943 aa14□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms