RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 ASGR2P07307 311 aa17.01■□□□□ 0.31
VPS39-203ENST00000561797 C8AP07357 584 aa17.01■□□□□ 0.31
VPS39-203ENST00000561797 ADRB2P07550 413 aa17.01■□□□□ 0.31
VPS39-203ENST00000561797 NFICP08651 508 aa17.01■□□□□ 0.31
VPS39-203ENST00000561797 CYP3A5P20815 502 aa17.01■□□□□ 0.31
VPS39-203ENST00000561797 ADSSP30520 456 aa17.01■□□□□ 0.31
VPS39-203ENST00000561797 LRPAP1P30533 357 aa17.01■□□□□ 0.31
VPS39-203ENST00000561797 ASIC1P78348 528 aa17.01■□□□□ 0.31
VPS39-203ENST00000561797 AMPD3Q01432 767 aa17.01■□□□□ 0.31
VPS39-203ENST00000561797 POSTNQ15063 836 aa17.01■□□□□ 0.31
VPS39-203ENST00000561797 PPM1LQ5SGD2 360 aa17.01■□□□□ 0.31
VPS39-203ENST00000561797 RESP18Q5W5W9 173 aa17.01■□□□□ 0.31
VPS39-203ENST00000561797 CYP26C1Q6V0L0 522 aa17.01■□□□□ 0.31
VPS39-203ENST00000561797 OTOP3Q7RTS5 596 aa17.01■□□□□ 0.31
VPS39-203ENST00000561797 ZDHHC14Q8IZN3 488 aa17.01■□□□□ 0.31
VPS39-203ENST00000561797 HPS3Q969F9 1004 aa17.01■□□□□ 0.31
VPS39-203ENST00000561797 TRIM9Q9C026 710 aa17.01■□□□□ 0.31
VPS39-203ENST00000561797 WDR6Q9NNW5 1121 aaKnown RBP17.01■□□□□ 0.31
VPS39-203ENST00000561797 CLUHO75153 1309 aa17■□□□□ 0.31
VPS39-203ENST00000561797 H7C4K7 107 aa17■□□□□ 0.31
VPS39-203ENST00000561797 CCL16O15467 120 aa17■□□□□ 0.31
VPS39-203ENST00000561797 GBP2P32456 591 aaPredicted RBP17■□□□□ 0.31
VPS39-203ENST00000561797 ALCAMQ13740 583 aa17■□□□□ 0.31
VPS39-203ENST00000561797 TMEM132DQ14C87 1099 aa17■□□□□ 0.31
VPS39-203ENST00000561797 CTXN3Q4LDR2 81 aa17■□□□□ 0.31
VPS39-203ENST00000561797 SPATA1Q5VX52 437 aa17■□□□□ 0.31
VPS39-203ENST00000561797 CRELD2Q6UXH1 353 aaPredicted RBP17■□□□□ 0.31
VPS39-203ENST00000561797 TRIM67Q6ZTA4 783 aa17■□□□□ 0.31
VPS39-203ENST00000561797 GLIS3Q8NEA6 775 aa17■□□□□ 0.31
VPS39-203ENST00000561797 ZSWIM2Q8NEG5 633 aa17■□□□□ 0.31
VPS39-203ENST00000561797 BEST2Q8NFU1 509 aa17■□□□□ 0.31
VPS39-203ENST00000561797 SLC7A14Q8TBB6 771 aa17■□□□□ 0.31
VPS39-203ENST00000561797 NOC3LQ8WTT2 800 aaKnown RBP17■□□□□ 0.31
VPS39-203ENST00000561797 SAAL1Q96ER3 474 aa17■□□□□ 0.31
VPS39-203ENST00000561797 TSPAN18Q96SJ8 248 aa17■□□□□ 0.31
VPS39-203ENST00000561797 FAM213AQ9BRX8 229 aa17■□□□□ 0.31
VPS39-203ENST00000561797 RHOBTB2Q9BYZ6 727 aa17■□□□□ 0.31
VPS39-203ENST00000561797 PCDHB8Q9UN66 801 aa17■□□□□ 0.31
VPS39-203ENST00000561797 POLIQ9UNA4 740 aa17■□□□□ 0.31
VPS39-203ENST00000561797 GTF3C5Q9Y5Q8 519 aaPredicted RBP17■□□□□ 0.31
VPS39-203ENST00000561797 TMEM221A6NGB7 291 aa16.99■□□□□ 0.31
VPS39-203ENST00000561797 M0R296 226 aa16.99■□□□□ 0.31
VPS39-203ENST00000561797 PPEF2O14830 753 aa16.99■□□□□ 0.31
VPS39-203ENST00000561797 CASP1P29466 404 aa16.99■□□□□ 0.31
VPS39-203ENST00000561797 AFMP43652 599 aa16.99■□□□□ 0.31
VPS39-203ENST00000561797 ROR1Q01973 937 aa16.99■□□□□ 0.31
VPS39-203ENST00000561797 MRPL58Q14197 206 aaKnown RBP16.99■□□□□ 0.31
VPS39-203ENST00000561797 DSTYKQ6XUX3 929 aa16.99■□□□□ 0.31
VPS39-203ENST00000561797 HFE2Q6ZVN8 426 aa16.99■□□□□ 0.31
VPS39-203ENST00000561797 APPL2Q8NEU8 664 aa16.99■□□□□ 0.31
VPS39-203ENST00000561797 SPATA32Q96LK8 384 aa16.99■□□□□ 0.31
