RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 CGNQ9P2M7 1197 aaKnown RBP14.53□□□□□ -0.08
CLK3-213ENST00000563842 MTRRQ9UBK8 725 aa14.53□□□□□ -0.08
CLK3-213ENST00000563842 TUBGCP4Q9UGJ1 667 aa14.53□□□□□ -0.08
CLK3-213ENST00000563842 BACE2Q9Y5Z0 518 aa14.53□□□□□ -0.08
CLK3-213ENST00000563842 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP14.52□□□□□ -0.09
CLK3-213ENST00000563842 TGM5O43548 720 aa14.52□□□□□ -0.09
CLK3-213ENST00000563842 EXTL3O43909 919 aa14.52□□□□□ -0.09
CLK3-213ENST00000563842 TKTP29401 623 aaKnown RBP14.52□□□□□ -0.09
CLK3-213ENST00000563842 NDUFA8P51970 172 aa14.52□□□□□ -0.09
CLK3-213ENST00000563842 EHHADHQ08426 723 aa14.52□□□□□ -0.09
CLK3-213ENST00000563842 KANK3Q6NY19 840 aa14.52□□□□□ -0.09
CLK3-213ENST00000563842 LILRA6Q6PI73 481 aa14.52□□□□□ -0.09
CLK3-213ENST00000563842 RTL10Q7L3V2 364 aa14.52□□□□□ -0.09
CLK3-213ENST00000563842 EPM2AIP1Q7L775 607 aaPredicted RBP14.52□□□□□ -0.09
CLK3-213ENST00000563842 HS2ST1Q7LGA3 356 aa14.52□□□□□ -0.09
CLK3-213ENST00000563842 GPR149Q86SP6 731 aa14.52□□□□□ -0.09
CLK3-213ENST00000563842 GLYCTKQ8IVS8 523 aa14.52□□□□□ -0.09
CLK3-213ENST00000563842 BRSK2Q8IWQ3 736 aa14.52□□□□□ -0.09
CLK3-213ENST00000563842 GPD1LQ8N335 351 aa14.52□□□□□ -0.09
CLK3-213ENST00000563842 CACTINQ8WUQ7 758 aaKnown RBP14.52□□□□□ -0.09
CLK3-213ENST00000563842 CHAMP1Q96JM3 812 aa14.52□□□□□ -0.09
CLK3-213ENST00000563842 CLSTN3Q9BQT9 956 aa14.52□□□□□ -0.09
CLK3-213ENST00000563842 OXCT2Q9BYC2 517 aaPredicted RBP14.52□□□□□ -0.09
CLK3-213ENST00000563842 FGFBP2Q9BYJ0 223 aa14.52□□□□□ -0.09
CLK3-213ENST00000563842 RHOBTB2Q9BYZ6 727 aa14.52□□□□□ -0.09
CLK3-213ENST00000563842 EXOC1Q9NV70 894 aa14.52□□□□□ -0.09
CLK3-213ENST00000563842 ZDHHC7Q9NXF8 308 aa14.52□□□□□ -0.09
CLK3-213ENST00000563842 CIZ1Q9ULV3 898 aaPredicted RBP14.52□□□□□ -0.09
CLK3-213ENST00000563842 NR2E1Q9Y466 385 aa14.52□□□□□ -0.09
CLK3-213ENST00000563842 DENND4AQ7Z401 1863 aa14.52□□□□□ -0.09
CLK3-213ENST00000563842 CCDC195A0A1B0GUA6 201 aa14.51□□□□□ -0.09
CLK3-213ENST00000563842 ALADP13716 330 aa14.51□□□□□ -0.09
CLK3-213ENST00000563842 RPL17P18621 184 aaKnown RBP14.51□□□□□ -0.09
CLK3-213ENST00000563842 CASP1P29466 404 aa14.51□□□□□ -0.09
CLK3-213ENST00000563842 RAB33AQ14088 237 aa14.51□□□□□ -0.09
CLK3-213ENST00000563842 SURF1Q15526 300 aa14.51□□□□□ -0.09
CLK3-213ENST00000563842 VARS2Q5ST30 1063 aaKnown RBP14.51□□□□□ -0.09
CLK3-213ENST00000563842 LIN9Q5TKA1 542 aa14.51□□□□□ -0.09
CLK3-213ENST00000563842 CRELD2Q6UXH1 353 aaPredicted RBP14.51□□□□□ -0.09
CLK3-213ENST00000563842 TMC5Q6UXY8 1006 aa14.51□□□□□ -0.09
CLK3-213ENST00000563842 C12orf76Q8N812 135 aaPredicted RBP14.51□□□□□ -0.09
CLK3-213ENST00000563842 KREMEN2Q8NCW0 462 aa14.51□□□□□ -0.09
CLK3-213ENST00000563842 GOLGA5Q8TBA6 731 aa14.51□□□□□ -0.09
CLK3-213ENST00000563842 HPS3Q969F9 1004 aa14.51□□□□□ -0.09
CLK3-213ENST00000563842 SAAL1Q96ER3 474 aa14.51□□□□□ -0.09
CLK3-213ENST00000563842 IKZF4Q9H2S9 585 aa14.51□□□□□ -0.09
CLK3-213ENST00000563842 PCIF1Q9H4Z3 704 aa14.51□□□□□ -0.09
CLK3-213ENST00000563842 GDPD2Q9HCC8 539 aa14.51□□□□□ -0.09
CLK3-213ENST00000563842 SLC39A2Q9NP94 309 aa14.51□□□□□ -0.09
CLK3-213ENST00000563842 RBAKQ9NYW8 714 aaPredicted RBP14.51□□□□□ -0.09
CLK3-213ENST00000563842 PCDHB8Q9UN66 801 aa14.51□□□□□ -0.09
CLK3-213ENST00000563842 C5orf42Q9H799 3197 aa14.51□□□□□ -0.09
CLK3-213ENST00000563842 DOCK6Q96HP0 2047 aa14.51□□□□□ -0.09
CLK3-213ENST00000563842 ZNF233A6NK53 670 aa14.5□□□□□ -0.09
CLK3-213ENST00000563842 LOC730098B7Z3J9 87 aa14.5□□□□□ -0.09
CLK3-213ENST00000563842 I3L4J1 428 aa14.5□□□□□ -0.09
CLK3-213ENST00000563842 M0QZQ0 153 aa14.5□□□□□ -0.09
CLK3-213ENST00000563842 ZNF202O95125 648 aa14.5□□□□□ -0.09
CLK3-213ENST00000563842 KIF20AO95235 890 aa14.5□□□□□ -0.09
CLK3-213ENST00000563842 NFICP08651 508 aa14.5□□□□□ -0.09
CLK3-213ENST00000563842 OR1D2P34982 312 aa14.5□□□□□ -0.09
CLK3-213ENST00000563842 BMT2Q1RMZ1 405 aa14.5□□□□□ -0.09
CLK3-213ENST00000563842 UVSSAQ2YD98 709 aa14.5□□□□□ -0.09
CLK3-213ENST00000563842 C9orf57Q5W0N0 161 aa14.5□□□□□ -0.09
CLK3-213ENST00000563842 ZNF280DQ6N043 979 aa14.5□□□□□ -0.09
CLK3-213ENST00000563842 DSTYKQ6XUX3 929 aa14.5□□□□□ -0.09
CLK3-213ENST00000563842 KRBA2Q6ZNG9 492 aa14.5□□□□□ -0.09
CLK3-213ENST00000563842 USP37Q86T82 979 aa14.5□□□□□ -0.09
CLK3-213ENST00000563842 GRAMD1CQ8IYS0 662 aa14.5□□□□□ -0.09
CLK3-213ENST00000563842 GLIS3Q8NEA6 775 aa14.5□□□□□ -0.09
CLK3-213ENST00000563842 NOC3LQ8WTT2 800 aaKnown RBP14.5□□□□□ -0.09
CLK3-213ENST00000563842 SCFD1Q8WVM8 642 aa14.5□□□□□ -0.09
CLK3-213ENST00000563842 RPGRIP1Q96KN7 1286 aa14.5□□□□□ -0.09
CLK3-213ENST00000563842 CBWD1Q9BRT8 395 aa14.5□□□□□ -0.09
CLK3-213ENST00000563842 CD320Q9NPF0 282 aa14.5□□□□□ -0.09
CLK3-213ENST00000563842 DPP3Q9NY33 737 aa14.5□□□□□ -0.09
CLK3-213ENST00000563842 CDY1Q9Y6F8 540 aa14.5□□□□□ -0.09
CLK3-213ENST00000563842 GOLGA8IPA6NC78 632 aa14.49□□□□□ -0.09
CLK3-213ENST00000563842 GOLGA8JA6NMD2 632 aa14.49□□□□□ -0.09
CLK3-213ENST00000563842 TULP1O00294 542 aaPredicted RBP14.49□□□□□ -0.09
CLK3-213ENST00000563842 KLRC4O43908 158 aa14.49□□□□□ -0.09
CLK3-213ENST00000563842 ZMYND10O75800 440 aa14.49□□□□□ -0.09
CLK3-213ENST00000563842 HNRNPA1P09651 372 aaKnown RBP eCLIP14.49□□□□□ -0.09
CLK3-213ENST00000563842 SPATA31D3P0C874 917 aa14.49□□□□□ -0.09
CLK3-213ENST00000563842 IGFBP6P24592 240 aaPredicted RBP14.49□□□□□ -0.09
CLK3-213ENST00000563842 HOXA9P31269 272 aa14.49□□□□□ -0.09
CLK3-213ENST00000563842 ANP32AP39687 249 aaKnown RBP14.49□□□□□ -0.09
CLK3-213ENST00000563842 AARSP49588 968 aaKnown RBP eCLIP14.49□□□□□ -0.09
CLK3-213ENST00000563842 MRPL58Q14197 206 aaKnown RBP14.49□□□□□ -0.09
CLK3-213ENST00000563842 KNOP1Q1ED39 458 aaKnown RBP14.49□□□□□ -0.09
CLK3-213ENST00000563842 KMT5BQ4FZB7 885 aa14.49□□□□□ -0.09
CLK3-213ENST00000563842 CTXN3Q4LDR2 81 aa14.49□□□□□ -0.09
CLK3-213ENST00000563842 SLC8B1Q6J4K2 584 aa14.49□□□□□ -0.09
CLK3-213ENST00000563842 SPATA31D4Q6ZUB0 917 aa14.49□□□□□ -0.09
CLK3-213ENST00000563842 CCDC149Q6ZUS6 474 aa14.49□□□□□ -0.09
CLK3-213ENST00000563842 PLCD3Q8N3E9 789 aa14.49□□□□□ -0.09
CLK3-213ENST00000563842 POMKQ9H5K3 350 aa14.49□□□□□ -0.09
CLK3-213ENST00000563842 PIDD1Q9HB75 910 aa14.49□□□□□ -0.09
CLK3-213ENST00000563842 HSPBP1Q9NZL4 362 aa14.49□□□□□ -0.09
CLK3-213ENST00000563842 FBXW11Q9UKB1 542 aa14.49□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms