RNA–Protein interactions for RNA: ENST00000559711.5

USP3-213, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 1,693 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-213ENST00000559711 GNRH1P01148 92 aa13.59□□□□□ -0.23
USP3-213ENST00000559711 HMGCRP04035 888 aa13.59□□□□□ -0.23
USP3-213ENST00000559711 ABCB4P21439 1286 aa13.59□□□□□ -0.23
USP3-213ENST00000559711 ATICP31939 592 aa13.59□□□□□ -0.23
USP3-213ENST00000559711 GPC5P78333 572 aa13.59□□□□□ -0.23
USP3-213ENST00000559711 TMEM132DQ14C87 1099 aa13.59□□□□□ -0.23
USP3-213ENST00000559711 ELF2Q15723 593 aa13.59□□□□□ -0.23
USP3-213ENST00000559711 ACAD10Q6JQN1 1059 aa13.59□□□□□ -0.23
USP3-213ENST00000559711 TMEM270Q6UE05 265 aa13.59□□□□□ -0.23
USP3-213ENST00000559711 RPAINQ86UA6 219 aa13.59□□□□□ -0.23
USP3-213ENST00000559711 SESTD1Q86VW0 696 aa13.59□□□□□ -0.23
USP3-213ENST00000559711 CREG2Q8IUH2 290 aa13.59□□□□□ -0.23
USP3-213ENST00000559711 RHOT2Q8IXI1 618 aa13.59□□□□□ -0.23
USP3-213ENST00000559711 RBBP8NLQ8NC74 664 aaPredicted RBP13.59□□□□□ -0.23
USP3-213ENST00000559711 CD99L2Q8TCZ2 262 aa13.59□□□□□ -0.23
USP3-213ENST00000559711 GOLGA1Q92805 767 aa13.59□□□□□ -0.23
USP3-213ENST00000559711 ARHGEF26Q96DR7 871 aa13.59□□□□□ -0.23
USP3-213ENST00000559711 OSBPL9Q96SU4 736 aa13.59□□□□□ -0.23
USP3-213ENST00000559711 EIF2AQ9BY44 585 aaKnown RBP13.59□□□□□ -0.23
USP3-213ENST00000559711 CELF4Q9BZC1 486 aaKnown RBP13.59□□□□□ -0.23
USP3-213ENST00000559711 PUF60Q9UHX1 559 aaKnown RBP13.59□□□□□ -0.23
USP3-213ENST00000559711 DERAQ9Y315 318 aa13.59□□□□□ -0.23
USP3-213ENST00000559711 CTAGE15A4D2H0 777 aa13.58□□□□□ -0.24
USP3-213ENST00000559711 NCK2O43639 380 aa13.58□□□□□ -0.24
USP3-213ENST00000559711 FTCDO95954 541 aa13.58□□□□□ -0.24
USP3-213ENST00000559711 CTAGE8P0CG41 777 aa13.58□□□□□ -0.24
USP3-213ENST00000559711 UNGP13051 313 aaPredicted RBP13.58□□□□□ -0.24
USP3-213ENST00000559711 ASPAP45381 313 aa13.58□□□□□ -0.24
USP3-213ENST00000559711 KCNA10Q16322 511 aa13.58□□□□□ -0.24
USP3-213ENST00000559711 GDF6Q6KF10 455 aaPredicted RBP13.58□□□□□ -0.24
USP3-213ENST00000559711 ZNF572Q7Z3I7 529 aaPredicted RBP13.58□□□□□ -0.24
USP3-213ENST00000559711 CTAGE6Q86UF2 777 aa13.58□□□□□ -0.24
USP3-213ENST00000559711 CTAGE4Q8IX94 777 aa13.58□□□□□ -0.24
USP3-213ENST00000559711 SYCE1Q8N0S2 351 aa13.58□□□□□ -0.24
USP3-213ENST00000559711 PXYLP1Q8TE99 480 aa13.58□□□□□ -0.24
USP3-213ENST00000559711 RABGGTAQ92696 567 aa13.58□□□□□ -0.24
USP3-213ENST00000559711 ABCB6Q9NP58 842 aa13.58□□□□□ -0.24
USP3-213ENST00000559711 ZNF185O15231 689 aa13.57□□□□□ -0.24
USP3-213ENST00000559711 MTA2O94776 668 aa13.57□□□□□ -0.24
USP3-213ENST00000559711 STAU1O95793 577 aaKnown RBP13.57□□□□□ -0.24
USP3-213ENST00000559711 CALCAP01258 141 aa13.57□□□□□ -0.24
USP3-213ENST00000559711 CYP1A1P04798 512 aaPredicted RBP13.57□□□□□ -0.24
USP3-213ENST00000559711 CYP1A2P05177 515 aa13.57□□□□□ -0.24
USP3-213ENST00000559711 RPLP2P05387 115 aaKnown RBP13.57□□□□□ -0.24
USP3-213ENST00000559711 ASGR1P07306 291 aa13.57□□□□□ -0.24
USP3-213ENST00000559711 VEGFBP49765 207 aa13.57□□□□□ -0.24
USP3-213ENST00000559711 YWHAEP62258 255 aaKnown RBP13.57□□□□□ -0.24
USP3-213ENST00000559711 MRPS6P82932 125 aaKnown RBP13.57□□□□□ -0.24
USP3-213ENST00000559711 CKAP4Q07065 602 aaKnown RBP13.57□□□□□ -0.24
USP3-213ENST00000559711 ZBTB6Q15916 424 aa13.57□□□□□ -0.24
USP3-213ENST00000559711 ALKAL1Q6UXT8 129 aa13.57□□□□□ -0.24
USP3-213ENST00000559711 TRIM72Q6ZMU5 477 aa13.57□□□□□ -0.24
USP3-213ENST00000559711 SERINC5Q86VE9 423 aa13.57□□□□□ -0.24
USP3-213ENST00000559711 PCSK9Q8NBP7 692 aaKnown RBP13.57□□□□□ -0.24
USP3-213ENST00000559711 COG1Q8WTW3 980 aa13.57□□□□□ -0.24
USP3-213ENST00000559711 RPGRIP1Q96KN7 1286 aa13.57□□□□□ -0.24
USP3-213ENST00000559711 SNX27Q96L92 541 aa13.57□□□□□ -0.24
USP3-213ENST00000559711 MMS19Q96T76 1030 aa13.57□□□□□ -0.24
USP3-213ENST00000559711 BCO2Q9BYV7 579 aa13.57□□□□□ -0.24
USP3-213ENST00000559711 OSGEPQ9NPF4 335 aa13.57□□□□□ -0.24
USP3-213ENST00000559711 CISHQ9NSE2 258 aa13.57□□□□□ -0.24
USP3-213ENST00000559711 SNTG2Q9NY99 539 aa13.57□□□□□ -0.24
USP3-213ENST00000559711 GTF3C4Q9UKN8 822 aa13.57□□□□□ -0.24
USP3-213ENST00000559711 ITGA11Q9UKX5 1188 aa13.57□□□□□ -0.24
USP3-213ENST00000559711 STXBP5LQ9Y2K9 1186 aa13.57□□□□□ -0.24
USP3-213ENST00000559711 ITGB3P05106 788 aa13.56□□□□□ -0.24
USP3-213ENST00000559711 KRT19P08727 400 aa13.56□□□□□ -0.24
USP3-213ENST00000559711 GNA15P30679 374 aa13.56□□□□□ -0.24
USP3-213ENST00000559711 RBP5P82980 135 aa13.56□□□□□ -0.24
USP3-213ENST00000559711 ZNF667Q5HYK9 610 aa13.56□□□□□ -0.24
USP3-213ENST00000559711 UBXN11Q5T124 520 aa13.56□□□□□ -0.24
USP3-213ENST00000559711 RSPH3Q86UC2 560 aa13.56□□□□□ -0.24
USP3-213ENST00000559711 GPR161Q8N6U8 529 aaKnown RBP13.56□□□□□ -0.24
USP3-213ENST00000559711 UBE2Q2Q8WVN8 375 aa13.56□□□□□ -0.24
USP3-213ENST00000559711 DPP3Q9NY33 737 aa13.56□□□□□ -0.24
USP3-213ENST00000559711 RNF14Q9UBS8 474 aa13.56□□□□□ -0.24
USP3-213ENST00000559711 DDX20Q9UHI6 824 aaKnown RBP13.56□□□□□ -0.24
USP3-213ENST00000559711 COG5Q9UP83 839 aa13.56□□□□□ -0.24
USP3-213ENST00000559711 PIN4Q9Y237 131 aaKnown RBP13.56□□□□□ -0.24
USP3-213ENST00000559711 KAT6AQ92794 2004 aa13.56□□□□□ -0.24
USP3-213ENST00000559711 GRIN2DO15399 1336 aa13.56□□□□□ -0.24
USP3-213ENST00000559711 PDE2AO00408 941 aaPredicted RBP13.56□□□□□ -0.24
USP3-213ENST00000559711 CES2O00748 559 aa13.56□□□□□ -0.24
USP3-213ENST00000559711 BUB1BO60566 1050 aaPredicted RBP13.56□□□□□ -0.24
USP3-213ENST00000559711 WEE2P0C1S8 567 aa13.56□□□□□ -0.24
USP3-213ENST00000559711 YARSP54577 528 aaKnown RBP13.56□□□□□ -0.24
USP3-213ENST00000559711 CENPCQ03188 943 aa13.56□□□□□ -0.24
USP3-213ENST00000559711 ITIH3Q06033 890 aa13.56□□□□□ -0.24
USP3-213ENST00000559711 RPS6KA1Q15418 735 aa13.56□□□□□ -0.24
USP3-213ENST00000559711 WDR72Q3MJ13 1102 aa13.56□□□□□ -0.24
USP3-213ENST00000559711 PPP1R2P3Q6NXS1 205 aa13.56□□□□□ -0.24
USP3-213ENST00000559711 DAAM2Q86T65 1068 aa13.56□□□□□ -0.24
USP3-213ENST00000559711 NT5DC3Q86UY8 548 aa13.56□□□□□ -0.24
USP3-213ENST00000559711 RAET1EQ8TD07 263 aa13.56□□□□□ -0.24
USP3-213ENST00000559711 ZNF606Q8WXB4 792 aa13.56□□□□□ -0.24
USP3-213ENST00000559711 KIF12Q96FN5 646 aa13.56□□□□□ -0.24
USP3-213ENST00000559711 CAPZA3Q96KX2 299 aa13.56□□□□□ -0.24
USP3-213ENST00000559711 TSPAN18Q96SJ8 248 aa13.56□□□□□ -0.24
USP3-213ENST00000559711 FAM124BQ9H5Z6 455 aaPredicted RBP13.56□□□□□ -0.24
USP3-213ENST00000559711 CYP3A43Q9HB55 503 aa13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 59.6 ms