VPS39-203ENST00000561797 BLZF1Q9H2G9 400 aa16.99■□□□□ 0.31
VPS39-203ENST00000561797 SMOC2Q9H3U7 446 aa16.99■□□□□ 0.31
VPS39-203ENST00000561797 PCIF1Q9H4Z3 704 aa16.99■□□□□ 0.31
VPS39-203ENST00000561797 ASB7Q9H672 318 aa16.99■□□□□ 0.31
VPS39-203ENST00000561797 FBXL5Q9UKA1 691 aa16.99■□□□□ 0.31
VPS39-203ENST00000561797 SORCS3Q9UPU3 1222 aa16.99■□□□□ 0.31
VPS39-203ENST00000561797 TIMM13Q9Y5L4 95 aaPredicted RBP16.99■□□□□ 0.31
VPS39-203ENST00000561797 WDR27A2RRH5 827 aa16.98■□□□□ 0.31
VPS39-203ENST00000561797 GOLGA8IPA6NC78 632 aa16.98■□□□□ 0.31
VPS39-203ENST00000561797 GOLGA8JA6NMD2 632 aa16.98■□□□□ 0.31
VPS39-203ENST00000561797 TBC1D4O60343 1298 aa16.98■□□□□ 0.31
VPS39-203ENST00000561797 N4BP1O75113 896 aaKnown RBP16.98■□□□□ 0.31
VPS39-203ENST00000561797 PAPLNO95428 1278 aa16.98■□□□□ 0.31
VPS39-203ENST00000561797 HNRNPA1P09651 372 aaKnown RBP eCLIP16.98■□□□□ 0.31
VPS39-203ENST00000561797 KRT85P78386 507 aa16.98■□□□□ 0.31
VPS39-203ENST00000561797 NTHL1P78549 312 aa16.98■□□□□ 0.31
VPS39-203ENST00000561797 SIGLEC14Q08ET2 396 aa16.98■□□□□ 0.31
VPS39-203ENST00000561797 SLC8B1Q6J4K2 584 aa16.98■□□□□ 0.31
VPS39-203ENST00000561797 ZNF280DQ6N043 979 aa16.98■□□□□ 0.31
VPS39-203ENST00000561797 STXBP4Q6ZWJ1 553 aa16.98■□□□□ 0.31
VPS39-203ENST00000561797 GRASPQ7Z6J2 395 aaPredicted RBP16.98■□□□□ 0.31
VPS39-203ENST00000561797 ZNF461Q8TAF7 563 aa16.98■□□□□ 0.31
VPS39-203ENST00000561797 MYADMQ96S97 322 aa16.98■□□□□ 0.31
VPS39-203ENST00000561797 C7orf25Q9BPX7 421 aa16.98■□□□□ 0.31
VPS39-203ENST00000561797 CBWD1Q9BRT8 395 aa16.98■□□□□ 0.31
VPS39-203ENST00000561797 TMEM206Q9H813 350 aa16.98■□□□□ 0.31
VPS39-203ENST00000561797 SERTAD1Q9UHV2 236 aa16.98■□□□□ 0.31
VPS39-203ENST00000561797 KCNH3Q9ULD8 1083 aa16.98■□□□□ 0.31
VPS39-203ENST00000561797 DERAQ9Y315 318 aa16.98■□□□□ 0.31
VPS39-203ENST00000561797 KMT2EQ8IZD2 1858 aa16.97■□□□□ 0.31
VPS39-203ENST00000561797 M0QZQ0 153 aa16.97■□□□□ 0.31
VPS39-203ENST00000561797 XYLBO75191 536 aa16.97■□□□□ 0.31
VPS39-203ENST00000561797 LDHAP00338 332 aaKnown RBP16.97■□□□□ 0.31
VPS39-203ENST00000561797 GARTP22102 1010 aa16.97■□□□□ 0.31
VPS39-203ENST00000561797 ELF1P32519 619 aa16.97■□□□□ 0.31
VPS39-203ENST00000561797 MTMR3Q13615 1198 aa16.97■□□□□ 0.31
VPS39-203ENST00000561797 UVSSAQ2YD98 709 aa16.97■□□□□ 0.31
VPS39-203ENST00000561797 C9orf57Q5W0N0 161 aa16.97■□□□□ 0.31
VPS39-203ENST00000561797 ARMCX5Q6P1M9 558 aa16.97■□□□□ 0.31
VPS39-203ENST00000561797 GET4Q7L5D6 327 aaPredicted RBP16.97■□□□□ 0.31
VPS39-203ENST00000561797 GRAMD1CQ8IYS0 662 aa16.97■□□□□ 0.31
VPS39-203ENST00000561797 CEP57L1Q8IYX8 460 aa16.97■□□□□ 0.31
VPS39-203ENST00000561797 LEO1Q8WVC0 666 aaPredicted RBP16.97■□□□□ 0.31
VPS39-203ENST00000561797 PBXIP1Q96AQ6 731 aa16.97■□□□□ 0.31
VPS39-203ENST00000561797 MAGEF1Q9HAY2 307 aa16.97■□□□□ 0.31
VPS39-203ENST00000561797 DPP3Q9NY33 737 aa16.97■□□□□ 0.31
VPS39-203ENST00000561797 HCN4Q9Y3Q4 1203 aa16.97■□□□□ 0.31
VPS39-203ENST00000561797 A0A1B0GVL5 298 aa16.96■□□□□ 0.31
VPS39-203ENST00000561797 PIRO00625 290 aa16.96■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms