RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 TRMT1LQ7Z2T5 733 aaKnown RBP7.76□□□□□ -1.17
VPS13C-206ENST00000558338 NPAS4Q8IUM7 802 aa7.76□□□□□ -1.17
VPS13C-206ENST00000558338 CCDC105Q8IYK2 499 aa7.76□□□□□ -1.17
VPS13C-206ENST00000558338 MCOLN2Q8IZK6 566 aa7.76□□□□□ -1.17
VPS13C-206ENST00000558338 PPM1EQ8WY54 764 aa7.76□□□□□ -1.17
VPS13C-206ENST00000558338 ZKSCAN4Q969J2 545 aaPredicted RBP7.76□□□□□ -1.17
VPS13C-206ENST00000558338 IMPG2Q9BZV3 1241 aa7.76□□□□□ -1.17
VPS13C-206ENST00000558338 CENPHQ9H3R5 247 aa7.76□□□□□ -1.17
VPS13C-206ENST00000558338 LRRC19Q9H756 370 aa7.76□□□□□ -1.17
VPS13C-206ENST00000558338 MRPL47Q9HD33 250 aaKnown RBP7.76□□□□□ -1.17
VPS13C-206ENST00000558338 NRBP2Q9NSY0 501 aa7.76□□□□□ -1.17
VPS13C-206ENST00000558338 RBAKQ9NYW8 714 aaPredicted RBP7.76□□□□□ -1.17
VPS13C-206ENST00000558338 KLHL42Q9P2K6 505 aa7.76□□□□□ -1.17
VPS13C-206ENST00000558338 ANAPC7Q9UJX3 599 aa7.76□□□□□ -1.17
VPS13C-206ENST00000558338 SCAF8Q9UPN6 1271 aaKnown RBP7.76□□□□□ -1.17
VPS13C-206ENST00000558338 BCS1LQ9Y276 419 aa7.76□□□□□ -1.17
VPS13C-206ENST00000558338 CD2APQ9Y5K6 639 aa7.76□□□□□ -1.17
VPS13C-206ENST00000558338 IGKV6D-21A0A0A0MT36 114 aa7.75□□□□□ -1.17
VPS13C-206ENST00000558338 LRRIQ4A6NIV6 560 aa7.75□□□□□ -1.17
VPS13C-206ENST00000558338 K7ERI5 159 aa7.75□□□□□ -1.17
VPS13C-206ENST00000558338 C4BPAP04003 597 aaKnown RBP7.75□□□□□ -1.17
VPS13C-206ENST00000558338 PAEPP09466 180 aa7.75□□□□□ -1.17
VPS13C-206ENST00000558338 PYGMP11217 842 aa7.75□□□□□ -1.17
VPS13C-206ENST00000558338 COPB2P35606 906 aa7.75□□□□□ -1.17
VPS13C-206ENST00000558338 ARL2P36404 184 aa7.75□□□□□ -1.17
VPS13C-206ENST00000558338 CETN2P41208 172 aa7.75□□□□□ -1.17
VPS13C-206ENST00000558338 EFNA5P52803 228 aa7.75□□□□□ -1.17
VPS13C-206ENST00000558338 CAV1Q03135 178 aa7.75□□□□□ -1.17
VPS13C-206ENST00000558338 CUL2Q13617 745 aa7.75□□□□□ -1.17
VPS13C-206ENST00000558338 BYSLQ13895 437 aaKnown RBP7.75□□□□□ -1.17
VPS13C-206ENST00000558338 NEDD9Q14511 834 aa7.75□□□□□ -1.17
VPS13C-206ENST00000558338 SURF1Q15526 300 aa7.75□□□□□ -1.17
VPS13C-206ENST00000558338 FOXR1Q6PIV2 292 aa7.75□□□□□ -1.17
VPS13C-206ENST00000558338 ADAT2Q7Z6V5 191 aaKnown RBP7.75□□□□□ -1.17
VPS13C-206ENST00000558338 ANKRD35Q8N283 1001 aa7.75□□□□□ -1.17
VPS13C-206ENST00000558338 GADD45GIP1Q8TAE8 222 aaPredicted RBP7.75□□□□□ -1.17
VPS13C-206ENST00000558338 TATDN2Q93075 761 aa7.75□□□□□ -1.17
VPS13C-206ENST00000558338 C18orf8Q96DM3 657 aa7.75□□□□□ -1.17
VPS13C-206ENST00000558338 POP1Q99575 1024 aaKnown RBP7.75□□□□□ -1.17
VPS13C-206ENST00000558338 TMEM109Q9BVC6 243 aa7.75□□□□□ -1.17
VPS13C-206ENST00000558338 TRIM31Q9BZY9 425 aa7.75□□□□□ -1.17
VPS13C-206ENST00000558338 WHRNQ9P202 907 aa7.75□□□□□ -1.17
VPS13C-206ENST00000558338 ATP8A1Q9Y2Q0 1164 aa7.75□□□□□ -1.17
VPS13C-206ENST00000558338 NR2E1Q9Y466 385 aa7.75□□□□□ -1.17
VPS13C-206ENST00000558338 AFG3L2Q9Y4W6 797 aa7.75□□□□□ -1.17
VPS13C-206ENST00000558338 A0A087WUV0 522 aaPredicted RBP7.75□□□□□ -1.17
VPS13C-206ENST00000558338 LRRC37A2A6NM11 1700 aa7.75□□□□□ -1.17
VPS13C-206ENST00000558338 NDC80O14777 642 aa7.75□□□□□ -1.17
VPS13C-206ENST00000558338 FSCN2O14926 492 aa7.75□□□□□ -1.17
VPS13C-206ENST00000558338 GRIN3BO60391 1043 aa7.75□□□□□ -1.17
VPS13C-206ENST00000558338 FAM107AO95990 144 aa7.75□□□□□ -1.17
VPS13C-206ENST00000558338 GAS8O95995 478 aa7.75□□□□□ -1.17
VPS13C-206ENST00000558338 CYP1A1P04798 512 aaPredicted RBP7.75□□□□□ -1.17
VPS13C-206ENST00000558338 CLTAP09496 248 aa7.75□□□□□ -1.17
VPS13C-206ENST00000558338 TGFB3P10600 412 aa7.75□□□□□ -1.17
VPS13C-206ENST00000558338 RARGP13631 454 aa7.75□□□□□ -1.17
VPS13C-206ENST00000558338 GLRA2P23416 452 aa7.75□□□□□ -1.17
VPS13C-206ENST00000558338 HPDP32754 393 aaPredicted RBP7.75□□□□□ -1.17
VPS13C-206ENST00000558338 FLT3P36888 993 aa7.75□□□□□ -1.17
VPS13C-206ENST00000558338 MARCKSL1P49006 195 aa7.75□□□□□ -1.17
VPS13C-206ENST00000558338 ALDH5A1P51649 535 aaPredicted RBP7.75□□□□□ -1.17
VPS13C-206ENST00000558338 PLTPP55058 493 aa7.75□□□□□ -1.17
VPS13C-206ENST00000558338 SP4Q02446 784 aa7.75□□□□□ -1.17
VPS13C-206ENST00000558338 PPP1R7Q15435 360 aa7.75□□□□□ -1.17
VPS13C-206ENST00000558338 SGO2Q562F6 1265 aa7.75□□□□□ -1.17
VPS13C-206ENST00000558338 C6orf118Q5T5N4 469 aa7.75□□□□□ -1.17
VPS13C-206ENST00000558338 TDRD10Q5VZ19 366 aaKnown RBP7.75□□□□□ -1.17
VPS13C-206ENST00000558338 KCNV1Q6PIU1 500 aa7.75□□□□□ -1.17
VPS13C-206ENST00000558338 ZDHHC24Q6UX98 284 aa7.75□□□□□ -1.17
VPS13C-206ENST00000558338 ZPBP2Q6X784 338 aa7.75□□□□□ -1.17
VPS13C-206ENST00000558338 TRMT10CQ7L0Y3 403 aaKnown RBP7.75□□□□□ -1.17
VPS13C-206ENST00000558338 DEFB132Q7Z7B7 95 aa7.75□□□□□ -1.17
VPS13C-206ENST00000558338 NLRP14Q86W24 1093 aa7.75□□□□□ -1.17
VPS13C-206ENST00000558338 RIOX2Q8IUF8 465 aa7.75□□□□□ -1.17
VPS13C-206ENST00000558338 BBOF1Q8ND07 529 aa7.75□□□□□ -1.17
VPS13C-206ENST00000558338 TCP11Q8WWU5 503 aa7.75□□□□□ -1.17
VPS13C-206ENST00000558338 CENPTQ96BT3 561 aa7.75□□□□□ -1.17
VPS13C-206ENST00000558338 TLCD1Q96CP7 247 aa7.75□□□□□ -1.17
VPS13C-206ENST00000558338 PGM2Q96G03 612 aa7.75□□□□□ -1.17
VPS13C-206ENST00000558338 JPH2Q9BR39 696 aaPredicted RBP7.75□□□□□ -1.17
VPS13C-206ENST00000558338 BEGAINQ9BUH8 593 aa7.75□□□□□ -1.17
VPS13C-206ENST00000558338 MSTO1Q9BUK6 570 aa7.75□□□□□ -1.17
VPS13C-206ENST00000558338 GGA3Q9NZ52 723 aa7.75□□□□□ -1.17
VPS13C-206ENST00000558338 GRHL1Q9NZI5 618 aa7.75□□□□□ -1.17
VPS13C-206ENST00000558338 RGS17Q9UGC6 210 aaPredicted RBP7.75□□□□□ -1.17
VPS13C-206ENST00000558338 SLC12A6Q9UHW9 1150 aa7.75□□□□□ -1.17
VPS13C-206ENST00000558338 WDR3Q9UNX4 943 aaKnown RBP eCLIP7.75□□□□□ -1.17
VPS13C-206ENST00000558338 CNTN6Q9UQ52 1028 aa7.75□□□□□ -1.17
VPS13C-206ENST00000558338 SNX24Q9Y343 169 aa7.75□□□□□ -1.17
VPS13C-206ENST00000558338 A0A0B4J269 797 aa7.74□□□□□ -1.17
VPS13C-206ENST00000558338 PROSCO94903 275 aa7.74□□□□□ -1.17
VPS13C-206ENST00000558338 AGTP01019 485 aa7.74□□□□□ -1.17
VPS13C-206ENST00000558338 EDNRBP24530 442 aa7.74□□□□□ -1.17
VPS13C-206ENST00000558338 ATP5DP30049 168 aa7.74□□□□□ -1.17
VPS13C-206ENST00000558338 GNA15P30679 374 aa7.74□□□□□ -1.17
VPS13C-206ENST00000558338 RPL21P46778 160 aaKnown RBP7.74□□□□□ -1.17
VPS13C-206ENST00000558338 SOX10P56693 466 aa7.74□□□□□ -1.17
VPS13C-206ENST00000558338 NLRP11P59045 1033 aaKnown RBP7.74□□□□□ -1.17
VPS13C-206ENST00000558338 GUCY1A3Q02108 690 aa7.74□□□□□ -1.17
VPS13C-206ENST00000558338 SIX1Q15475 284 aaPredicted RBP7.74□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms