RNA–Protein interactions for RNA: ENST00000561253.5

LRRC28-220, Transcript of leucine rich repeat containing 28, humanhuman

TSL 4

Gene LRRC28, Length 574 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-220ENST00000561253 SAPCD2Q86UD0 394 aa7.05□□□□□ -1.28
LRRC28-220ENST00000561253 MAPKAPK5Q8IW41 473 aa7.05□□□□□ -1.28
LRRC28-220ENST00000561253 SMARCC2Q8TAQ2 1214 aa7.05□□□□□ -1.28
LRRC28-220ENST00000561253 COG1Q8WTW3 980 aa7.05□□□□□ -1.28
LRRC28-220ENST00000561253 ASB15Q8WXK1 588 aa7.05□□□□□ -1.28
LRRC28-220ENST00000561253 KCNN1Q92952 543 aa7.05□□□□□ -1.28
LRRC28-220ENST00000561253 RILPL2Q969X0 211 aa7.05□□□□□ -1.28
LRRC28-220ENST00000561253 CRNKL1Q9BZJ0 848 aaKnown RBP7.05□□□□□ -1.28
LRRC28-220ENST00000561253 ATP8A2Q9NTI2 1148 aa7.05□□□□□ -1.28
LRRC28-220ENST00000561253 FZD1Q9UP38 647 aa7.05□□□□□ -1.28
LRRC28-220ENST00000561253 ROBO3Q96MS0 1386 aa7.05□□□□□ -1.28
LRRC28-220ENST00000561253 ZMYM6O95789 1325 aa7.04□□□□□ -1.28
LRRC28-220ENST00000561253 CCDC171Q6TFL3 1326 aa7.04□□□□□ -1.28
LRRC28-220ENST00000561253 RAD50Q92878 1312 aa7.04□□□□□ -1.28
LRRC28-220ENST00000561253 RASSF10A6NK89 507 aa7.04□□□□□ -1.28
LRRC28-220ENST00000561253 CELF2O95319 508 aaKnown RBP7.04□□□□□ -1.28
LRRC28-220ENST00000561253 PDGFRBP09619 1106 aa7.04□□□□□ -1.28
LRRC28-220ENST00000561253 CYP2D6P10635 497 aa7.04□□□□□ -1.28
LRRC28-220ENST00000561253 HSPD1P10809 573 aaKnown RBP7.04□□□□□ -1.28
LRRC28-220ENST00000561253 ATF2P15336 505 aa7.04□□□□□ -1.28
LRRC28-220ENST00000561253 AOAHP28039 575 aa7.04□□□□□ -1.28
LRRC28-220ENST00000561253 FKBP1BP68106 108 aa7.04□□□□□ -1.28
LRRC28-220ENST00000561253 JAG1P78504 1218 aa7.04□□□□□ -1.28
LRRC28-220ENST00000561253 ADCY1Q08828 1119 aa7.04□□□□□ -1.28
LRRC28-220ENST00000561253 ITKQ08881 620 aa7.04□□□□□ -1.28
LRRC28-220ENST00000561253 PICALMQ13492 652 aa7.04□□□□□ -1.28
LRRC28-220ENST00000561253 LRRC32Q14392 662 aa7.04□□□□□ -1.28
LRRC28-220ENST00000561253 EPHA7Q15375 998 aa7.04□□□□□ -1.28
LRRC28-220ENST00000561253 TERF2Q15554 542 aa7.04□□□□□ -1.28
LRRC28-220ENST00000561253 SBK1Q52WX2 424 aa7.04□□□□□ -1.28
LRRC28-220ENST00000561253 ESRP1Q6NXG1 681 aaKnown RBP7.04□□□□□ -1.28
LRRC28-220ENST00000561253 CTR9Q6PD62 1173 aa7.04□□□□□ -1.28
LRRC28-220ENST00000561253 ZNF610Q8N9Z0 462 aa7.04□□□□□ -1.28
LRRC28-220ENST00000561253 CLRN3Q8NCR9 226 aa7.04□□□□□ -1.28
LRRC28-220ENST00000561253 DDX55Q8NHQ9 600 aaKnown RBP eCLIP7.04□□□□□ -1.28
LRRC28-220ENST00000561253 E2F7Q96AV8 911 aa7.04□□□□□ -1.28
LRRC28-220ENST00000561253 CEP89Q96ST8 783 aa7.04□□□□□ -1.28
LRRC28-220ENST00000561253 GBA2Q9HCG7 927 aaPredicted RBP7.04□□□□□ -1.28
LRRC28-220ENST00000561253 PCDH18Q9HCL0 1135 aa7.04□□□□□ -1.28
LRRC28-220ENST00000561253 TMOD2Q9NZR1 351 aa7.04□□□□□ -1.28
LRRC28-220ENST00000561253 RBPJLQ9UBG7 517 aa7.04□□□□□ -1.28
LRRC28-220ENST00000561253 NOC2LQ9Y3T9 749 aaKnown RBP7.04□□□□□ -1.28
LRRC28-220ENST00000561253 ASB1Q9Y576 335 aa7.04□□□□□ -1.28
LRRC28-220ENST00000561253 CYP2D7A0A087X1C5 515 aa7.03□□□□□ -1.28
LRRC28-220ENST00000561253 HIP1O00291 1037 aa7.03□□□□□ -1.28
LRRC28-220ENST00000561253 KATNA1O75449 491 aa7.03□□□□□ -1.28
LRRC28-220ENST00000561253 HSPA6P17066 643 aa7.03□□□□□ -1.28
LRRC28-220ENST00000561253 GNAT2P19087 354 aa7.03□□□□□ -1.28
LRRC28-220ENST00000561253 PTGS1P23219 599 aa7.03□□□□□ -1.28
LRRC28-220ENST00000561253 SHMT1P34896 483 aa7.03□□□□□ -1.28
LRRC28-220ENST00000561253 EPHB3P54753 998 aa7.03□□□□□ -1.28
LRRC28-220ENST00000561253 HTRA3P83110 453 aa7.03□□□□□ -1.28
LRRC28-220ENST00000561253 PFKPQ01813 784 aa7.03□□□□□ -1.28
LRRC28-220ENST00000561253 PTH1RQ03431 593 aa7.03□□□□□ -1.28
LRRC28-220ENST00000561253 SHROOM1Q2M3G4 852 aaPredicted RBP7.03□□□□□ -1.28
LRRC28-220ENST00000561253 SUPT20HL1Q3ZLR7 823 aa7.03□□□□□ -1.28
LRRC28-220ENST00000561253 BRDTQ58F21 947 aaPredicted RBP7.03□□□□□ -1.28
LRRC28-220ENST00000561253 C12orf60Q5U649 245 aa7.03□□□□□ -1.28
LRRC28-220ENST00000561253 CWC27Q6UX04 472 aaKnown RBP7.03□□□□□ -1.28
LRRC28-220ENST00000561253 TMC5Q6UXY8 1006 aa7.03□□□□□ -1.28
LRRC28-220ENST00000561253 B3GNT8Q7Z7M8 397 aa7.03□□□□□ -1.28
LRRC28-220ENST00000561253 IGDCC3Q8IVU1 814 aa7.03□□□□□ -1.28
LRRC28-220ENST00000561253 CNTD1Q8N815 330 aa7.03□□□□□ -1.28
LRRC28-220ENST00000561253 C16orf92Q96LL3 132 aa7.03□□□□□ -1.28
LRRC28-220ENST00000561253 LSG1Q9H089 658 aaKnown RBP7.03□□□□□ -1.28
LRRC28-220ENST00000561253 DHX36Q9H2U1 1008 aaKnown RBP7.03□□□□□ -1.28
LRRC28-220ENST00000561253 ZMAT4Q9H898 229 aa7.03□□□□□ -1.28
LRRC28-220ENST00000561253 GCM1Q9NP62 436 aa7.03□□□□□ -1.28
LRRC28-220ENST00000561253 SLC39A2Q9NP94 309 aa7.03□□□□□ -1.28
LRRC28-220ENST00000561253 UCKL1Q9NWZ5 548 aa7.03□□□□□ -1.28
LRRC28-220ENST00000561253 PI4KBQ9UBF8 816 aa7.03□□□□□ -1.28
LRRC28-220ENST00000561253 SAP30BPQ9UHR5 308 aaKnown RBP7.03□□□□□ -1.28
LRRC28-220ENST00000561253 ANAPC4Q9UJX5 808 aa7.03□□□□□ -1.28
LRRC28-220ENST00000561253 DDX52Q9Y2R4 599 aaKnown RBP eCLIP7.03□□□□□ -1.28
LRRC28-220ENST00000561253 SLC4A4Q9Y6R1 1079 aa7.03□□□□□ -1.28
LRRC28-220ENST00000561253 TRPM7Q96QT4 1865 aa7.02□□□□□ -1.28
LRRC28-220ENST00000561253 UBA6A0AVT1 1052 aaPredicted RBP7.02□□□□□ -1.29
LRRC28-220ENST00000561253 ZNF839A8K0R7 811 aa7.02□□□□□ -1.29
LRRC28-220ENST00000561253 GOLGA6L22H0YM25 854 aa7.02□□□□□ -1.29
LRRC28-220ENST00000561253 PRKD3O94806 890 aa7.02□□□□□ -1.29
LRRC28-220ENST00000561253 FGAP02671 866 aa7.02□□□□□ -1.29
LRRC28-220ENST00000561253 GUCY1A2P33402 732 aa7.02□□□□□ -1.29
LRRC28-220ENST00000561253 DLG4P78352 724 aa7.02□□□□□ -1.29
LRRC28-220ENST00000561253 EXOSC10Q01780 885 aaKnown RBP7.02□□□□□ -1.29
LRRC28-220ENST00000561253 TATDN1Q6P1N9 297 aa7.02□□□□□ -1.29
LRRC28-220ENST00000561253 LIPIQ6XZB0 460 aa7.02□□□□□ -1.29
LRRC28-220ENST00000561253 MIGA2Q7L4E1 593 aa7.02□□□□□ -1.29
LRRC28-220ENST00000561253 RASSF3Q86WH2 238 aa7.02□□□□□ -1.29
LRRC28-220ENST00000561253 PROSER1Q86XN7 944 aa7.02□□□□□ -1.29
LRRC28-220ENST00000561253 FOXP4Q8IVH2 680 aaPredicted RBP7.02□□□□□ -1.29
LRRC28-220ENST00000561253 DNAJC5GQ8N7S2 189 aa7.02□□□□□ -1.29
LRRC28-220ENST00000561253 C7orf31Q8N865 590 aa7.02□□□□□ -1.29
LRRC28-220ENST00000561253 SLC44A5Q8NCS7 719 aa7.02□□□□□ -1.29
LRRC28-220ENST00000561253 STAG1Q8WVM7 1258 aa7.02□□□□□ -1.29
LRRC28-220ENST00000561253 MTMR8Q96EF0 704 aa7.02□□□□□ -1.29
LRRC28-220ENST00000561253 AHCYL2Q96HN2 611 aaKnown RBP7.02□□□□□ -1.29
LRRC28-220ENST00000561253 CLMNQ96JQ2 1002 aa7.02□□□□□ -1.29
LRRC28-220ENST00000561253 TMEM209Q96SK2 561 aa7.02□□□□□ -1.29
LRRC28-220ENST00000561253 NOL10Q9BSC4 688 aaKnown RBP7.02□□□□□ -1.29
LRRC28-220ENST00000561253 DLL4Q9NR61 685 aa7.02□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms