RNA–Protein interactions for RNA: ENST00000559898.5

HDDC3-205, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,024 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-205ENST00000559898 OGTO15294 1046 aa19.31■□□□□ 0.68
HDDC3-205ENST00000559898 TRAPPC3O43617 180 aa19.31■□□□□ 0.68
HDDC3-205ENST00000559898 TBCAO75347 108 aaKnown RBP19.31■□□□□ 0.68
HDDC3-205ENST00000559898 ABLIM3O94929 683 aa19.31■□□□□ 0.68
HDDC3-205ENST00000559898 NFICP08651 508 aa19.31■□□□□ 0.68
HDDC3-205ENST00000559898 RPL9P32969 192 aaKnown RBP19.31■□□□□ 0.68
HDDC3-205ENST00000559898 SLC39A14Q15043 492 aa19.31■□□□□ 0.68
HDDC3-205ENST00000559898 JADE1Q6IE81 842 aa19.31■□□□□ 0.68
HDDC3-205ENST00000559898 SLC8B1Q6J4K2 584 aa19.31■□□□□ 0.68
HDDC3-205ENST00000559898 PDXDC1Q6P996 788 aa19.31■□□□□ 0.68
HDDC3-205ENST00000559898 ELMSAN1Q6PJG2 1045 aa19.31■□□□□ 0.68
HDDC3-205ENST00000559898 SIX5Q8N196 739 aa19.31■□□□□ 0.68
HDDC3-205ENST00000559898 FLCNQ8NFG4 579 aa19.31■□□□□ 0.68
HDDC3-205ENST00000559898 MSTO1Q9BUK6 570 aa19.31■□□□□ 0.68
HDDC3-205ENST00000559898 STRA6Q9BX79 667 aa19.31■□□□□ 0.68
HDDC3-205ENST00000559898 KCNH6Q9H252 994 aa19.31■□□□□ 0.68
HDDC3-205ENST00000559898 IGSF9Q9P2J2 1179 aa19.31■□□□□ 0.68
HDDC3-205ENST00000559898 CPSF3Q9UKF6 684 aaKnown RBP19.31■□□□□ 0.68
HDDC3-205ENST00000559898 CA14Q9ULX7 337 aa19.31■□□□□ 0.68
HDDC3-205ENST00000559898 H0Y858 1186 aa19.3■□□□□ 0.68
HDDC3-205ENST00000559898 SPTLC1O15269 473 aa19.3■□□□□ 0.68
HDDC3-205ENST00000559898 PPP1R37O75864 691 aa19.3■□□□□ 0.68
HDDC3-205ENST00000559898 ADRB2P07550 413 aa19.3■□□□□ 0.68
HDDC3-205ENST00000559898 HNRNPA1P09651 372 aaKnown RBP eCLIP19.3■□□□□ 0.68
HDDC3-205ENST00000559898 ADSSP30520 456 aa19.3■□□□□ 0.68
HDDC3-205ENST00000559898 LRPAP1P30533 357 aa19.3■□□□□ 0.68
HDDC3-205ENST00000559898 HOXA9P31269 272 aa19.3■□□□□ 0.68
HDDC3-205ENST00000559898 MRE11P49959 708 aa19.3■□□□□ 0.68
HDDC3-205ENST00000559898 FOXD4L6Q3SYB3 417 aaPredicted RBP19.3■□□□□ 0.68
HDDC3-205ENST00000559898 CTXN3Q4LDR2 81 aa19.3■□□□□ 0.68
HDDC3-205ENST00000559898 RRAGBQ5VZM2 374 aa19.3■□□□□ 0.68
HDDC3-205ENST00000559898 CRELD2Q6UXH1 353 aaPredicted RBP19.3■□□□□ 0.68
HDDC3-205ENST00000559898 FOXD4L3Q6VB84 417 aaPredicted RBP19.3■□□□□ 0.68
HDDC3-205ENST00000559898 ZNF720Q7Z2F6 126 aa19.3■□□□□ 0.68
HDDC3-205ENST00000559898 ZNF461Q8TAF7 563 aa19.3■□□□□ 0.68
HDDC3-205ENST00000559898 FGF13Q92913 245 aa19.3■□□□□ 0.68
HDDC3-205ENST00000559898 TCEAL4Q96EI5 215 aa19.3■□□□□ 0.68
HDDC3-205ENST00000559898 CRISPLD1Q9H336 500 aa19.3■□□□□ 0.68
HDDC3-205ENST00000559898 H0YCG3 227 aa19.29■□□□□ 0.68
HDDC3-205ENST00000559898 SYN3O14994 580 aa19.29■□□□□ 0.68
HDDC3-205ENST00000559898 PPP2R3AQ06190 1150 aa19.29■□□□□ 0.68
HDDC3-205ENST00000559898 PKP1Q13835 747 aa19.29■□□□□ 0.68
HDDC3-205ENST00000559898 ASTLQ6HA08 431 aaPredicted RBP19.29■□□□□ 0.68
HDDC3-205ENST00000559898 RNF19BQ6ZMZ0 732 aa19.29■□□□□ 0.68
HDDC3-205ENST00000559898 HS6ST3Q8IZP7 471 aa19.29■□□□□ 0.68
HDDC3-205ENST00000559898 PDILTQ8N807 584 aa19.29■□□□□ 0.68
HDDC3-205ENST00000559898 GLIS3Q8NEA6 775 aa19.29■□□□□ 0.68
HDDC3-205ENST00000559898 GPR152Q8TDT2 470 aa19.29■□□□□ 0.68
HDDC3-205ENST00000559898 HPS3Q969F9 1004 aa19.29■□□□□ 0.68
HDDC3-205ENST00000559898 TMEM209Q96SK2 561 aa19.29■□□□□ 0.68
HDDC3-205ENST00000559898 RPF1Q9H9Y2 349 aaKnown RBP19.29■□□□□ 0.68
HDDC3-205ENST00000559898 PLEKHA5Q9HAU0 1116 aa19.29■□□□□ 0.68
HDDC3-205ENST00000559898 STK17AQ9UEE5 414 aa19.29■□□□□ 0.68
HDDC3-205ENST00000559898 KCNG1Q9UIX4 513 aa19.29■□□□□ 0.68
HDDC3-205ENST00000559898 PCDHB8Q9UN66 801 aa19.29■□□□□ 0.68
HDDC3-205ENST00000559898 M0QZQ0 153 aa19.28■□□□□ 0.68
HDDC3-205ENST00000559898 RHOP08100 348 aa19.28■□□□□ 0.68
HDDC3-205ENST00000559898 CEBPBP17676 345 aa19.28■□□□□ 0.68
HDDC3-205ENST00000559898 CCR2P41597 374 aa19.28■□□□□ 0.68
HDDC3-205ENST00000559898 NASPP49321 788 aaPredicted RBP19.28■□□□□ 0.68
HDDC3-205ENST00000559898 NPAS3Q8IXF0 933 aa19.28■□□□□ 0.68
HDDC3-205ENST00000559898 KRI1Q8N9T8 703 aaKnown RBP19.28■□□□□ 0.68
HDDC3-205ENST00000559898 SPRYD3Q8NCJ5 442 aa19.28■□□□□ 0.68
HDDC3-205ENST00000559898 LINC00301Q8NCQ3 95 aa19.28■□□□□ 0.68
HDDC3-205ENST00000559898 KXD1Q9BQD3 176 aa19.28■□□□□ 0.68
HDDC3-205ENST00000559898 PLA2G2FQ9BZM2 168 aa19.28■□□□□ 0.68
HDDC3-205ENST00000559898 MFSD1Q9H3U5 465 aa19.28■□□□□ 0.68
HDDC3-205ENST00000559898 CYP4F11Q9HBI6 524 aa19.28■□□□□ 0.68
HDDC3-205ENST00000559898 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP19.28■□□□□ 0.68
HDDC3-205ENST00000559898 CCDC39Q9UFE4 941 aa19.28■□□□□ 0.68
HDDC3-205ENST00000559898 FBXL21Q9UKT6 434 aa19.28■□□□□ 0.68
HDDC3-205ENST00000559898 CDH7Q9ULB5 785 aa19.28■□□□□ 0.68
HDDC3-205ENST00000559898 UBQLN1Q9UMX0 589 aaKnown RBP19.28■□□□□ 0.68
HDDC3-205ENST00000559898 TCHHQ07283 1943 aa19.27■□□□□ 0.68
HDDC3-205ENST00000559898 ARHGEF37A1IGU5 675 aa19.27■□□□□ 0.68
HDDC3-205ENST00000559898 ATF2P15336 505 aa19.27■□□□□ 0.68
HDDC3-205ENST00000559898 AARSP49588 968 aaKnown RBP eCLIP19.27■□□□□ 0.68
HDDC3-205ENST00000559898 ADCY1Q08828 1119 aa19.27■□□□□ 0.68
HDDC3-205ENST00000559898 UVSSAQ2YD98 709 aa19.27■□□□□ 0.68
HDDC3-205ENST00000559898 PABPC1LQ4VXU2 614 aaKnown RBP19.27■□□□□ 0.68
HDDC3-205ENST00000559898 SPATA1Q5VX52 437 aa19.27■□□□□ 0.68
HDDC3-205ENST00000559898 ADALQ6DHV7 355 aa19.27■□□□□ 0.68
HDDC3-205ENST00000559898 SV2BQ7L1I2 683 aa19.27■□□□□ 0.68
HDDC3-205ENST00000559898 EFCAB13Q8IY85 973 aa19.27■□□□□ 0.68
HDDC3-205ENST00000559898 MCRS1Q96EZ8 462 aa19.27■□□□□ 0.68
HDDC3-205ENST00000559898 PGLYRP2Q96PD5 576 aa19.27■□□□□ 0.68
HDDC3-205ENST00000559898 ST6GALNAC4Q9H4F1 302 aa19.27■□□□□ 0.68
HDDC3-205ENST00000559898 CEP72Q9P209 647 aa19.27■□□□□ 0.68
HDDC3-205ENST00000559898 INSL5Q9Y5Q6 135 aa19.27■□□□□ 0.68
HDDC3-205ENST00000559898 STYXL1Q9Y6J8 313 aa19.27■□□□□ 0.68
HDDC3-205ENST00000559898 USP34Q70CQ2 3546 aa19.27■□□□□ 0.68
HDDC3-205ENST00000559898 MYO15AQ9UKN7 3530 aa19.26■□□□□ 0.67
HDDC3-205ENST00000559898 XYLBO75191 536 aa19.26■□□□□ 0.67
HDDC3-205ENST00000559898 SRFP11831 508 aa19.26■□□□□ 0.67
HDDC3-205ENST00000559898 CYP3A5P20815 502 aa19.26■□□□□ 0.67
HDDC3-205ENST00000559898 PTPN5P54829 565 aa19.26■□□□□ 0.67
HDDC3-205ENST00000559898 GPC5P78333 572 aa19.26■□□□□ 0.67
HDDC3-205ENST00000559898 PRSS36Q5K4E3 855 aa19.26■□□□□ 0.67
HDDC3-205ENST00000559898 C9orf57Q5W0N0 161 aa19.26■□□□□ 0.67
HDDC3-205ENST00000559898 TTC9BQ8N6N2 239 aa19.26■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms